##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546502_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2013801 Sequences flagged as poor quality 0 Sequence length 50 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.377378400348395 31.0 31.0 33.0 30.0 34.0 2 31.76607221865517 31.0 31.0 34.0 30.0 34.0 3 31.904366419522088 31.0 31.0 34.0 30.0 34.0 4 35.593907739642596 37.0 35.0 37.0 33.0 37.0 5 35.48501962209772 37.0 35.0 37.0 33.0 37.0 6 35.518593445926385 37.0 35.0 37.0 33.0 37.0 7 35.96694410222261 37.0 35.0 37.0 35.0 37.0 8 35.9473840761823 37.0 35.0 37.0 35.0 37.0 9 37.631785365088206 39.0 37.0 39.0 35.0 39.0 10 37.04184574344734 39.0 37.0 39.0 33.0 39.0 11 36.803921042843854 39.0 37.0 39.0 32.0 39.0 12 36.36991738508423 38.0 35.0 39.0 32.0 39.0 13 36.229356823241226 39.0 35.0 39.0 32.0 39.0 14 37.24794704144054 39.0 35.0 41.0 32.0 41.0 15 37.40869728438907 39.0 35.0 41.0 32.0 41.0 16 37.462650976933666 39.0 35.0 41.0 32.0 41.0 17 37.398723607744756 39.0 35.0 41.0 32.0 41.0 18 37.34902405947758 39.0 35.0 41.0 32.0 41.0 19 37.323393920253295 39.0 35.0 41.0 32.0 41.0 20 37.158140253182914 39.0 35.0 41.0 32.0 41.0 21 37.03856885561185 39.0 35.0 41.0 32.0 41.0 22 36.965465803224845 39.0 35.0 41.0 31.0 41.0 23 36.86934657396635 38.0 35.0 41.0 31.0 41.0 24 36.805729563149484 38.0 35.0 41.0 31.0 41.0 25 36.608008934348526 38.0 35.0 41.0 31.0 41.0 26 36.50553604849734 38.0 35.0 40.0 31.0 41.0 27 36.411728864967294 38.0 35.0 40.0 31.0 41.0 28 36.46666924884832 38.0 35.0 40.0 31.0 41.0 29 36.34987071711654 38.0 35.0 40.0 30.0 41.0 30 36.306830714653536 38.0 35.0 40.0 30.0 41.0 31 36.18016626270421 38.0 35.0 40.0 30.0 41.0 32 36.00499850779695 38.0 35.0 40.0 30.0 41.0 33 35.91154538109774 38.0 35.0 40.0 29.0 41.0 34 35.78136221006942 38.0 35.0 40.0 29.0 41.0 35 35.581890166903285 38.0 35.0 40.0 28.0 41.0 36 35.43448632709985 38.0 34.0 40.0 27.0 41.0 37 35.38004152346731 38.0 34.0 40.0 27.0 41.0 38 35.30125965773182 38.0 34.0 40.0 27.0 41.0 39 35.17296694161936 38.0 34.0 40.0 26.0 41.0 40 35.03732295296308 37.0 34.0 40.0 26.0 41.0 41 34.988801276789516 37.0 34.0 40.0 26.0 41.0 42 34.79224163658673 37.0 34.0 40.0 25.0 41.0 43 34.79494895473783 37.0 34.0 40.0 25.0 41.0 44 34.53375134881748 36.0 34.0 40.0 24.0 41.0 45 34.43442077941167 36.0 33.0 40.0 24.0 41.0 46 34.43010456345984 36.0 34.0 40.0 24.0 41.0 47 34.31350466108618 36.0 33.0 40.0 24.0 41.0 48 34.25553418634711 36.0 33.0 40.0 24.0 41.0 49 34.226046168414854 36.0 33.0 40.0 24.0 41.0 50 33.68965255256105 35.0 33.0 39.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 5.0 11 7.0 12 9.0 13 9.0 14 27.0 15 70.0 16 175.0 17 409.0 18 904.0 19 1726.0 20 3047.0 21 4768.0 22 7444.0 23 10747.0 24 14857.0 25 21087.0 26 28574.0 27 35474.0 28 39308.0 29 43694.0 30 50658.0 31 61359.0 32 75231.0 33 96014.0 34 154851.0 35 226600.0 36 161190.0 37 208914.0 38 294462.0 39 472181.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.555797221274595 23.134609626273896 26.5315689087452 14.778024243706305 2 34.12526858413518 24.917953660763896 27.354391024733825 13.602386730367103 3 30.592794422090364 25.134310689089933 30.113452123620952 14.159442765198746 4 25.921677464655147 28.041896890507058 30.165592330125968 15.87083331471183 5 23.067373588552194 31.859602810804045 29.409460021124232 15.663563579519527 6 20.91889913650852 40.250104156269664 27.57213845856666 11.258858248655155 7 84.91171669891911 4.485497822277375 8.109738747771006 2.49304673103251 8 83.80406008339453 4.0649001564702765 8.183777841008123 3.947261919127064 9 77.9871496736768 5.590820542844104 11.584560738623132 4.837469044855972 10 43.84102500693962 22.997605026514538 17.239339934780052 15.9220300317658 11 35.40036974855013 24.272209617534205 24.062109413988768 16.265311219926897 12 31.025856080119134 