##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546508_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1561631 Sequences flagged as poor quality 0 Sequence length 50 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.395867525683084 31.0 31.0 33.0 30.0 34.0 2 31.78568624726328 31.0 31.0 34.0 30.0 34.0 3 31.93259291087331 33.0 31.0 34.0 30.0 34.0 4 35.60488937527495 37.0 35.0 37.0 33.0 37.0 5 35.47896974381272 37.0 35.0 37.0 33.0 37.0 6 35.53195473194372 37.0 35.0 37.0 33.0 37.0 7 35.99326857625137 37.0 35.0 37.0 35.0 37.0 8 35.99234262127224 37.0 35.0 37.0 35.0 37.0 9 37.70456208925156 39.0 37.0 39.0 35.0 39.0 10 37.08160122333637 39.0 37.0 39.0 33.0 39.0 11 36.796724066056576 39.0 35.0 39.0 32.0 39.0 12 36.13465088743756 38.0 35.0 39.0 32.0 39.0 13 35.84484170716386 38.0 35.0 39.0 31.0 39.0 14 36.850931494059736 39.0 35.0 41.0 31.0 41.0 15 37.1019274079472 39.0 35.0 41.0 32.0 41.0 16 37.209787715535874 39.0 35.0 41.0 32.0 41.0 17 37.16000899060021 39.0 35.0 41.0 32.0 41.0 18 37.14129778417565 38.0 35.0 41.0 32.0 41.0 19 37.107651551486875 38.0 35.0 41.0 32.0 41.0 20 36.95430546652826 38.0 35.0 41.0 32.0 41.0 21 36.82659603965342 38.0 35.0 41.0 32.0 41.0 22 36.75678953606838 38.0 35.0 41.0 31.0 41.0 23 36.692353059077334 38.0 35.0 41.0 31.0 41.0 24 36.63724913247752 38.0 35.0 41.0 31.0 41.0 25 36.45641576018919 38.0 35.0 40.0 31.0 41.0 26 36.33556710900334 38.0 35.0 40.0 31.0 41.0 27 36.232953239273556 38.0 35.0 40.0 31.0 41.0 28 36.31987390106882 38.0 35.0 40.0 31.0 41.0 29 36.26344635832665 38.0 35.0 40.0 31.0 41.0 30 36.249901545243404 38.0 35.0 40.0 31.0 41.0 31 36.121376304645594 38.0 35.0 40.0 30.0 41.0 32 35.932623007611916 38.0 35.0 40.0 30.0 41.0 33 35.88973131296702 38.0 35.0 40.0 30.0 41.0 34 35.82237545233157 38.0 35.0 40.0 30.0 41.0 35 35.64940629380436 38.0 35.0 40.0 29.0 41.0 36 35.473729069159106 37.0 35.0 40.0 29.0 41.0 37 35.395698471662 37.0 34.0 40.0 28.0 41.0 38 35.36069020146245 37.0 34.0 40.0 28.0 41.0 39 35.28585049861331 37.0 34.0 40.0 28.0 41.0 40 35.15396915148329 37.0 34.0 40.0 27.0 41.0 41 35.18114074323576 37.0 34.0 40.0 28.0 41.0 42 34.98860037998733 37.0 34.0 40.0 27.0 41.0 43 34.98831734257325 36.0 34.0 40.0 27.0 41.0 44 34.74742176608943 36.0 34.0 40.0 26.0 41.0 45 34.64376027371383 36.0 34.0 40.0 26.0 41.0 46 34.65829251596568 36.0 34.0 40.0 26.0 41.0 47 34.55561909311483 35.0 34.0 40.0 26.0 41.0 48 34.532674492245604 35.0 34.0 40.0 26.0 41.0 49 34.54665538786051 36.0 34.0 40.0 26.0 41.0 50 34.00037781012288 35.0 33.0 39.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 3.0 11 0.0 12 4.0 13 5.0 14 10.0 15 31.0 16 87.0 17 252.0 18 570.0 19 1147.0 20 2085.0 21 3175.0 22 5103.0 23 7484.0 24 10834.0 25 15146.0 26 19977.0 27 25078.0 28 28476.0 29 32476.0 30 38728.0 31 47712.0 32 59349.0 33 77636.0 34 132481.0 35 225153.0 36 116054.0 37 142836.0 38 208636.0 39 361102.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.24146357238041 24.243499264550973 28.714017588021758 13.801019575046858 2 29.997227257911764 26.244292025452875 30.490045343618306 13.268435373017057 3 29.465219376408385 25.799500650281658 30.638031647681174 14.097248325628781 4 25.896578641177076 28.038890109123088 30.619141141537277 15.445390108162554 5 22.774138064626023 33.067478809014425 29.06422836124539 15.094154765114165 6 20.470136671211062 42.31735922250519 25.692881352893227 11.519622753390525 7 87.15125404144769 4.436067163113437 6.388320928567633 2.0243578668712394 8 87.10892650056256 3.493975209252378 5.793750252140231 3.603348038044839 9 81.58457407671851 5.189766340447903 9.208513406816335 4.0171461760172535 10 47.27877456326111 