##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546516_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2171712 Sequences flagged as poor quality 0 Sequence length 50 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.409482933280287 31.0 31.0 33.0 30.0 34.0 2 31.797977356113517 31.0 31.0 34.0 30.0 34.0 3 31.9340262428904 33.0 31.0 34.0 30.0 34.0 4 35.61231599770135 37.0 35.0 37.0 33.0 37.0 5 35.49992448354109 37.0 35.0 37.0 33.0 37.0 6 35.54739256402322 37.0 35.0 37.0 33.0 37.0 7 36.01663526287095 37.0 35.0 37.0 35.0 37.0 8 36.00799875858309 37.0 35.0 37.0 35.0 37.0 9 37.700591514897006 39.0 37.0 39.0 35.0 39.0 10 37.06002131037633 39.0 37.0 39.0 33.0 39.0 11 36.83820092166917 39.0 37.0 39.0 32.0 39.0 12 36.45191627619132 39.0 35.0 39.0 32.0 39.0 13 36.30926706671971 39.0 35.0 39.0 32.0 39.0 14 37.365018473904456 40.0 35.0 41.0 32.0 41.0 15 37.52252324433442 39.0 35.0 41.0 32.0 41.0 16 37.576543759025135 39.0 35.0 41.0 33.0 41.0 17 37.52524091592255 39.0 35.0 41.0 32.0 41.0 18 37.47407114755548 39.0 36.0 41.0 32.0 41.0 19 37.47596780788613 39.0 36.0 41.0 32.0 41.0 20 37.34323197551056 39.0 35.0 41.0 32.0 41.0 21 37.21948996920402 39.0 35.0 41.0 32.0 41.0 22 37.16658424321457 39.0 35.0 41.0 32.0 41.0 23 37.052576032181065 39.0 35.0 41.0 32.0 41.0 24 37.03605588586332 39.0 35.0 41.0 32.0 41.0 25 36.8593137579937 39.0 35.0 41.0 31.0 41.0 26 36.76787483791589 38.0 35.0 41.0 31.0 41.0 27 36.65773362213774 38.0 35.0 41.0 31.0 41.0 28 36.73182447764713 38.0 35.0 41.0 31.0 41.0 29 36.697540926237 38.0 35.0 41.0 31.0 41.0 30 36.677103133380484 38.0 35.0 41.0 31.0 41.0 31 36.55745467170601 38.0 35.0 41.0 31.0 41.0 32 36.37207419768367 38.0 35.0 41.0 30.0 41.0 33 36.31638863716736 39.0 35.0 41.0 30.0 41.0 34 36.23990381781746 39.0 35.0 41.0 30.0 41.0 35 36.08159323151504 38.0 35.0 41.0 30.0 41.0 36 35.97224355715675 38.0 35.0 41.0 29.0 41.0 37 35.92577054416055 38.0 35.0 41.0 29.0 41.0 38 35.913213170070435 38.0 35.0 41.0 29.0 41.0 39 35.78141807016768 38.0 35.0 40.0 29.0 41.0 40 35.70735069843515 38.0 35.0 40.0 28.0 41.0 41 35.690039471163765 38.0 35.0 40.0 28.0 41.0 42 35.53143188415407 38.0 35.0 40.0 27.0 41.0 43 35.567788454454366 38.0 35.0 40.0 28.0 41.0 44 35.343845316506055 38.0 34.0 40.0 27.0 41.0 45 35.259931335278345 38.0 34.0 40.0 27.0 41.0 46 35.26924150163558 38.0 34.0 40.0 27.0 41.0 47 35.18474963531076 38.0 34.0 40.0 27.0 41.0 48 35.146785116995254 37.0 34.0 40.0 27.0 41.0 49 35.1354608714231 37.0 34.0 40.0 27.0 41.0 50 34.594727109303626 37.0 34.0 40.0 25.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 3.0 12 8.0 13 5.0 14 16.0 15 40.0 16 119.0 17 326.0 18 708.0 19 1448.0 20 2634.0 21 4174.0 22 6304.0 23 9347.0 24 13448.0 25 19581.0 26 27050.0 27 33003.0 28 37394.0 29 42360.0 30 50036.0 31 61204.0 32 75938.0 33 96949.0 34 154497.0 35 236409.0 36 160475.0 37 204553.0 38 316379.0 39 617303.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.976092594229804 23.65437958624348 27.73493907111072 13.634588748415997 2 32.21039438010197 25.70644726372558 28.817449090855508 13.265709265316946 3 29.581869050776533 25.871294167919135 30.871680959537912 13.675155821766422 4 25.37182646686117 28.50543718504111 30.752005790823095 15.370730557274628 5 22.952951404237762 32.880234579907466 29.0782111071818 15.088602908672973 6 20.662408275130403 41.9682259894498 26.560197668935842 10.809168066483954 7 87.27547667462352 3.903049759820824 6.797862700026523 2.023610865529131 8 87.2687078212949 3.2233095364394546 6.526049494592284 2.9819331476733564 9 80.75011787935048 6.035791117790941 9.529348274541007 3.684742728317567 10 38.14027826894174 33.69461512392067 15.001344561341467 13.163762045796126 11 31.924352768691243 25.062439218459907 27.846694220964842 15.166513791884007 12 30.051314354757906 23.427369743317712 28.78701227418737 17.73430362773701 13 