##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546498_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1460130 Sequences flagged as poor quality 0 Sequence length 50 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.447193058152358 31.0 31.0 33.0 30.0 34.0 2 31.846999239793718 31.0 31.0 34.0 30.0 34.0 3 31.954795805852903 33.0 31.0 34.0 30.0 34.0 4 35.66242594837446 37.0 35.0 37.0 33.0 37.0 5 35.5656468944546 37.0 35.0 37.0 33.0 37.0 6 35.59357865395547 37.0 35.0 37.0 33.0 37.0 7 36.01507468513078 37.0 35.0 37.0 35.0 37.0 8 36.00621040592276 37.0 35.0 37.0 35.0 37.0 9 37.70432153301418 39.0 37.0 39.0 35.0 39.0 10 37.124151274201616 39.0 37.0 39.0 33.0 39.0 11 36.91700122591824 39.0 37.0 39.0 32.0 39.0 12 36.60350585221864 39.0 35.0 39.0 32.0 39.0 13 36.529850766712556 39.0 35.0 39.0 32.0 39.0 14 37.60627135939951 40.0 36.0 41.0 32.0 41.0 15 37.700840336134455 40.0 36.0 41.0 33.0 41.0 16 37.72823036304987 40.0 36.0 41.0 33.0 41.0 17 37.642564703142874 40.0 36.0 41.0 32.0 41.0 18 37.522158985843724 39.0 36.0 41.0 32.0 41.0 19 37.42668050105128 39.0 36.0 41.0 32.0 41.0 20 37.21515070575908 39.0 35.0 41.0 32.0 41.0 21 37.120190667954226 39.0 35.0 41.0 32.0 41.0 22 37.0476964379884 39.0 35.0 41.0 32.0 41.0 23 36.941228520748155 39.0 35.0 41.0 32.0 41.0 24 36.87081492743797 38.0 35.0 41.0 32.0 41.0 25 36.68993240327916 38.0 35.0 41.0 31.0 41.0 26 36.596126372309314 38.0 35.0 41.0 31.0 41.0 27 36.505976180203135 38.0 35.0 40.0 31.0 41.0 28 36.53998753535644 38.0 35.0 40.0 31.0 41.0 29 36.41760117249834 38.0 35.0 40.0 31.0 41.0 30 36.32898098114551 38.0 35.0 40.0 30.0 41.0 31 36.17005198167286 38.0 35.0 40.0 30.0 41.0 32 35.881033195674355 38.0 35.0 40.0 29.0 41.0 33 35.6566826241499 38.0 35.0 40.0 27.0 41.0 34 35.390309082068036 38.0 35.0 40.0 26.0 41.0 35 35.11511577736229 38.0 34.0 40.0 24.0 41.0 36 34.97025333360728 38.0 34.0 40.0 24.0 41.0 37 34.903948278577936 38.0 34.0 40.0 23.0 41.0 38 34.82146110277852 38.0 34.0 40.0 23.0 41.0 39 34.685281447542344 38.0 34.0 40.0 23.0 41.0 40 34.56042201721765 37.0 34.0 40.0 23.0 41.0 41 34.50432906658996 37.0 34.0 40.0 23.0 41.0 42 34.320806366556404 37.0 33.0 40.0 22.0 41.0 43 34.345085026675704 37.0 33.0 40.0 23.0 41.0 44 33.98448357338045 37.0 33.0 40.0 21.0 41.0 45 33.919122954805395 36.0 33.0 40.0 21.0 41.0 46 33.913378260839785 36.0 33.0 40.0 22.0 41.0 47 33.82813790552896 36.0 33.0 40.0 22.0 41.0 48 33.77339962880018 36.0 33.0 40.0 22.0 41.0 49 33.73671316937533 36.0 33.0 40.0 22.0 41.0 50 33.25563134789368 35.0 32.0 39.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 3.0 12 3.0 13 7.0 14 8.0 15 41.0 16 112.0 17 293.0 18 611.0 19 1268.0 20 2149.0 21 3613.0 22 5408.0 23 7942.0 24 11799.0 25 17918.0 26 26397.0 27 32925.0 28 33858.0 29 34485.0 30 37069.0 31 43209.0 32 52244.0 33 66462.0 34 104366.0 35 143093.0 36 119358.0 37 151324.0 38 216257.0 39 347908.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.25820303671591 22.038654092443824 25.877284899289787 18.825857971550477 2 36.49017553231562 24.01669714340504 26.31334196270195 13.179785361577393 3 28.9498195366166 24.504256470314285 33.35127694109429 13.194647051974826 4 25.62908782094745 26.87671645675385 32.63229986371077 14.861895858587934 5 22.505872764753825 30.37428174203667 32.01666974858403 15.103175744625478 6 20.473177045879474 38.58964612739961 30.215460267236477 10.72171655948443 7 82.36026929109052 4.038886948422401 