##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546519_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1172128 Sequences flagged as poor quality 0 Sequence length 50 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.531979442518224 31.0 31.0 33.0 30.0 34.0 2 31.921732950667504 31.0 31.0 34.0 30.0 34.0 3 32.05804741461684 33.0 31.0 34.0 30.0 34.0 4 35.714158351306345 37.0 35.0 37.0 33.0 37.0 5 35.61396536896994 37.0 35.0 37.0 33.0 37.0 6 35.65110209806438 37.0 35.0 37.0 33.0 37.0 7 36.08038029976248 37.0 35.0 37.0 35.0 37.0 8 36.088645608670724 37.0 35.0 37.0 35.0 37.0 9 37.821138135084226 39.0 38.0 39.0 35.0 39.0 10 37.19129224794562 39.0 37.0 39.0 33.0 39.0 11 36.97664418903055 39.0 37.0 39.0 33.0 39.0 12 36.42688511834885 38.0 35.0 39.0 32.0 39.0 13 36.186037702366974 39.0 35.0 39.0 32.0 39.0 14 37.255915736165335 39.0 35.0 41.0 32.0 41.0 15 37.471972344317344 39.0 35.0 41.0 33.0 41.0 16 37.54457533648202 39.0 35.0 41.0 33.0 41.0 17 37.49168179584482 39.0 35.0 41.0 33.0 41.0 18 37.462726767042504 39.0 35.0 41.0 33.0 41.0 19 37.437899273799445 39.0 35.0 41.0 33.0 41.0 20 37.30132459936116 39.0 35.0 41.0 32.0 41.0 21 37.203914589532886 39.0 35.0 41.0 32.0 41.0 22 37.12865830352999 39.0 35.0 41.0 32.0 41.0 23 37.064610690982555 39.0 35.0 41.0 32.0 41.0 24 37.00477166316307 39.0 35.0 41.0 32.0 41.0 25 36.854885302629064 38.0 35.0 41.0 32.0 41.0 26 36.767763418329736 38.0 35.0 41.0 32.0 41.0 27 36.65886746157416 38.0 35.0 41.0 31.0 41.0 28 36.75497897840509 38.0 35.0 41.0 32.0 41.0 29 36.71310983100822 38.0 35.0 41.0 31.0 41.0 30 36.710216802260504 38.0 35.0 40.0 31.0 41.0 31 36.60120140462475 38.0 35.0 40.0 31.0 41.0 32 36.42547656911191 38.0 35.0 41.0 31.0 41.0 33 36.377132019711155 38.0 35.0 41.0 31.0 41.0 34 36.29758268721505 38.0 35.0 41.0 30.0 41.0 35 36.14083956700975 38.0 35.0 41.0 30.0 41.0 36 35.98840826257883 38.0 35.0 41.0 30.0 41.0 37 35.95845846187447 38.0 35.0 41.0 30.0 41.0 38 35.90812692811706 38.0 35.0 40.0 30.0 41.0 39 35.841542050015015 38.0 35.0 40.0 30.0 41.0 40 35.72934355292255 38.0 35.0 40.0 29.0 41.0 41 35.74449718802042 38.0 35.0 40.0 29.0 41.0 42 35.584231414999046 38.0 35.0 40.0 29.0 41.0 43 35.602588625133095 38.0 35.0 40.0 29.0 41.0 44 35.379049045837995 38.0 34.0 40.0 28.0 41.0 45 35.30562617734582 37.0 34.0 40.0 28.0 41.0 46 35.31211778918343 37.0 34.0 40.0 28.0 41.0 47 35.237366567473856 37.0 34.0 40.0 28.0 41.0 48 35.22341587266919 37.0 34.0 40.0 28.0 41.0 49 35.2203820743127 37.0 34.0 40.0 28.0 41.0 50 34.69803041988588 36.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 2.0 12 3.0 13 2.0 14 10.0 15 31.0 16 47.0 17 134.0 18 310.0 19 633.0 20 1193.0 21 1930.0 22 3026.0 23 4393.0 24 6387.0 25 9512.0 26 13262.0 27 16494.0 28 18663.0 29 20985.0 30 25482.0 31 31454.0 32 39876.0 33 52600.0 34 89575.0 35 155521.0 36 84268.0 37 105095.0 38 163719.0 39 327520.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.24252982609408 23.86266687597259 29.350548745529498 13.544254552403833 2 31.032276338420377 25.925410876627808 29.58550601982036 13.456806765131454 3 29.00067228152557 25.292459526604606 31.66428922438505 14.042578967484781 4 25.323002265964128 28.465321193589777 31.03202039367714 15.179656146768952 5 22.850405416473286 32.83131193862786 29.781815637882552 14.536467007016299 6 20.403317726391656 41.07435365420841 27.05088522755194 11.47144339184799 7 87.8058539681673 3.9955533866608426 6.403566845941739 1.7950257992301184 8 87.89970037402058 3.23710379753747 5.918807502252314 2.944388326189631 9 81.80975115345764 5.566627535559256 8.928888312539245 3.6947329984438557 10 41.921530754320344 29.70605599388463 