22.958292812306606 29.784750464149944 30.48429073468305 16.772665988860403 14 18.87262215247694 33.16199385553886 30.050347375710963 17.915036616273245 15 17.328632894232754 25.39788885450741 40.33007139068164 16.943406860578197 16 19.783378274835705 24.10319600389002 37.622484012613086 18.490941708661186 17 19.843515162231455 23.089663822827337 30.671608390062772 26.39521262487844 18 22.313824300828102 23.936507234845138 33.46677644181181 20.282892022514957 19 25.521431939410018 26.47270908849792 28.260469159814928 19.745389812277132 20 26.673656543777447 25.79913911236849 27.13453717620016 20.392667167653904 21 23.653965166651933 28.201115064980993 28.97414574308196 19.17077402528512 22 22.773001208263345 25.439607093389917 28.23403839919842 23.553353299148323 23 19.462341231249816 30.182731411899923 27.829564877847524 22.52536247900274 24 19.535463265847405 26.324577107830137 33.754245498482305 20.385714127840153 25 19.86617009990275 27.65900819261486 31.365530972799338 21.109290734683054 26 19.10354595821177 29.960280184481185 29.1630289835853 21.773144873721744 27 19.96839359915127 28.61622535584829 29.638966861167592 21.77641418383285 28 18.734850661597854 27.844299796658124 33.963112972622525 19.457736569121504 29 19.77697779447735 25.68917978074441 32.65018565997701 21.883656764801227 30 21.43530081336752 27.004593610939203 30.62975201131642 20.930353564376862 31 24.74545427754693 26.269136975805264 27.269453776559693 21.715954970088113 32 26.042081086258218 26.73756925411841 27.709935755753985 19.510413903869388 33 23.791276191318186 26.160512996198392 27.714172044912033 22.33403876757139 34 20.419650487725814 26.352619500191555 30.823424100433204 22.404305911649427 35 20.18909505496125 26.3181305808505 30.99365845931689 22.499115904871363 36 24.601282306309493 25.68245697403707 28.458884050923878 21.257376668729556 37 21.102521881354434 28.759936860872898 29.607286785724813 20.530254472047858 38 21.606456104676862 29.116752129195767 27.541405121857775 21.735386644269592 39 20.763204329119148 28.551714039430642 29.237348230336252 21.44773340111396 40 23.18557893496007 26.166867429935458 28.67148130138803 21.97607233371644 41 19.426148586921286 25.274529956089943 29.901524695723925 25.397796761264846 42 22.993058011375357 26.66518396546135 27.13900369846462 23.20275432469867 43 21.69887167359208 26.214111263371937 28.97626388766098 23.110753175375002 44 21.267138552441576 28.107916703503967 29.406017004096306 21.21892773995815 45 19.601954586980224 29.42434355936699 28.422553266731498 22.551148586921286 46 22.10647636519023 28.56364011434297 28.16409358146937 21.165789938997438 47 21.427426841128106 26.980050761795304 29.166942946394364 22.425579450682225 48 22.560634190905606 25.123128665311057 29.383454159667583 22.932782984115757 49 21.792023988447824 24.586086921286064 30.502525196711165 23.119363893554947 50 19.968347552529984 28.10860740282321 29.73290196858515 22.19014307606165 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1320.0 1 1726.5 2 2133.0 3 10389.5 4 18646.0 5 13350.0 6 8054.0 7 8409.5 8 8765.0 9 9069.0 10 9373.0 11 9348.0 12 9323.0 13 9063.5 14 8804.0 15 8534.5 16 8265.0 17 8060.0 18 7855.0 19 8194.0 20 8533.0 21 9651.0 22 10769.0 23 11692.0 24 12615.0 25 15027.5 26 17440.0 27 22030.5 28 26621.0 29 30407.5 30 34194.0 31 39001.0 32 43808.0 33 53288.5 34 62769.0 35 69443.0 36 76117.0 37 81671.5 38 87226.0 39 97765.5 40 108305.0 41 127364.5 42 146424.0 43 161614.5 44 176805.0 45 186645.5 46 196486.0 47 199878.5 48 203271.0 49 201002.5 50 198734.0 51 180284.0 52 161834.0 53 142866.0 54 123898.0 55 109238.0 56 94578.0 57 87336.5 58 80095.0 59 73030.5 60 65966.0 61 58412.5 62 50859.0 63 44035.5 64 37212.0 65 30070.5 66 22929.0 67 19215.0 68 15501.0 69 13097.0 70 10693.0 71 8346.5 72 6000.0 73 5028.0 74 4056.0 75 3535.5 76 3015.0 77 2169.5 78 1324.0 79 956.0 80 588.0 81 486.0 82 384.0 83 228.5 84 73.0 85 51.0 86 29.0 87 21.5 88 14.0 89 8.0 90 2.0 91 3.0 92 4.0 93 2.5 94 1.0 95 1.