##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546514_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1387362 Sequences flagged as poor quality 0 Sequence length 50 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.422406697026442 31.0 31.0 33.0 30.0 34.0 2 31.80298941444266 31.0 31.0 34.0 30.0 34.0 3 31.94117901456145 33.0 31.0 34.0 30.0 34.0 4 35.6074405958935 37.0 35.0 37.0 33.0 37.0 5 35.484724967239984 37.0 35.0 37.0 33.0 37.0 6 35.53073458837708 37.0 35.0 37.0 33.0 37.0 7 36.003882187922116 37.0 35.0 37.0 35.0 37.0 8 36.00020110108249 37.0 35.0 37.0 35.0 37.0 9 37.70166690452816 39.0 37.0 39.0 35.0 39.0 10 37.06691836737636 39.0 37.0 39.0 33.0 39.0 11 36.822114920258734 39.0 37.0 39.0 32.0 39.0 12 36.18678758680143 38.0 35.0 39.0 32.0 39.0 13 35.8895839730366 38.0 35.0 39.0 31.0 39.0 14 36.907695323931314 39.0 35.0 41.0 31.0 41.0 15 37.17221028109462 39.0 35.0 41.0 32.0 41.0 16 37.280062449454434 39.0 35.0 41.0 32.0 41.0 17 37.23480605638615 39.0 35.0 41.0 32.0 41.0 18 37.19328985513514 39.0 35.0 41.0 32.0 41.0 19 37.18030405907038 39.0 35.0 41.0 32.0 41.0 20 36.99461712227955 38.0 35.0 41.0 32.0 41.0 21 36.87910797614465 38.0 35.0 41.0 32.0 41.0 22 36.8028877827128 38.0 35.0 41.0 32.0 41.0 23 36.72515104204959 38.0 35.0 41.0 31.0 41.0 24 36.672843136830906 38.0 35.0 41.0 31.0 41.0 25 36.51867573135202 38.0 35.0 40.0 31.0 41.0 26 36.39170382351542 38.0 35.0 40.0 31.0 41.0 27 36.279516809599805 38.0 35.0 40.0 31.0 41.0 28 36.38345795834108 38.0 35.0 40.0 31.0 41.0 29 36.33557355614468 38.0 35.0 40.0 31.0 41.0 30 36.33899515771659 38.0 35.0 40.0 31.0 41.0 31 36.202138302764524 38.0 35.0 40.0 30.0 41.0 32 36.001522313570646 38.0 35.0 40.0 30.0 41.0 33 35.91211306061432 38.0 35.0 40.0 30.0 41.0 34 35.85013356283363 38.0 35.0 40.0 30.0 41.0 35 35.657715145722605 38.0 35.0 40.0 29.0 41.0 36 35.51666616211198 38.0 35.0 40.0 28.0 41.0 37 35.42126424105605 38.0 34.0 40.0 27.0 41.0 38 35.410393970715646 38.0 34.0 40.0 28.0 41.0 39 35.334454886323826 38.0 34.0 40.0 27.0 41.0 40 35.24432556174956 37.0 34.0 40.0 27.0 41.0 41 35.27796350195551 37.0 34.0 40.0 27.0 41.0 42 35.10687765702102 37.0 34.0 40.0 27.0 41.0 43 35.11720084592197 37.0 34.0 40.0 27.0 41.0 44 34.7944422580408 37.0 34.0 40.0 26.0 41.0 45 34.73396417085087 37.0 34.0 40.0 26.0 41.0 46 34.76015416308073 36.0 34.0 40.0 26.0 41.0 47 34.66621256744815 36.0 34.0 40.0 26.0 41.0 48 34.679868700454534 36.0 34.0 40.0 26.0 41.0 49 34.69333310267976 36.0 34.0 40.0 26.0 41.0 50 34.121451358765775 35.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 4.0 13 12.0 14 14.0 15 34.0 16 93.0 17 196.0 18 565.0 19 1079.0 20 1896.0 21 3182.0 22 4721.0 23 7088.0 24 9933.0 25 13849.0 26 18694.0 27 22503.0 28 25686.0 29 28585.0 30 33903.0 31 41860.0 32 51655.0 33 67123.0 34 112647.0 35 189846.0 36 98107.0 37 121825.0 38 183425.0 39 348835.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.405079568274175 24.139049505464328 27.496788869811915 13.959082056449578 2 31.168865804310624 25.618836323901046 29.687709480294256 13.524588391494072 3 29.609575583012944 26.606033609108508 30.159468112864555 13.624922695013991 4 25.165746214758656 28.93448141148453 30.614864757720046 15.284907616036767 5 23.14839241668721 32.81364200547514 29.448478479301006 14.589487098536647 6 20.339176076611583 41.37852990063156 27.148934452579788 11.13335957017707 7 86.23495526041509 4.439937089238425 7.164460321098604 2.160647329247882 8 86.2594622023668 3.9482125069015876 6.514882200896377 3.2774430898352414 9 80.32640363510029 5.836976938967624 9.568230930355595 4.268388495576497 10 44.60155316348581 27.18973130300527 14.952333997903935 13.256381535604984 11 38.52599393669424 