14.909207868082666 13.46320538371236 11 36.38263056594502 23.644516639820907 25.70299489475552 14.269857899478556 12 33.59044404706653 22.22735059652188 27.588710448005678 16.59349490840591 13 22.65964126784788 33.53132081137896 27.97689330858063 15.832144612192526 14 17.80402822899888 36.700599251958835 28.612318791121787 16.8830537279205 15 16.27868287422534 24.239844112588386 43.099047203035845 16.382425810150426 16 18.628596876791615 21.623150372655548 40.7387247809113 19.00952796964154 17 18.372822763384203 21.826285183870702 29.715952523956428 30.084939528788663 18 21.68696592863578 23.21103155969314 34.033057823036394 21.068944688634687 19 26.618679871140355 25.237346091894402 27.629576292009062 20.51439774495618 20 27.44248068470338 24.70071528024243 26.457946572387996 21.398857462666193 21 22.86695650986923 28.17132599852576 28.907423080073162 20.054294411531846 22 22.95406303748396 24.74738253842584 27.2808942368069 25.0176601872833 23 19.751255835540146 29.52552963498867 26.375702994894755 24.34751153457643 24 19.919496846760765 25.605224002839282 35.1654426820279 19.309836468372055 25 19.201486527068717 25.894526877610634 33.0307782085233 21.873208386797348 26 17.822968139998363 31.642277976466733 28.53067241802943 22.00408146550547 27 19.406754211144175 29.470416200278464 29.639339730814385 21.483489857762976 28 17.7928519752109 27.807372573643836 35.48136381009583 18.918411641049442 29 18.520161620573862 24.89113816921019 34.77069057304322 21.818009637172732 30 20.312116082885147 27.982950667503893 31.848142864943078 19.856790384667885 31 26.758852275519395 25.919950722105433 26.1966269895438 21.124570012831363 32 26.600593109284993 26.26786494307789 28.154007070900107 18.97753487673701 33 26.646065958666632 26.168643697616645 26.69588986868328 20.48940047503344 34 20.651328182587566 27.055236288186958 29.86346201097491 22.429973518250566 35 21.810075350132408 25.82985817248628 30.23458188866745 22.12548458871386 36 27.345136367359196 25.567514810669138 27.462870949247865 19.624477872723798 37 22.604015943651206 29.23980998662262 28.58587116765404 19.57030290207213 38 21.759483605886047 31.03568893499686 25.550537142701142 21.654290316415956 39 21.2865830352999 29.109448797400965 27.00438859919736 22.599579568101777 40 23.157368478527943 25.854002293264898 27.621983264626387 23.36664596358077 41 19.311798711403533 24.59791080837588 28.3086830107292 27.781607469491387 42 22.609732042916814 25.977879548991233 26.911480657402603 24.500907750689343 43 22.331861366676677 26.253787982199896 27.80029143574763 23.614059215375796 44 20.875877037320155 28.839938982773212 29.221467280024026 21.062716699882607 45 19.282876955417837 31.255972044008846 26.967959130743402 22.493191869829914 46 22.826517240437905 28.69191760626826 28.232411477244806 20.24915367604903 47 21.72305413743209 25.961072510852055 28.928154604275303 23.38771874744055 48 22.6357530918125 24.694999180976822 29.78667858800404 22.88256913920664 49 22.093576810723743 22.91464754702558 31.021697289033277 23.970078353217396 50 20.877839280351633 28.593037620464663 28.705738622403015 21.823384476780696 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1174.0 1 1312.5 2 1451.0 3 5723.5 4 9996.0 5 6949.5 6 3903.0 7 4203.5 8 4504.0 9 4850.5 10 5197.0 11 5218.5 12 5240.0 13 5015.0 14 4790.0 15 4564.5 16 4339.0 17 4195.5 18 4052.0 19 4021.5 20 3991.0 21 4766.0 22 5541.0 23 6216.0 24 6891.0 25 7471.5 26 8052.0 27 9913.5 28 11775.0 29 14071.5 30 16368.0 31 18404.0 32 20440.0 33 23747.5 34 27055.0 35 30502.0 36 33949.0 37 38034.5 38 42120.0 39 49153.5 40 56187.0 41 70474.0 42 84761.0 43 94738.0 44 104715.0 45 109905.0 46 115095.0 47 113959.0 48 112823.0 49 109438.5 50 106054.0 51 95343.0 52 84632.0 53 75975.5 54 67319.0 55 58907.0 56 50495.0 57 46717.0 58 42939.0 59 39712.0 60 36485.0 61 32610.5 62 28736.0 63 25375.5 64 22015.0 65 17816.0 66 13617.0 67 11306.5 68 8996.0 69 7886.0 70 6776.0 71 5634.5 72 4493.0 73 3378.5 74 2264.0 75 1816.0 76 1368.0 77 1064.5 78 761.0 79 598.0 80 435.0 81 343.0 82 251.0 83 146.5 84 42.0 85 31.0 86 20.0 87 13.5 88 7.0 89 8.0 90 9.0 91 5.5 92 2.0 93 1.5 94 1.0 95 1.