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2171712.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.833204765982178 #Duplication Level Percentage of deduplicated Percentage of total 1 78.47720497963935 17.91886090762062 2 7.173990922434986 3.2761040744251084 3 2.4593208731933776 1.6846253124863542 4 1.35571211125915 1.238210089604087 5 0.8836788252360714 1.0088609781988898 6 0.7095901855825556 0.9721330804402671 7 0.5362309565843824 0.857070986348479 8 0.43034123470099706 0.786085562493877 9 0.3680136274397942 0.7562637460804229 >10 5.254137299959946 29.304416339953576 >50 2.0687227429833017 33.130077555775216 >100 0.28021757324942065 8.025839038903808 >500 0.0018248578307555182 0.2637080443834144 >1k 8.110479247802303E-4 0.28014350009902395 >5k 0.0 0.0 >10k+ 2.0276198119505758E-4 0.49760078318696244 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10748 0.4949090855509386 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 2887 0.132936595644358 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.604662128311673E-5 0.0 0.0 0.05171035570094009 0.0 2 4.604662128311673E-5 0.0 0.0 0.1786148439572098 0.0 3 4.604662128311673E-5 0.0 0.0 0.29704675389738605 0.0 4 4.604662128311673E-5 0.0 0.0 0.4742801992161023 0.0 5 4.604662128311673E-5 0.0 0.0 0.7930609583591195 0.0 6 4.604662128311673E-5 0.0 0.0 1.489562151887543 0.0 7 4.604662128311673E-5 0.0 0.0 1.9111189697344768 0.0 8 4.604662128311673E-5 0.0 0.0 3.2669156867945657 0.0 9 4.604662128311673E-5 0.0 0.0 4.032763091975363 0.0 10 4.604662128311673E-5 0.0 0.0 5.121903825184924 0.0 11 4.604662128311673E-5 0.0 0.0 5.669075825892199 0.0 12 4.604662128311673E-5 0.0 0.0 6.177108198508826 0.0 13 4.604662128311673E-5 0.0 0.0 6.459143753867917 0.0 14 4.604662128311673E-5 0.0 0.0 6.599309669053723 0.0 15 4.604662128311673E-5 0.0 0.0 6.712768543895323 0.0 16 4.604662128311673E-5 0.0 0.0 6.924767188282792 0.0 17 4.604662128311673E-5 0.0 0.0 7.1554607609112075 0.0 18 4.604662128311673E-5 0.0 0.0 7.538430510122889 0.0 19 4.604662128311673E-5 0.0 0.0 7.693929950195974 0.0 20 4.604662128311673E-5 0.0 0.0 7.889305764300238 0.0 21 4.604662128311673E-5 0.0 0.0 8.083714599357558 0.0 22 4.604662128311673E-5 0.0 0.0 8.2802415789939 0.0 23 4.604662128311673E-5 0.0 0.0 8.50393606518728 0.0 24 4.604662128311673E-5 0.0 0.0 8.67928159903339 0.0 25 4.604662128311673E-5 0.0 0.0 8.828472651990687 0.0 26 4.604662128311673E-5 0.0 0.0 8.975913933339227 0.0 27 4.604662128311673E-5 0.0 0.0 9.145503639524946 0.0 28 4.604662128311673E-5 0.0 0.0 9.304640762679398 0.0 29 4.604662128311673E-5 0.0 0.0 9.471974184422244 0.0 30 4.604662128311673E-5 0.0 0.0 9.724954321751687 0.0 31 4.604662128311673E-5 0.0 0.0 9.90729894203283 0.0 32 4.604662128311673E-5 0.0 0.0 10.091761706892996 0.0 33 4.604662128311673E-5 0.0 0.0 10.265357469130345 0.0 34 4.604662128311673E-5 0.0 0.0 10.441163469189284 0.0 35 4.604662128311673E-5 0.0 0.0 10.639256033949254 0.0 36 4.604662128311673E-5 0.0 0.0 10.81400296171868 0.0 37 4.604662128311673E-5 0.0 0.0 10.998189446851148 0.0 38 4.604662128311673E-5 0.0 0.0 11.194670379866206 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGTCGA 20 7.858029E-4 44.000004 28 CTATGCG 60 0.0 44.0 1 CGTTTTT 7025 0.0 41.02491 1 GCGTAAG 130 0.0 40.615387 1 TCGCGAG 55 7.8216544E-11 40.0 1 CGGGTAT 170 0.0 37.52941 6 TCGATTG 135 0.0 37.48148 1 AGGGCGA 2525 0.0 37.29109 6 TAGGGCG 875 0.0 37.211426 5 GGCGATT 1355 0.0 36.206642 8 GGGCGAT 4865 0.0 36.176773 7 CGTTCGA 140 0.0 36.142857 14 CGGTAGT 860 0.0 36.069767 12 GCGCGAC 405 0.0 35.851852 9 AAGGGAT 3780 0.0 35.79365 5 ACGGGAT 1065 0.0 35.73709 5 ACGCCGG 940 0.0 35.57447 27 CGTTAGG 235 0.0 35.57447 2 AGGGATT 3935 0.0 35.501904 6 TAACGGG 480 0.0 35.291664 3 >>END_MODULE