23.108100120948965 24.37143297855931 13.994472963797481 12 35.029934508801595 21.738594541294916 26.207363326947114 17.02410762295637 13 22.730621135651692 34.19086006391987 27.25128697484867 15.82723182557977 14 17.345508958728868 38.15456960764386 28.406356812425308 16.093564621201963 15 15.553042392684821 23.83963233820733 44.61229297039994 15.995032298707907 16 17.121054202147672 21.102927714612335 42.49676724603961 19.279250837200383 17 18.23813827969917 21.186323396489165 29.6685364021791 30.907001921632567 18 21.376396355096936 23.064852576328313 34.03423187315207 21.52451919542268 19 27.014939143496797 26.115894770074426 26.59810489259472 20.271061193834054 20 28.23675435827131 24.73528898730108 25.498175674409417 21.52978098001819 21 22.35270967490821 29.02479670050066 28.290165075877816 20.332328548713313 22 22.402876826668166 25.199911775008978 26.94790544933478 25.449305948988076 23 19.849397633782676 30.378300688645073 25.411968902132248 24.360332775440007 24 19.873688338011274 26.08035970424446 34.92988852224582 19.116063435498447 25 19.217478927633884 25.818423742325365 33.415287430389476 21.548809899651282 26 17.48145040731979 32.21394272006874 28.724802899315392 21.579803973296084 27 19.51574282703433 30.571617213099394 28.460055846995953 21.452584112870323 28 17.95738963587009 27.686933907660727 35.706037789704496 18.649638666764695 29 18.529266334237207 25.08314340453321 34.615695110576766 21.771895150652824 30 20.961940719149002 28.226591185285454 30.52937877785322 20.28208931771232 31 26.70283602981774 26.718116828917037 24.706168973923173 21.87287816734205 32 28.77691619058328 25.936273301416644 25.70734963189132 19.579460876108758 33 25.859364751232917 27.513439174490866 25.282514585234424 21.344681489041793 34 22.012423577984695 27.563390088527722 27.897837766927445 22.526348566560134 35 20.682345343176475 26.630468471819178 29.241178582086004 23.446007602918346 36 27.351765436850656 25.971592129523515 26.078918119423772 20.59772431420206 37 21.402705278074503 30.18411921329833 27.352702466984102 21.06047304164306 38 20.975924091909683 31.074009523109325 25.64175752254999 22.308308862431005 39 20.204099578913073 29.38713904518071 27.28538045585795 23.123380920048263 40 22.679228636794146 25.594257302708307 27.769392559404103 23.957121501093443 41 18.065508497421725 24.71950363351454 28.22486128350063 28.990126585563104 42 22.664236154658987 26.030408790207606 25.75852589302576 25.546829162107652 43 22.143175321221136 26.499644649341704 27.42218685534129 23.934993174095872 44 21.086493647656486 29.447757686890657 28.09583944204901 21.36990922340384 45 18.99223129940131 31.740886661159813 26.259188301250862 23.007693738188014 46 23.081502881007264 29.66803184749186 26.925128409167904 20.325336862332975 47 21.729945032370786 27.074116200386054 27.84240883057198 23.35352993667118 48 23.317922791600175 23.670246121776437 29.13796110892471 23.873869977698682 49 21.968166923989557 22.744748666894438 30.61407188606867 24.673012523047337 50 20.062824266485606 28.604214329064803 28.327285885010546 23.005675519439052 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1418.0 1 1610.0 2 1802.0 3 6266.0 4 10730.0 5 7735.5 6 4741.0 7 5016.0 8 5291.0 9 5700.0 10 6109.0 11 6237.5 12 6366.0 13 6191.5 14 6017.0 15 5713.5 16 5410.0 17 5336.0 18 5262.0 19 5585.0 20 5908.0 21 6011.0 22 6114.0 23 6573.5 24 7033.0 25 8001.5 26 8970.0 27 11182.5 28 13395.0 29 14978.0 30 16561.0 31 20138.5 32 23716.0 33 27573.0 34 31430.0 35 33298.0 36 35166.0 37 39248.5 38 43331.0 39 53459.0 40 63587.0 41 80801.5 42 98016.0 43 111670.5 44 125325.0 45 132598.0 46 139871.0 47 138090.0 48 136309.0 49 133530.5 50 130752.0 51 117175.5 52 103599.0 53 91190.5 54 78782.0 55 69981.5 56 61181.0 57 56238.0 58 51295.0 59 48097.0 60 44899.0 61 39232.0 62 33565.0 63 29387.0 64 25209.0 65 21466.0 66 17723.0 67 14614.5 68 11506.0 69 9798.5 70 8091.0 71 7028.0 72 5965.0 73 4567.0 74 3169.0 75 2444.0 76 1719.0 77 1371.5 78 1024.0 79 820.5 80 617.0 81 415.5 82 214.0 83 142.0 84 70.0 85 46.0 86 22.0 87 35.0 88 48.0 89 32.5 90 17.0 91 12.5 92 8.0 93 8.5 94 9.0 95 4.