##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546517_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1258304 Sequences flagged as poor quality 0 Sequence length 50 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.507120695793702 31.0 31.0 33.0 30.0 34.0 2 31.90108670082905 31.0 31.0 34.0 30.0 34.0 3 32.03847798306292 33.0 31.0 34.0 30.0 34.0 4 35.70805703550175 37.0 35.0 37.0 33.0 37.0 5 35.605481664208334 37.0 35.0 37.0 33.0 37.0 6 35.64434429199939 37.0 35.0 37.0 33.0 37.0 7 36.05173551065561 37.0 35.0 37.0 35.0 37.0 8 36.04212733965719 37.0 35.0 37.0 35.0 37.0 9 37.74614401607243 39.0 38.0 39.0 35.0 39.0 10 37.178301904786125 39.0 37.0 39.0 33.0 39.0 11 36.92940100325517 39.0 37.0 39.0 33.0 39.0 12 36.48262343599003 39.0 35.0 39.0 32.0 39.0 13 36.33573047530644 39.0 35.0 39.0 32.0 39.0 14 37.39982627409593 40.0 35.0 41.0 32.0 41.0 15 37.56264066553074 40.0 35.0 41.0 33.0 41.0 16 37.62923744977366 40.0 35.0 41.0 33.0 41.0 17 37.578094005900006 39.0 35.0 41.0 33.0 41.0 18 37.518998588576366 39.0 36.0 41.0 33.0 41.0 19 37.522163960378414 39.0 36.0 41.0 33.0 41.0 20 37.38563733406236 39.0 35.0 41.0 32.0 41.0 21 37.27191044453487 39.0 35.0 41.0 32.0 41.0 22 37.20536134352271 39.0 35.0 41.0 32.0 41.0 23 37.12461456055134 39.0 35.0 41.0 32.0 41.0 24 37.09310389222318 39.0 35.0 41.0 32.0 41.0 25 36.92646768984284 39.0 35.0 41.0 32.0 41.0 26 36.83877266542902 38.0 35.0 41.0 32.0 41.0 27 36.72054924724073 38.0 35.0 41.0 31.0 41.0 28 36.78887693276029 38.0 35.0 41.0 31.0 41.0 29 36.72590725293729 38.0 35.0 41.0 31.0 41.0 30 36.715652179441534 38.0 35.0 41.0 31.0 41.0 31 36.61191333731753 38.0 35.0 41.0 31.0 41.0 32 36.42337384288693 38.0 35.0 41.0 30.0 41.0 33 36.36108841742536 38.0 35.0 41.0 30.0 41.0 34 36.29408870988251 38.0 35.0 41.0 30.0 41.0 35 36.12361957046946 38.0 35.0 41.0 30.0 41.0 36 35.99294923961141 38.0 35.0 41.0 30.0 41.0 37 35.953539844107624 38.0 35.0 41.0 30.0 41.0 38 35.91696283251106 38.0 35.0 41.0 30.0 41.0 39 35.846576026143126 38.0 35.0 40.0 29.0 41.0 40 35.7492672676873 38.0 35.0 40.0 29.0 41.0 41 35.768166516199585 38.0 35.0 40.0 29.0 41.0 42 35.59590607675093 38.0 35.0 40.0 28.0 41.0 43 35.62476953105132 38.0 35.0 40.0 29.0 41.0 44 35.39479966685316 38.0 34.0 40.0 28.0 41.0 45 35.29637194191547 38.0 34.0 40.0 27.0 41.0 46 35.29725646584609 38.0 34.0 40.0 28.0 41.0 47 35.202886583846194 37.0 34.0 40.0 27.0 41.0 48 35.173704446620214 37.0 34.0 40.0 27.0 41.0 49 35.168820889069735 37.0 34.0 40.0 27.0 41.0 50 34.6236473856874 36.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 3.0 13 6.0 14 9.0 15 24.0 16 47.0 17 156.0 18 344.0 19 714.0 20 1288.0 21 2190.0 22 3357.0 23 4995.0 24 7396.0 25 10490.0 26 14795.0 27 18395.0 28 20727.0 29 23193.0 30 27492.0 31 33601.0 32 42248.0 33 55820.0 34 93422.0 35 148742.0 36 91695.0 37 118209.0 38 182619.0 39 356326.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.190701134225115 23.85226463557296 27.53190008137938 13.425134148822544 2 32.786433167183766 25.47834227658817 28.273135903565432 13.462088652662633 3 30.38645669091094 24.958833477442653 30.439941381414986 14.214768450231421 4 25.856708712679925 28.220684349727886 30.137232338131327 15.78537459946086 5 23.376068104369054 32.49818803723107 29.058796602410865 15.066947255989014 6 20.949786379126188 41.383878617567774 26.731378108946647 10.934956894359392 7 86.43992230812268 4.51258201515691 6.881882279639896 2.1656133970805147 8 86.68763669192818 3.7999561314276993 6.736766314022684 2.7756408626214335 9 80.57869958293068 6.318743324347693 9.180452418493463 3.9221046742281676 10 41.9556800264483 30.530460047810386 15.081172753166166 12.432687172575148 11 33.96373213468287 