24.32578502860151 14.206557118807195 14.188883289330192 11 40.07393551997879 21.5333199712352 22.917001519565122 15.475742989220887 12 36.48185775000624 20.25203136976661 25.101448421554128 18.164662458673014 13 22.705876100051807 33.228912592027186 27.266108318802583 16.799102989118428 14 18.30823030536663 36.491655198955456 27.434521983746478 17.765592511931434 15 16.38850663184837 22.413809664382946 44.13910840653138 17.05857529723731 16 17.75150467684107 19.086647229723283 42.29251340425491 20.869334689180736 17 17.949502795474732 19.760942245639335 29.27900381075939 33.010551148126545 18 21.961910336052497 22.423991327016434 33.648730077720025 21.965368259211044 19 27.824947122591702 25.628525560775884 25.11899417980304 21.42753313682938 20 28.667271589767363 24.16358281822018 24.153080977516456 23.016064614496 21 22.840094747094543 28.787658544175933 26.749020735372188 21.623225973357343 22 22.746346608129578 23.380427258424046 26.08208981507155 27.791136318374825 23 20.203428338704853 30.386883969388418 23.82278528026147 25.586902411645262 24 21.13386581080934 24.75719296043688 33.52085095646795 20.588090272285832 25 20.34193737188875 24.500346112493926 31.579547281015806 23.578169234601514 26 18.333588408529288 30.08143409038371 27.479090771123264 24.105886729963736 27 20.423518744184765 28.448269789726254 27.596980336583993 23.531231129504985 28 18.5657815450641 27.137844983866227 34.29702663433295 19.99934683673672 29 19.001800041110865 24.74201651990771 32.935053159165 23.321130279816423 30 21.54888062544865 26.884456059081817 30.026043284232962 21.540620031236575 31 28.12104780194553 24.46730373564562 23.259912232787386 24.151736229621466 32 27.936817340332 26.017541916112062 25.080957025059057 20.96468371849688 33 26.013891886111377 25.619112325510958 24.378742481418467 23.988253306959198 34 20.756375866001637 27.66396158887727 26.97481031050229 24.604852234618804 35 21.848823441645305 25.300279003170402 28.678477822225606 24.172419732958684 36 28.375589367782787 25.383333194589504 24.39763298756236 21.84344445006535 37 21.957748021139437 30.12382566688289 26.121343646482426 21.797082665495243 38 22.174572610302945 30.707958538220616 22.51139994019074 24.6060689112857 39 21.533255935621153 28.667655803451648 23.956171464321596 25.842916796605603 40 23.09514859784418 24.031925595739327 26.03624031541382 26.836685491002676 41 19.36590654258272 22.58260754301112 26.493902849008506 31.557583065397655 42 23.57938591126841 25.649721349025473 23.56395332828306 27.206939411423058 43 22.579854011607097 25.115792399100684 26.41289779723891 25.891455792053307 44 22.099714977481877 28.22356882003495 26.97084010243137 22.705876100051807 45 19.75037636932156 30.688235569094108 25.575119858660596 23.98626820292374 46 24.15404151172716 27.65506063852472 26.59053259060559 21.600365259142524 47 23.259015734190726 25.204994009468308 26.757025187128075 24.778965069212894 48 23.758941773056502 23.04782627906336 27.925162858575426 25.268069089304706 49 22.832090295338656 21.859261246734984 29.44427973061498 25.864368727311383 50 21.49041610982364 26.540392704806703 27.39936643163462 24.569824753735038 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1526.0 1 1686.5 2 1847.0 3 6376.0 4 10905.0 5 7804.5 6 4704.0 7 5233.5 8 5763.0 9 6230.0 10 6697.0 11 6811.5 12 6926.0 13 6741.0 14 6556.0 15 6283.0 16 6010.0 17 5985.0 18 5960.0 19 5586.5 20 5213.0 21 4767.5 22 4322.0 23 4546.5 24 4771.0 25 5472.5 26 6174.0 27 7380.5 28 8587.0 29 9256.5 30 9926.0 31 12116.0 32 14306.0 33 18197.0 34 22088.0 35 24814.0 36 27540.0 37 30291.0 38 33042.0 39 43925.5 40 54809.0 41 77684.5 42 100560.0 