11.460554882099538 2.140288878387541 8 81.99098710388802 3.70330039106107 11.420079034058611 2.885633470992309 9 76.68118592180149 5.245286378610124 13.977043139994382 4.096484559594009 10 38.92482176244581 25.496359913158418 20.47351948114209 15.105298843253683 11 31.2949531890996 25.342880428455 27.03204509187538 16.33012129057002 12 28.33117599117887 21.268585673878356 31.658619437995245 18.741618896947532 13 24.60000136974105 24.56733304568771 32.16446480792806 18.668200776643175 14 20.955873792059613 27.27907789032483 32.70866292727359 19.05638539034196 15 20.439138980775684 22.248977830741097 38.32508064350434 18.98680254497887 16 23.02007355509441 21.306116578660806 35.44917233397026 20.22463753227452 17 22.240074513913143 20.952997335853656 32.513543314636365 24.29338483559683 18 24.211063398464518 21.706354913603583 33.251696766726255 20.830884921205648 19 27.12094128604987 24.30495914747317 28.732441631909488 19.84165793456747 20 27.932786806654203 24.01614924698486 28.193996424975857 19.857067521385083 21 25.79010088142837 25.500811571572395 30.014313793977248 18.69477375302199 22 24.598426167533027 22.470533445652098 29.87117585420476 23.05986453261011 23 22.59339921787786 25.73209234794162 29.223493798497397 22.451014635683126 24 22.6613383739804 23.821029634347628 32.624149904460566 20.893482087211414 25 23.706450795477117 23.690561799291842 30.752946655434787 21.85004074979625 26 21.11394190928205 25.2527514673351 30.072116866306427 23.561189757076427 27 21.71834014779506 24.04148945641826 30.73281146199311 23.507358933793565 28 21.54267085807428 25.41506578181395 32.02687431940991 21.015389040701855 29 22.810777122584973 24.030120605699494 31.43261216467027 21.72649010704526 30 23.42866731044496 23.88739358824214 31.896201023196564 20.787738078116334 31 25.65326375048797 24.352694623081504 28.637792525323086 21.356249101107437 32 26.151849492853373 23.900200667063892 28.934546923904037 21.0134029161787 33 25.91406244649449 24.69492442453754 27.475224808749903 21.915788320218063 34 22.987679179251163 25.838315766404364 30.02739482100909 21.146610233335387 35 23.140473793429354 25.61128118729154 29.943840616931368 21.30440440234774 36 26.20965256518255 26.482299521275504 26.378336175546014 20.92971173799593 37 24.668899344578907 27.04211268859622 27.36982323491744 20.919164731907433 38 24.578427948196392 27.299487031976604 27.041907227438656 21.080177792388348 39 24.291193249916105 25.340003972249047 27.068137768554855 23.300665009279996 40 24.912028381034563 24.014094635409176 28.967078273852326 22.10679870970393 41 22.289933088149684 24.19620170806709 29.122886318341518 24.390978885441708 42 23.656386760083006 25.953237040537484 26.818844897372152 23.571531302007358 43 22.64072377117106 24.90908343777609 28.4060323395862 24.044160451466652 44 23.26443535849548 25.65956455932006 28.404868059693317 22.671132022491147 45 22.40560771986056 26.146439015704082 28.31919075698739 23.128762507447966 46 23.685219809195072 25.874887852451494 28.107154842377046 22.332737495976385 47 22.34492819132543 26.217254628012576 28.861265777704727 22.57655140295727 48 23.143144788477738 25.295418901056756 28.84181545478827 22.719620855677235 49 23.883489826248347 24.18092909535452 28.907152102894944 23.028428975502184 50 21.96407169224658 25.217138200023285 29.536890550841367 23.28189955688877 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1154.0 1 1659.0 