24.84653946899954 26.026143125985453 15.163585270332131 12 31.34091602665175 23.861086033263824 27.828092416458976 16.96990552362545 13 22.9084545547022 32.32684629469508 28.70037765118763 16.064321499415087 14 18.312347413661563 35.56708076903515 29.273768501093535 16.846803316209755 15 17.42480354508926 25.451321779156704 40.55156782462743 16.572306851126594 16 19.529541350897716 23.117783937744775 38.67086173134632 18.681812980011188 17 20.24987602360002 22.464603148364784 29.638147856161943 27.647372971873253 18 22.780266136005288 23.85965553634098 32.805109099231984 20.554969228421747 19 26.704357611515185 25.371690783785155 27.98743387925334 19.936517725446315 20 28.001579904379227 24.490663623416918 26.766266339453743 20.741490132750116 21 24.381707441127105 27.25080743604089 28.85455343064951 19.51293169218249 22 23.37495549565129 25.38067112557856 27.792568409541733 23.45180496922842 23 20.51793525253039 29.35141269518336 27.31621293423529 22.814439118050963 24 20.436476399979657 25.242548700473016 33.89260464879711 20.428370250750216 25 19.83105831341234 26.77016046996592 32.105437159859626 21.293344056762116 26 19.543290015767255 30.513453028838818 28.536426809419662 21.406830145974265 27 20.262114719495447 29.64379037180204 28.981629240628653 21.112465668073852 28 18.865155002288795 28.29340127663903 33.40003687503179 19.441406846040383 29 19.68792914907685 25.659300137327705 33.181965566349625 21.470805147245816 30 21.39928030110371 27.371366537815984 30.5783816947256 20.65097146635471 31 25.433122679416105 26.93498550429785 26.79527363816693 20.836618178119117 32 26.450285463608157 27.614471542647884 27.08502873709374 18.850214256650222 33 25.25931730329078 26.8779245714867 26.944045318142518 20.918712807080006 34 21.71764533848736 27.631955393927065 28.909309673973855 21.74108959361172 35 21.702625120797517 26.60350757845481 30.27487793092925 21.418989369818423 36 26.42843064950918 27.04314696607497 26.813949570215144 19.7144728142007 37 23.25701897156808 28.989258557550478 27.987592823355882 19.766129647525556 38 21.667736890290424 31.142712730786837 26.208769899801638 20.9807804791211 39 21.471838283912316 29.222667972127564 27.062538146584608 22.242955597375516 40 23.072008036213823 26.898666776867913 27.185481409897765 22.8438437770205 41 19.534707034230202 25.837238060119017 28.01119602258278 26.616858883068 42 22.794809521387517 27.320345480901274 26.065322847261076 23.81952215045013 43 22.41421786786023 26.659376430496923 28.02875934591323 22.897646355729616 44 21.832800340776156 29.01564327857179 27.947062077208688 21.204494303443365 45 20.353825466659885 30.30436206195005 26.921475255582116 22.420337215807944 46 22.27617491480596 29.533244748486855 27.52498601291898 20.665594323788213 47 22.524763491175424 27.002457275825236 28.269162301001984 22.203616931997356 48 22.68712489191801 25.76992523269417 29.41840763440313 22.12454224098469 49 22.31972559890138 24.874275214892428 29.892776308427855 22.913222877778345 50 20.0004132546666 30.060064976349114 28.123013198718276 21.81650857026601 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1037.0 1 1289.5 2 1542.0 3 6353.0 4 11164.0 5 7857.0 6 4550.0 7 4768.0 8 4986.0 9 5181.0 10 5376.0 11 5325.0 12 5274.0 13 5153.5 14 5033.0 15 4800.5 16 4568.0 17 4732.5 18 4897.0 19 4918.0 20 4939.0 21 5640.0 22 6341.0 23 6563.5 24 6786.0 25 8205.5 26 9625.0 27 11481.0 28 13337.0 29 16123.5 30 18910.0 31 20512.0 32 22114.0 33 26097.0 34 30080.0 35 35529.0 36 40978.0 37 44029.0 38 47080.0 39 54592.0 40 62104.0 41 75033.5 42 87963.0 43 97103.5 44 106244.0 45 112101.5 46 117959.0 47 115667.5 48 113376.0 49 110908.0 50 108440.0 51 101070.0 52 93700.0 53 83660.5 54 73621.0 55 65115.0 56 56609.0 57 52009.5 58 47410.0 59 43167.5 60 38925.0 61 36255.0 62 33585.0 63 28887.5 64 24190.0 65 20479.5 66 16769.0 67 13474.0 68 10179.0 69 8614.5 70 7050.0 71 6149.5 72 5249.0 73 4014.5 74 2780.0 75 2132.0 76 1484.0 77 1261.0 78 1038.0 79 797.0 80 556.0 81 418.5 82 281.0 83 186.5 84 92.0 85 78.5 86 65.0 87 37.0 88 9.0 89 7.0 90 5.0 91 3.0 92 1.0 93 2.0 94 3.0 95 1.