##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546512_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1712459 Sequences flagged as poor quality 0 Sequence length 50 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.330807336117243 31.0 31.0 33.0 30.0 34.0 2 31.734105166897425 31.0 31.0 34.0 30.0 34.0 3 31.860709657866263 31.0 31.0 34.0 30.0 34.0 4 35.56437088420803 37.0 35.0 37.0 33.0 37.0 5 35.45802790023002 37.0 35.0 37.0 33.0 37.0 6 35.486065359813 37.0 35.0 37.0 33.0 37.0 7 35.94286344957748 37.0 35.0 37.0 35.0 37.0 8 35.92587034200527 37.0 35.0 37.0 35.0 37.0 9 37.6017948458912 39.0 37.0 39.0 35.0 39.0 10 36.99950305379574 39.0 37.0 39.0 33.0 39.0 11 36.77989078862618 39.0 37.0 39.0 32.0 39.0 12 36.44448071457477 39.0 35.0 39.0 32.0 39.0 13 36.36255057785325 39.0 35.0 39.0 32.0 39.0 14 37.426292833872225 40.0 36.0 41.0 32.0 41.0 15 37.546191178883696 40.0 36.0 41.0 32.0 41.0 16 37.571458937119075 40.0 36.0 41.0 32.0 41.0 17 37.47348812438721 39.0 35.0 41.0 32.0 41.0 18 37.3817241755861 39.0 36.0 41.0 32.0 41.0 19 37.31567295917742 39.0 36.0 41.0 32.0 41.0 20 37.12894732078257 39.0 35.0 41.0 32.0 41.0 21 37.027386349103836 39.0 35.0 41.0 31.0 41.0 22 36.94779145077342 39.0 35.0 41.0 31.0 41.0 23 36.84693764931014 38.0 35.0 41.0 31.0 41.0 24 36.77178373321639 38.0 35.0 41.0 31.0 41.0 25 36.57856392474214 38.0 35.0 41.0 31.0 41.0 26 36.46847895336472 38.0 35.0 40.0 31.0 41.0 27 36.38096211354549 38.0 35.0 40.0 30.0 41.0 28 36.38577974713555 38.0 35.0 40.0 30.0 41.0 29 36.27713189045694 38.0 35.0 40.0 30.0 41.0 30 36.213234302251905 38.0 35.0 40.0 30.0 41.0 31 36.10377825104134 38.0 35.0 40.0 30.0 41.0 32 35.847225539414374 38.0 35.0 40.0 29.0 41.0 33 35.717688423489264 38.0 35.0 40.0 28.0 41.0 34 35.54466355106896 38.0 35.0 40.0 27.0 41.0 35 35.32336540612067 38.0 34.0 40.0 26.0 41.0 36 35.166389969044516 38.0 34.0 40.0 25.0 41.0 37 35.12699515725632 38.0 34.0 40.0 25.0 41.0 38 35.05154517568012 38.0 34.0 40.0 25.0 41.0 39 34.92061999732548 38.0 34.0 40.0 24.0 41.0 40 34.77241615711675 37.0 34.0 40.0 24.0 41.0 41 34.72555430524176 37.0 34.0 40.0 24.0 41.0 42 34.50450142163987 37.0 33.0 40.0 23.0 41.0 43 34.51090741442569 37.0 33.0 40.0 23.0 41.0 44 34.232054022899234 36.0 33.0 40.0 23.0 41.0 45 34.11879934059735 36.0 33.0 40.0 23.0 41.0 46 34.100118601379656 36.0 33.0 40.0 23.0 41.0 47 33.97552233367339 36.0 33.0 40.0 23.0 41.0 48 33.91439853450506 36.0 33.0 40.0 23.0 41.0 49 33.88509097152107 35.0 33.0 40.0 23.0 41.0 50 33.37709632756171 35.0 32.0 39.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 1.0 11 6.0 12 10.0 13 10.0 14 21.0 15 71.0 16 172.0 17 354.0 18 862.0 19 1586.0 20 2775.0 21 4452.0 22 6586.0 23 9727.0 24 13651.0 25 19875.0 26 27727.0 27 34664.0 28 37964.0 29 40245.0 30 44897.0 31 52736.0 32 64064.0 33 81125.0 34 124408.0 35 171000.0 36 144357.0 37 182983.0 38 255659.0 39 390470.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.640303797054415 22.905599491725056 25.79600445908486 16.658092252135674 2 35.79151384062334 24.44963645844952 26.20202877849922 13.556820922427923 3 29.959666187628436 24.738110518266424 31.276894804488748 14.025328489616392 4 26.187196306597706 26.897811860021175 31.1813596705089 15.73363216287222 5 22.890007877560866 31.04915212568593 30.188576777604602 15.872263219148605 6 20.680728706497497 39.42021385621495 28.629882525654626 11.26917491163292 7 83.12794642090701 4.298555469065245 10.008239613327968 2.5652584966997747 8 82.55432684811724 3.8659027748985526 9.989903407906409 3.5898669690778 9 76.68160230405516 5.451400588276858 13.174388408715188 4.692608698952792 10 40.85651101719808 24.451913885237545 19.06504038928815 15.626534708276226 11 32.18354424835865 25.18273430195993 25.45993801895403 17.173783430727394 12 28.033430289425908 21.091599857281253 30.908827598208187 19.966142255084648 