43 116439.0 44 132318.0 45 140292.5 46 148267.0 47 153591.5 48 158916.0 49 158531.0 50 158146.0 51 144589.0 52 131032.0 53 112698.0 54 94364.0 55 86366.5 56 78369.0 57 74861.5 58 71354.0 59 67396.5 60 63439.0 61 56539.0 62 49639.0 63 46045.0 64 42451.0 65 35355.5 66 28260.0 67 24341.0 68 20422.0 69 17238.5 70 14055.0 71 12289.5 72 10524.0 73 7996.5 74 5469.0 75 4157.5 76 2846.0 77 2247.5 78 1649.0 79 1318.5 80 988.0 81 713.5 82 439.0 83 379.0 84 319.0 85 184.0 86 49.0 87 39.5 88 30.0 89 22.5 90 15.0 91 23.5 92 32.0 93 18.0 94 4.0 95 3.5 96 3.0 97 1.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1561631.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.109015441767234 #Duplication Level Percentage of deduplicated Percentage of total 1 79.78179526979542 17.638969435918195 2 7.131440160244545 3.1533824124977134 3 2.4540924656919714 1.627727046585253 4 1.3130756731806352 1.1612324133823828 5 0.8262464922333316 0.9133748227746371 6 0.6307267847767251 0.8366848934498887 7 0.47635332174286515 0.7372192062305086 8 0.4079830294682168 0.7216082478793425 9 0.31733539564550095 0.6314375846291126 >10 4.133175509298628 22.11309940525971 >50 1.8659335913718118 30.168387161857822 >100 0.654294982002135 18.454828105018407 >500 0.0060959159812170515 0.959274975846166 >1k 0.0011611268535651525 0.44854303915092353 >5k 2.9028171339128814E-4 0.43423124951998116 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6766 0.4332649646427357 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 3426 0.21938601372539349 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.06326718667854314 0.0 2 0.0 0.0 0.0 0.22444482723511508 0.0 3 0.0 0.0 0.0 0.35693451269858245 0.0 4 0.0 0.0 0.0 0.6133971469572518 0.0 5 0.0 0.0 0.0 1.0368006270367327 0.0 6 0.0 0.0 0.0 1.8910997540392065 0.0 7 0.0 0.0 0.0 2.418048822032862 0.0 8 0.0 0.0 0.0 4.183062452013312 0.0 9 0.0 0.0 0.0 5.186180346061265 0.0 10 0.0 0.0 0.0 6.581324269305617 0.0 11 0.0 0.0 0.0 7.295001187860641 0.0 12 0.0 0.0 0.0 7.995742912378148 0.0 13 0.0 0.0 0.0 8.31636923191202 0.0 14 0.0 0.0 0.0 8.451164199481184 0.0 15 0.0 0.0 0.0 8.565595841783367 0.0 16 0.0 0.0 0.0 8.814310166742336 0.0 17 0.0 0.0 0.0 9.070388587316723 0.0 18 0.0 0.0 0.0 9.51665278161102 0.0 19 0.0 0.0 0.0 9.675589175675944 0.0 20 0.0 0.0 0.0 9.885497918522365 0.0 21 0.0 0.0 0.0 10.084968856279108 0.0 22 0.0 0.0 0.0 10.281045906491354 0.0 23 0.0 0.0 0.0 10.507924087060259 0.0 24 0.0 0.0 0.0 10.67845092726771 0.0 25 0.0 0.0 0.0 10.80998007852047 0.0 26 0.0 0.0 0.0 10.945031188545821 0.0 27 0.0 0.0 0.0 11.09564295278462 0.0 28 0.0 0.0 0.0 11.239979226846803 0.0 29 0.0 0.0 0.0 11.393984878630098 0.0 30 0.0 0.0 0.0 11.613755106039775 0.0 31 0.0 0.0 0.0 11.773395891859217 0.0 32 0.0 0.0 0.0 11.924840119080628 0.0 33 0.0 0.0 0.0 12.084801082970305 0.0 34 0.0 0.0 0.0 12.241112016859297 0.0 35 0.0 0.0 0.0 12.439366277949144 0.0 36 0.0 0.0 0.0 12.594396499557194 0.0 37 0.0 0.0 0.0 12.760056633097063 0.0 38 0.0 0.0 0.0 12.93288875541021 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTCTAC 20 7.85735E-4 44.0 25 TAACGTG 25 4.443577E-5 44.0 1 TACGCTA 25 4.443577E-5 44.0 12 ATACCCG 20 7.85735E-4 44.0 1 ACGACTA 25 4.443577E-5 44.0 9 GTACGAC 25 4.443577E-5 44.0 13 ACGTTAG 85 0.0 41.411762 1 TACGCGG 85 0.0 41.411762 2 CGTTTTT 4545 0.0 40.950497 1 TTTACGT 55 7.8216544E-11 40.000004 15 ACGTAAG 95 0.0 39.36842 1 GCGTAAG 95 0.0 39.36842 1 TAATACG 45 2.3519533E-8 39.11111 1 CGACGGT 165 0.0 38.666668 28 CGGGATA 200 0.0 38.5 6 CGTAAGG 240 0.0 38.5 2 ACCGTTC 40 4.1258136E-7 38.5 33 ATTGCGA 40 4.1258136E-7 38.5 10 TAATCCG 40 4.1258136E-7 38.5 1 CGTTTGG 315 0.0 38.4127 2 >>END_MODULE