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1258304.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.655734805226857 #Duplication Level Percentage of deduplicated Percentage of total 1 78.04268166246796 19.241996625585507 2 6.436825101696214 3.1740930539009846 3 2.326787384282297 1.7210595808503533 4 1.3499926197231935 1.331402400836341 5 0.9512574565374341 1.1726975789940792 6 0.7248522821702886 1.0723059385292462 7 0.6081295355767309 1.0495716389483953 8 0.4928342362798134 0.9720952186121272 9 0.4497331425697384 0.9979650986688675 >10 7.1659950401362025 44.94942792415323 >50 1.4030757869848784 21.788393618205156 >100 0.045896464349302175 1.619239788445187 >500 0.0012928581506801114 0.22002662807647932 >1k 3.2321453767002786E-4 0.16814783963830907 >5k 3.2321453767002786E-4 0.5215770665557976 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6545 0.5201445755556686 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 2110 0.1676860281776105 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0720016784497228 0.0 2 0.0 0.0 0.0 0.2143361222725192 0.0 3 0.0 0.0 0.0 0.3249612176389807 0.0 4 0.0 0.0 0.0 0.4624478663343675 0.0 5 0.0 0.0 0.0 0.7353548903921469 0.0 6 0.0 0.0 0.0 1.2460422918468033 0.0 7 0.0 0.0 0.0 1.538022608209145 0.0 8 0.0 0.0 0.0 2.3651677178169983 0.0 9 0.0 0.0 0.0 2.814184807486903 0.0 10 0.0 0.0 0.0 3.5027306596816032 0.0 11 0.0 0.0 0.0 3.9621585880677483 0.0 12 0.0 0.0 0.0 4.409506764661004 0.0 13 0.0 0.0 0.0 4.625829688215249 0.0 14 0.0 0.0 0.0 4.72922282691623 0.0 15 0.0 0.0 0.0 4.829754971771528 0.0 16 0.0 0.0 0.0 5.038766466609023 0.0 17 0.0 0.0 0.0 5.267804918366309 0.0 18 0.0 0.0 0.0 5.647681323432176 0.0 19 0.0 0.0 0.0 5.789300518793551 0.0 20 0.0 0.0 0.0 5.946416764152383 0.0 21 0.0 0.0 0.0 6.121255276944204 0.0 22 0.0 0.0 0.0 6.309524566400488 0.0 23 0.0 0.0 0.0 6.513131961751691 0.0 24 0.0 0.0 0.0 6.6797053812115355 0.0 25 0.0 0.0 0.0 6.813774731702355 7.947205126900971E-5 26 0.0 0.0 0.0 6.9558707593713445 7.947205126900971E-5 27 0.0 0.0 0.0 7.122126290626112 7.947205126900971E-5 28 0.0 0.0 0.0 7.272487411627079 7.947205126900971E-5 29 0.0 0.0 0.0 7.428967880575759 7.947205126900971E-5 30 0.0 0.0 0.0 7.650933319770103 7.947205126900971E-5 31 0.0 0.0 0.0 7.818301459742638 7.947205126900971E-5 32 0.0 0.0 0.0 7.990596866893851 7.947205126900971E-5 33 0.0 0.0 0.0 8.153832460200396 7.947205126900971E-5 34 0.0 0.0 0.0 8.323425817608463 7.947205126900971E-5 35 0.0 0.0 0.0 8.509708305783022 7.947205126900971E-5 36 0.0 0.0 0.0 8.675010172422562 7.947205126900971E-5 37 0.0 0.0 0.0 8.851597070342303 7.947205126900971E-5 38 0.0 0.0 0.0 9.014832663648848 7.947205126900971E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCATCG 45 4.802132E-10 44.0 21 TAATTCG 30 2.5279096E-6 44.0 41 ACGAACC 20 7.8567665E-4 44.0 17 CGTTTTT 4260 0.0 41.3662 1 CACAACG 140 0.0 40.85714 12 CTAAGCG 40 4.1249587E-7 38.5 1 GGACCGA 690 0.0 38.260868 8 ACAACGA 150 0.0 38.13333 13 GACCGAT 655 0.0 37.954197 9 GCGATCT 175 0.0 37.714287 9 CTAGGGA 700 0.0 37.714287 4 ACGCACC 35 7.2907605E-6 37.714283 10 GCGATAC 70 0.0 37.714283 9 GACGGGT 135 0.0 37.48148 4 ACGGGTC 95 0.0 37.05263 5 TGTTACG 95 0.0 37.05263 1 GGCGATC 425 0.0 36.75294 8 TGGGCGA 785 0.0 36.713375 6 GGGCGAT 2745 0.0 36.706738 7 CGTAAGG 210 0.0 36.666668 2 >>END_MODULE