13 24.176520430562135 24.676736786106996 32.006372123361785 19.140370659969086 14 20.860470236075727 27.79324935662693 32.3412122567606 19.005068150536744 15 19.908914607590606 22.169348288046603 37.96324466746357 19.95849243689922 16 22.713186125916007 20.71091921032854 35.292874165162495 21.283020498592958 17 22.05693683761188 21.030109334004493 31.521280217511777 25.39167361087185 18 24.594632630620644 21.38258492612086 32.192945933304095 21.829836509954397 19 27.874886347643944 24.477315953257857 27.12158364083461 20.526214058263584 20 28.357525640029923 23.90562343390411 26.4235815280833 21.31326939798267 21 25.959512023353554 25.3119052777322 28.434549381912213 20.294033317002043 22 24.59031135927926 22.722821393096126 28.124468965388367 24.56239828223625 23 23.289375103287142 25.741463007289518 27.270083546525786 23.699078342897554 24 23.251301199036007 23.65031805141028 31.310238668487827 21.788142081065885 25 24.20700291218651 23.747955425502155 29.26902191526921 22.77601974704212 26 21.669891074764415 25.52078619108545 28.65341593579759 24.155906798352543 27 22.987294878300734 23.360092124833354 28.957072840868015 24.695540155997893 28 22.624658458976242 25.086732003510743 30.38910712606842 21.899502411444598 29 23.005047128135622 23.84722787523672 30.074238273733854 23.073486722893804 30 24.20414152981181 23.317521762564827 29.704769574045276 22.773567133578087 31 26.165531554332105 23.97838430000368 26.09271229267387 23.763371852990346 32 26.521335693292507 24.065043309066088 26.41937704785925 22.994243949782156 33 25.39260793981053 23.468649468396034 26.599235368554808 24.53950722323863 34 22.501677412422723 26.46568472588249 28.227245148642975 22.805392713051816 35 22.980112224584648 25.179639337350558 28.744337820642713 23.09591061742208 36 25.705199365357068 26.160451140728043 26.236248575878314 21.89810091803658 37 23.506840163764505 27.494731260719234 26.291549169936328 22.70687940557993 38 25.10442585778696 27.012559132802593 25.68773909331552 22.195275916094925 39 23.866323222920958 25.514654657425375 25.443412075851157 25.17561004380251 40 25.376432370059664 23.29480589024321 28.007911430288257 23.320850309408865 41 22.465413770490272 23.76938659553309 27.674005625828123 26.091194008148516 42 24.375649285617936 25.550217552653816 25.372461472070277 24.70167168965797 43 23.42602071056884 24.01348003076278 27.76504430179058 24.795454956877798 44 23.709998312368356 25.041066676632838 27.89503281538419 23.35390219561461 45 22.38354319723859 25.311438113262856 28.10426410208945 24.2007545874091 46 24.140023206395014 24.783892636261655 27.544542672262516 23.531541485080812 47 22.727609828906854 25.969556059444344 27.816432393417884 23.48640171823092 48 23.81908121595904 24.441577871353417 28.079504385214477 23.659836527473065 49 24.136636263992305 23.158919425224195 28.214047752384147 24.490396558399354 50 22.38984991757467 24.61915876526095 29.106390284380527 23.884601032783852 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1370.0 1 1829.5 2 2289.0 3 15643.5 4 28998.0 5 19723.0 6 10448.0 7 10435.0 8 10422.0 9 10762.5 10 11103.0 11 10987.5 12 10872.0 13 10411.0 14 9950.0 15 9490.0 16 9030.0 17 8769.0 18 8508.0 19 7939.5 20 7371.0 21 7546.5 22 7722.0 23 7782.0 24 7842.0 25 8478.0 26 9114.0 27 10543.5 28 11973.0 29 14018.5 30 16064.0 31 18574.5 32 21085.0 33 23754.0 34 26423.0 35 30549.0 36 34675.0 37 38551.5 38 42428.0 39 48184.5 40 53941.0 41 63395.0 42 72849.0 43 83390.0 44 93931.0 45 104767.5 46 115604.0 47 125114.5 48 134625.0 49 139463.5 50 144302.0 51 131970.5 52 119639.0 53 110473.5 54 101308.0 55 98332.5 56 95357.0 57 95588.0 58 95819.0 59 92218.0 60 88617.0 61 83894.5 62 79172.0 63 72970.0 64 66768.0 65 58058.0 66 49348.0 67 43015.0 68 36682.0 69 32257.0 70 27832.0 71 24121.0 72 20410.0 73 16971.5 74 13533.0 75 10741.0 76 7949.0 77 5791.5 78 3634.0 79 2707.5 80 1781.0 81 1367.5 82 954.0 83 680.0 84 406.0 85 295.0 86 184.0 87 131.5 88 79.0 89 50.5 90 22.0 91 19.5 92 17.0 93 11.0 94 5.0 95 4.5 96 4.0 97 2.