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1387362.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.709496211355255 #Duplication Level Percentage of deduplicated Percentage of total 1 79.97867463897089 18.16275408702924 2 6.7669861152877635 3.0734969109484216 3 2.299575970628881 1.5666663537816046 4 1.2141354399463273 1.1028961669413306 5 0.8221131543530519 0.9334887782042975 6 0.5964398320313411 0.8126908863490262 7 0.48962394048126867 0.7783379114943741 8 0.3991896996577214 0.7252317577591252 9 0.33554848940111354 0.6858123433902509 >10 4.585228019371906 25.889532086931165 >50 2.1478568047057998 34.756565429700274 >100 0.35951927316520305 10.169517535128868 >500 0.004150755374016426 0.5761556793062473 >1k 6.38577749848681E-4 0.3062775722866334 >5k 3.192888749243405E-4 0.46057650074921763 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6352 0.4578473390506588 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 3095 0.22308525100154109 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.05903289840719293 0.0 2 0.0 0.0 0.0 0.22640089608912453 0.0 3 0.0 0.0 0.0 0.3582338279410853 0.0 4 0.0 0.0 0.0 0.5999155231295077 0.0 5 0.0 0.0 0.0 1.0305169090691542 0.0 6 0.0 0.0 0.0 1.7630582357020013 0.0 7 0.0 0.0 0.0 2.2088683414999113 0.0 8 0.0 0.0 0.0 3.6314242425552954 0.0 9 0.0 0.0 0.0 4.410744996619483 0.0 10 0.0 0.0 0.0 5.532442145597184 0.0 11 0.0 0.0 0.0 6.104751319410507 0.0 12 0.0 0.0 0.0 6.695368620446574 0.0 13 0.0 0.0 0.0 6.949736262057055 0.0 14 0.0 0.0 0.0 7.059440866911448 0.0 15 0.0 0.0 0.0 7.176065078905145 0.0 16 0.0 0.0 0.0 7.4080160765539205 0.0 17 0.0 0.0 0.0 7.654455001650614 0.0 18 0.0 0.0 0.0 8.076695195630268 0.0 19 0.0 0.0 0.0 8.234909129700828 0.0 20 0.0 0.0 0.0 8.431252982278599 0.0 21 0.0 0.0 0.0 8.624281189768784 0.0 22 0.0 0.0 0.0 8.81911137828483 0.0 23 0.0 0.0 0.0 9.033042565675 0.0 24 0.0 0.0 0.0 9.1982481861259 0.0 25 0.0 0.0 0.0 9.32517972958752 0.0 26 0.0 0.0 0.0 9.459102959429478 0.0 27 0.0 0.0 0.0 9.60189193591867 0.0 28 7.207924103442361E-5 0.0 0.0 9.73451773942201 0.0 29 7.207924103442361E-5 0.0 0.0 9.885523749389128 0.0 30 7.207924103442361E-5 0.0 0.0 10.10356345351826 0.0 31 7.207924103442361E-5 0.0 0.0 10.275904918831566 0.0 32 7.207924103442361E-5 0.0 0.0 10.435560437722815 0.0 33 7.207924103442361E-5 0.0 0.0 10.586782685413036 0.0 34 7.207924103442361E-5 0.0 0.0 10.748384343812214 0.0 35 7.207924103442361E-5 0.0 0.0 10.933123438583442 0.0 36 1.4415848206884721E-4 0.0 0.0 11.088598361494693 0.0 37 1.4415848206884721E-4 0.0 0.0 11.249767544447664 0.0 38 1.4415848206884721E-4 0.0 0.0 11.416126432755114 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGAACGG 70 0.0 44.0 2 CGTATAT 20 7.857047E-4 44.0 35 CTATCGA 20 7.857047E-4 44.0 44 GCGAAGT 25 4.443319E-5 44.0 9 GCTATCG 20 7.857047E-4 44.0 43 TTCACGA 20 7.857047E-4 44.0 23 TCCGTGC 25 4.443319E-5 44.0 20 CGTAACA 35 1.4463694E-7 44.0 35 CGGTCTA 85 0.0 44.0 31 CGGTCGT 20 7.857047E-4 44.0 14 GCGATAA 130 0.0 43.999996 9 CGCATGG 185 0.0 41.621624 2 CGAGGGT 160 0.0 41.25 4 CGTTTTT 4370 0.0 40.828377 1 AGGGCGA 1335 0.0 39.220974 6 AGGGTAC 610 0.0 38.590164 6 TCGTTAG 40 4.1253588E-7 38.5 1 GGCGATA 550 0.0 38.4 8 CTTCGCA 35 7.291299E-6 37.714287 20 TTACGAG 100 0.0 37.399998 1 >>END_MODULE