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1172128.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.311402477390192 #Duplication Level Percentage of deduplicated Percentage of total 1 78.24027540796187 18.23890549976853 2 6.623768304593162 3.0881865773070336 3 2.325986739693008 1.6266603913816895 4 1.3375619565195986 1.2472178042749538 5 0.9588791541895039 1.1176408945245504 6 0.7220588936225347 1.0099323288968387 7 0.5912313920277026 0.9647703055777807 8 0.4676989397879692 0.8722174578916825 9 0.42466757373940744 0.8909637057482496 >10 6.298597730470081 37.09622862909496 >50 1.9052635728139093 29.25453638084618 >100 0.10107011310900436 3.4288334986385935 >500 0.0018376384201637004 0.3261679900381562 >1k 7.350553680654802E-4 0.3193139214269 >5k 3.675276840327401E-4 0.5184246145838938 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6051 0.5162405471074831 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 2685 0.22907054519642908 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.08736247235796774 0.0 2 0.0 0.0 0.0 0.3236847852794234 0.0 3 0.0 0.0 0.0 0.4873187911217887 0.0 4 0.0 0.0 0.0 0.7076019001337738 0.0 5 0.0 0.0 0.0 1.0862294902945753 0.0 6 0.0 0.0 0.0 1.7228493816375003 0.0 7 0.0 0.0 0.0 2.0671803762046466 0.0 8 0.0 0.0 0.0 3.2318142728439216 0.0 9 0.0 0.0 0.0 3.7984759343689425 0.0 10 0.0 0.0 0.0 4.601374593901007 0.0 11 0.0 0.0 0.0 5.10362349504491 0.0 12 0.0 0.0 0.0 5.534037238253843 0.0 13 0.0 0.0 0.0 5.74868956291463 0.0 14 0.0 0.0 0.0 5.8473136039749924 0.0 15 0.0 0.0 0.0 5.957284528652161 0.0 16 0.0 0.0 0.0 6.179188621037976 0.0 17 0.0 0.0 0.0 6.41917947527915 0.0 18 0.0 0.0 0.0 6.776904911408993 0.0 19 0.0 0.0 0.0 6.927741680089547 0.0 20 0.0 0.0 0.0 7.122856889349968 0.0 21 0.0 0.0 0.0 7.319081192497747 0.0 22 0.0 0.0 0.0 7.522898523028202 0.0 23 0.0 0.0 0.0 7.745741079472549 0.0 24 0.0 0.0 0.0 7.917138742526413 0.0 25 0.0 0.0 0.0 8.057652406563106 0.0 26 0.0 0.0 0.0 8.208574490158071 0.0 27 0.0 0.0 0.0 8.390124628026973 0.0 28 0.0 0.0 0.0 8.54684812580196 0.0 29 0.0 0.0 0.0 8.708093314040788 0.0 30 0.0 0.0 0.0 8.918735837724208 0.0 31 0.0 0.0 0.0 9.102162903710175 0.0 32 0.0 0.0 0.0 9.268100412241667 0.0 33 0.0 0.0 0.0 9.432502252313741 0.0 34 0.0 0.0 0.0 9.610810423434984 0.0 35 0.0 0.0 0.0 9.819831963744575 0.0 36 0.0 0.0 0.0 9.996092576919926 0.0 37 0.0 0.0 0.0 10.173718228725873 0.0 38 0.0 0.0 0.0 10.358936907914494 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCGAAA 20 7.8565435E-4 44.000004 20 TCTAGCG 40 8.312782E-9 44.000004 1 CTCGACT 20 7.8565435E-4 44.000004 39 ACCGTTG 20 7.8565435E-4 44.000004 22 GTCCCGA 20 7.8565435E-4 44.000004 39 TACCGTT 20 7.8565435E-4 44.000004 13 GTACGAC 20 7.8565435E-4 44.000004 44 CGTTTTT 3880 0.0 41.84536 1 CGTTAGG 245 0.0 40.40816 2 CGACGGT 120 0.0 40.333332 28 CACGACG 120 0.0 40.333332 26 TAATGCG 55 7.8216544E-11 40.0 1 TTTCGCG 50 1.3478711E-9 39.600002 1 ACGTAGG 140 0.0 39.285713 2 ACGTTAG 90 0.0 39.11111 1 TCTAACG 45 2.3510438E-8 39.11111 1 AACGGGA 300 0.0 38.866665 4 GGCGATA 555 0.0 38.846848 8 TCGTTAG 85 0.0 38.82353 1 CGGTCTA 125 0.0 38.72 31 >>END_MODULE