21.100595341843608 28.298625335869833 19.574923242167426 13 24.74618892333453 26.552176704649565 30.21837808204485 18.483256289971052 14 20.402909721467015 29.689080500009684 30.974063474990825 18.933946303532473 15 19.26143645772348 21.862239615533014 39.538514480825064 19.337809445918438 16 21.604617338058727 20.096325307217544 37.3367080461277 20.962349308596036 17 21.239387605826 20.751106986241442 30.732927434240025 27.276577973692532 18 23.91328636742161 22.079937392026324 32.002367661948725 22.00440857860335 19 28.24390294770933 25.208548411685168 25.885427606799283 20.66212103380622 20 28.698366919074925 24.499590575235587 25.126663458802533 21.675379046886956 21 25.755772293290153 26.525014139927432 27.301704587493997 20.41750897928842 22 24.409462503991207 23.342822850917244 26.907226682278935 25.340487962812613 23 22.91686219244106 27.40389939224382 25.372020373413264 24.307218041901855 24 23.164453687330575 24.234072780776252 31.13803201011421 21.463441521778964 25 23.72394293179912 24.309055363464413 28.54716032021039 23.419841384526077 26 20.993087201764226 27.05456000866024 27.930515477944446 24.02183731163109 27 22.5300315175134 24.905042752486466 28.09428538370971 24.470640346290423 28 22.22995221474217 25.676519179402536 30.739879461774027 21.353649144081267 29 22.831600540470482 24.942236099793373 29.791871192833852 22.434292166902292 30 24.408221070502993 25.233178452091344 28.38651882683542 21.972081650570242 31 27.876885551253576 24.575417332695736 24.427935034295842 23.11976208175485 32 28.402359518145044 25.248969486061434 24.453011990757776 21.89565900503575 33 28.071542322205623 24.214905047718222 24.894167795129707 22.81938483494645 34 23.34475948715886 26.54994212437078 27.040109722857427 23.065188665612936 35 24.689579556271944 24.68977818563006 28.065732413480777 22.554909844617217 36 27.679845228004158 26.309203342336207 23.93667497433957 22.074276455320064 37 25.349724227964927 28.1232852699944 25.094684132146128 21.432306369894544 38 26.210683180711502 28.122093493845718 23.595926310494434 22.07129701494835 39 24.394763931490747 27.094037593585462 24.145682716415376 24.365515758508412 40 26.208100999056015 23.80036557733361 26.95360663739863 23.037926786211745 41 22.52640653172781 24.29867697950294 26.8329889596837 26.341927529085545 42 25.03916722655317 25.87013314622448 24.798925017913888 24.291774609308465 43 23.894913151796032 24.377334205316213 26.969645958066362 24.758106684821392 44 23.6935029826681 26.080084377751326 27.354887598129107 22.871525041451466 45 21.74241645525054 26.742761573760266 27.272208127814018 24.24261384317517 46 24.1844650985872 26.281891805595485 26.643347580024045 22.89029551579327 47 23.676669144567906 25.528292020909717 27.213860753867934 23.581178080654443 48 24.299074238219166 24.251502506950786 27.448044767084735 24.001378487745313 49 24.38974854019836 23.211429530524615 27.49998634423163 24.898835585045394 50 22.188488336235803 25.686649276666362 28.031369534526995 24.093492852570837 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1637.0 1 2153.5 2 2670.0 3 13149.0 4 23628.0 5 16167.5 6 8707.0 7 8955.0 8 9203.0 9 9560.0 10 9917.0 11 9868.0 12 9819.0 13 9734.5 14 9650.0 15 9245.5 16 8841.0 17 8342.5 18 7844.0 19 8135.0 20 8426.0 21 8536.5 22 8647.0 23 8928.0 24 9209.0 25 9985.5 26 10762.0 27 12540.0 28 14318.0 29 16298.0 30 18278.0 31 20828.5 32 23379.0 33 27671.5 34 31964.0 35 36451.5 36 40939.0 37 44956.0 38 48973.0 39 56320.0 40 63667.0 41 79133.0 42 94599.0 43 111603.5 44 128608.0 45 138215.5 46 147823.0 47 157642.5 48 167462.0 49 171770.5 50 176079.0 51 160703.5 52 145328.0 53 132341.5 54 119355.0 55 113197.5 56 107040.0 57 108206.5 58 109373.0 59 104043.0 60 98713.0 61 94418.5 62 90124.0 63 82347.0 64 74570.0 65 65057.0 66 55544.0 67 47266.5 68 38989.0 69 35589.5 70 32190.0 71 28001.5 72 23813.0 73 19396.5 74 14980.0 75 12202.5 76 9425.0 77 6934.5 78 4444.0 79 3520.5 80 2597.0 81 2005.0 82 1413.0 83 953.0 84 493.0 85 362.5 86 232.0 87 145.5 88 59.0 89 43.5 90 28.0 91 28.5 92 29.0 93 20.0 94 11.0 95 6.