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1712459.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.84313015869871 #Duplication Level Percentage of deduplicated Percentage of total 1 75.7658926442027 21.853255031267313 2 6.497863278103881 3.748374325675579 3 2.7035705011611073 2.3393830757462437 4 1.7290288741205746 1.994824194576321 5 1.2709553136096945 1.832916476816708 6 1.0197474854486834 1.7647625671081257 7 0.8715159853108204 1.7596074299794582 8 0.710331030377048 1.6390536291942215 9 0.6505808352464122 1.688830893879047 >10 8.489585628513721 52.75872440097126 >50 0.24896477042290233 4.468846301482229 >100 0.0374821081937767 2.0378150741097096 >500 0.0036667188725723974 0.7929623512834487 >1k 6.111198120953995E-4 0.23960436192456314 >5k 0.0 0.0 >10k+ 2.0370660403179982E-4 1.0810398859857864 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 18399 1.0744198839213084 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCC 1896 0.11071797923337143 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.060848172131420374 0.0 2 0.0 0.0 0.0 0.21209266907996047 0.0 3 0.0 0.0 0.0 0.3765345622873307 0.0 4 0.0 0.0 0.0 0.5569184430108983 0.0 5 0.0 0.0 0.0 0.9543002197424872 0.0 6 0.0 0.0 0.0 1.7865537218701295 0.0 7 0.0 0.0 0.0 2.2613680093946775 0.0 8 0.0 0.0 0.0 3.4552068107907985 0.0 9 0.0 0.0 0.0 4.126463757672447 0.0 10 0.0 0.0 0.0 5.013258711595431 0.0 11 0.0 0.0 0.0 5.5027302843454935 0.0 12 0.0 0.0 0.0 5.941397721054927 0.0 13 0.0 0.0 0.0 6.208966170868909 0.0 14 0.0 0.0 0.0 6.3459037559439375 0.0 15 0.0 0.0 0.0 6.458198415261329 0.0 16 0.0 0.0 0.0 6.651896483361061 0.0 17 0.0 0.0 0.0 6.83963820447672 0.0 18 0.0 0.0 0.0 7.1838800228209845 0.0 19 0.0 0.0 0.0 7.310656780687888 0.0 20 5.839555866738999E-5 0.0 0.0 7.472412478196558 0.0 21 5.839555866738999E-5 0.0 0.0 7.6203284283010575 0.0 22 5.839555866738999E-5 0.0 0.0 7.777412481116336 0.0 23 5.839555866738999E-5 0.0 0.0 7.962292819857293 0.0 24 5.839555866738999E-5 5.839555866738999E-5 0.0 8.107288992028423 0.0 25 5.839555866738999E-5 5.839555866738999E-5 0.0 8.232080300900634 0.0 26 5.839555866738999E-5 5.839555866738999E-5 0.0 8.357981125387527 0.0 27 5.839555866738999E-5 5.839555866738999E-5 0.0 8.50134222191597 0.0 28 5.839555866738999E-5 5.839555866738999E-5 0.0 8.637228686934986 0.0 29 5.839555866738999E-5 5.839555866738999E-5 0.0 8.780472992346095 0.0 30 1.1679111733477998E-4 5.839555866738999E-5 0.0 8.973119940389815 0.0 31 1.1679111733477998E-4 5.839555866738999E-5 0.0 9.127225819713056 0.0 32 1.1679111733477998E-4 5.839555866738999E-5 0.0 9.317011385382074 0.0 33 1.1679111733477998E-4 5.839555866738999E-5 0.0 9.486767274428177 0.0 34 1.7518667600216999E-4 5.839555866738999E-5 0.0 9.642216251600768 0.0 35 1.7518667600216999E-4 5.839555866738999E-5 0.0 9.816585389781595 0.0 36 2.3358223466955996E-4 5.839555866738999E-5 0.0 9.980326536284956 0.0 37 2.3358223466955996E-4 5.839555866738999E-5 0.0 10.14179025600029 0.0 38 2.3358223466955996E-4 5.839555866738999E-5 0.0 10.341619857760099 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTATGCG 75 0.0 44.0 1 CGTTTTT 10215 0.0 42.040134 1 TACGGGT 115 0.0 40.17391 4 CGGGTAT 105 0.0 39.809525 6 TCGATAG 50 1.3478711E-9 39.6 1 TATACGG 90 0.0 39.11111 2 TTACGGG 510 0.0 37.960785 3 GCGATAT 200 0.0 37.399998 9 TAGCCGT 165 0.0 37.333332 44 CGTAAGG 295 0.0 37.288136 2 TATTACG 65 1.0913936E-11 37.23077 1 CGGTCTA 130 0.0 37.23077 31 GTTTTTT 12080 0.0 37.024834 2 TAGACGG 220 0.0 37.0 2 GGGCGAT 3615 0.0 36.575382 7 GCGCGAC 1245 0.0 36.2249 9 AGGGCGA 1905 0.0 35.800526 6 TGTTACG 80 0.0 35.75 1 TAACGGG 340 0.0 35.588238 3 TAGCATA 1440 0.0 35.444447 30 >>END_MODULE