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2013801.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.541263651188224 #Duplication Level Percentage of deduplicated Percentage of total 1 77.78465793658314 19.089337984391776 2 6.578883945700905 3.2290825088403077 3 2.54154217927562 1.8711797010665543 4 1.507576889960006 1.4799136772378751 5 1.0276924720678808 1.2610435954679626 6 0.7581629747904037 1.1163766472940282 7 0.6316560051375981 1.085114559125667 8 0.5401301461175883 1.0604381057461243 9 0.46731851413925807 1.0321728178115759 >10 6.588412378754533 39.84550005253609 >50 1.47444991172587 23.64406693821422 >100 0.09422538318432601 3.4869421705929744 >500 0.004273712070066665 0.7730324557471335 >1k 8.140403942984123E-4 0.3096524890575157 >5k 0.0 0.0 >10k+ 2.0351009857460308E-4 0.716146296870277 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 14339 0.7120365915003518 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 2052 0.10189686071265235 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.04697584319403953 0.0 2 0.0 0.0 0.0 0.17752498881468426 0.0 3 0.0 0.0 0.0 0.32699358079571916 0.0 4 0.0 0.0 0.0 0.4958285351929014 0.0 5 0.0 0.0 0.0 0.7934746283272279 0.0 6 0.0 0.0 0.0 1.589084522254185 0.0 7 0.0 0.0 0.0 2.067334359253968 0.0 8 0.0 0.0 0.0 3.6039310736264407 0.0 9 0.0 0.0 0.0 4.496621066331778 0.0 10 0.0 0.0 0.0 5.697285878793386 0.0 11 0.0 0.0 0.0 6.278326408617336 0.0 12 0.0 0.0 0.0 6.804346606243616 0.0 13 4.965733952858301E-5 0.0 0.0 7.098020112215655 0.0 14 4.965733952858301E-5 0.0 0.0 7.244956179880733 0.0 15 4.965733952858301E-5 0.0 0.0 7.3522656906020005 0.0 16 4.965733952858301E-5 0.0 0.0 7.533068063825572 0.0 17 4.965733952858301E-5 0.0 0.0 7.715608443932643 0.0 18 4.965733952858301E-5 0.0 0.0 8.044141402253748 0.0 19 4.965733952858301E-5 0.0 0.0 8.17339945704665 0.0 20 4.965733952858301E-5 0.0 0.0 8.324357769213542 0.0 21 4.965733952858301E-5 0.0 0.0 8.478394836431207 0.0 22 4.965733952858301E-5 0.0 0.0 8.637099693564558 0.0 23 4.965733952858301E-5 0.0 0.0 8.817256521374256 0.0 24 4.965733952858301E-5 0.0 0.0 8.967469973448221 0.0 25 4.965733952858301E-5 0.0 0.0 9.088981483274663 0.0 26 4.965733952858301E-5 0.0 0.0 9.214316608244808 0.0 27 9.931467905716603E-5 0.0 0.0 9.364976976374528 0.0 28 9.931467905716603E-5 0.0 0.0 9.48544568207087 0.0 29 9.931467905716603E-5 0.0 0.0 9.625280750183359 0.0 30 9.931467905716603E-5 0.0 0.0 9.837863820705223 0.0 31 9.931467905716603E-5 0.0 0.0 9.983210853505387 0.0 32 9.931467905716603E-5 0.0 0.0 10.144994465689509 0.0 33 9.931467905716603E-5 0.0 0.0 10.298088043456131 0.0 34 9.931467905716603E-5 0.0 0.0 10.45406174691541 0.0 35 9.931467905716603E-5 0.0 0.0 10.634119260046052 0.0 36 9.931467905716603E-5 0.0 0.0 10.78036012495773 0.0 37 1.4897201858574905E-4 0.0 0.0 10.945321806871682 0.0 38 1.4897201858574905E-4 0.0 0.0 11.147228549394901 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGATAA 20 7.8578957E-4 44.0 26 ATCGCTA 25 4.4440363E-5 44.0 38 GTAATAG 265 0.0 41.509434 1 CGTTTTT 8020 0.0 41.25686 1 AACGTTG 95 0.0 39.36842 1 CGGTCTA 240 0.0 38.5 31 CACGACG 225 0.0 38.133335 26 TACGGGA 385 0.0 37.714287 4 CATACGA 210 0.0 37.714287 18 AGGGCGA 2255 0.0 37.365852 6 GGGCGAT 4440 0.0 37.36036 7 TAACGCC 190 0.0 37.05263 12 ATTAGCG 120 0.0 36.666664 1 TATTCGA 30 1.301443E-4 36.666664 27 TAATGCG 60 1.9826984E-10 36.666664 1 TCTATCG 30 1.301443E-4 36.666664 1 ATAGGGC 1225 0.0 36.636734 4 TTGATCC 1700 0.0 36.494118 17 ACGGGAT 350 0.0 36.45714 5 CATATGC 1615 0.0 36.371517 33 >>END_MODULE