2 2164.0 3 17228.5 4 32293.0 5 22142.5 6 11992.0 7 11917.5 8 11843.0 9 12060.5 10 12278.0 11 11982.0 12 11686.0 13 11315.0 14 10944.0 15 10467.5 16 9991.0 17 9299.0 18 8607.0 19 8193.0 20 7779.0 21 7699.0 22 7619.0 23 7969.0 24 8319.0 25 8890.0 26 9461.0 27 10394.0 28 11327.0 29 13444.0 30 15561.0 31 18128.5 32 20696.0 33 22850.0 34 25004.0 35 29429.5 36 33855.0 37 37209.0 38 40563.0 39 45254.0 40 49945.0 41 57263.5 42 64582.0 43 72395.5 44 80209.0 45 87418.5 46 94628.0 47 101335.5 48 108043.0 49 112759.5 50 117476.0 51 108284.5 52 99093.0 53 91961.5 54 84830.0 55 81866.5 56 78903.0 57 78187.5 58 77472.0 59 75437.5 60 73403.0 61 67809.0 62 62215.0 63 57623.0 64 53031.0 65 44789.0 66 36547.0 67 32033.5 68 27520.0 69 24188.0 70 20856.0 71 18220.5 72 15585.0 73 13097.5 74 10610.0 75 8315.0 76 6020.0 77 4421.0 78 2822.0 79 2342.5 80 1863.0 81 1321.5 82 780.0 83 541.5 84 303.0 85 243.0 86 183.0 87 108.0 88 33.0 89 24.5 90 16.0 91 16.0 92 16.0 93 11.5 94 7.0 95 5.0 96 3.0 97 1.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1460130.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.989873698845322 #Duplication Level Percentage of deduplicated Percentage of total 1 72.70799609097 23.2591961184627 2 6.852915834289586 4.384478240154821 3 3.296445178564759 3.1635859475236274 4 2.255386664980518 2.8859813821914697 5 1.69916268738908 2.7177999881683634 6 1.408770710603906 2.703983826171092 7 1.233489271849889 2.762141621075105 8 1.0641944859763421 2.723475775791264 9 0.9962883360864738 2.8684024235135155 >10 8.369283276436002 46.861525014352885 >50 0.08508486365733567 1.749447429935715 >100 0.026894622371062354 1.6029447058255406 >500 0.0032273501249953066 0.7149200567735327 >1k 6.454700249990613E-4 0.26932532802106796 >5k 0.0 0.0 >10k+ 2.1515667499968707E-4 1.3327921420393458 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 19364 1.3261832850499613 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCC 1504 0.10300452699417174 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.053419900967722055 0.0 2 0.0 0.0 0.0 0.19244861758884482 0.0 3 0.0 0.0 0.0 0.3749666125618952 0.0 4 0.0 0.0 0.0 0.5095436707690412 0.0 5 0.0 0.0 0.0 0.7998602864128537 0.0 6 0.0 0.0 0.0 1.4144630957517481 0.0 7 0.0 0.0 0.0 1.7727188674980996 0.0 8 0.0 0.0 0.0 2.6369569832823103 0.0 9 0.0 0.0 0.0 3.1962907412353694 0.0 10 0.0 0.0 0.0 3.981700259565929 0.0 11 0.0 0.0 0.0 4.413442638669159 0.0 12 0.0 0.0 0.0 4.8077910870949845 0.0 13 0.0 0.0 0.0 5.072425058042777 0.0 14 0.0 0.0 0.0 5.211042852348763 0.0 15 0.0 0.0 0.0 5.3152801462883446 0.0 16 0.0 0.0 0.0 5.470677268462397 0.0 17 0.0 0.0 0.0 5.621554245169951 0.0 18 0.0 0.0 0.0 5.9096107880805135 0.0 19 0.0 0.0 0.0 6.017477895803799 0.0 20 0.0 0.0 0.0 6.155547793689603 0.0 21 0.0 0.0 0.0 6.285810167587818 0.0 22 0.0 0.0 0.0 6.415867080328464 0.0 23 0.0 0.0 0.0 6.56934656503188 0.0 24 0.0 0.0 0.0 6.693034181887914 0.0 25 0.0 0.0 0.0 6.810626451069425 0.0 26 0.0 0.0 0.0 6.9215754761562325 0.0 27 0.0 0.0 0.0 7.0653297994014235 0.0 28 0.0 0.0 0.0 7.178812845431571 0.0 29 0.0 0.0 0.0 7.308595809962127 0.0 30 0.0 0.0 0.0 7.496250333874381 0.0 31 0.0 0.0 0.0 7.630690417976481 0.0 32 0.0 0.0 0.0 7.784375363837467 0.0 33 0.0 0.0 0.0 7.9313485785512245 0.0 34 0.0 0.0 0.0 8.07674659105696 0.0 35 0.0 0.0 0.0 8.246594481313307 0.0 36 0.0 0.0 0.0 8.393704670132111 0.0 37 0.0 0.0 0.0 8.551361865039414 0.0 38 0.0 0.0 0.0 8.740728565264737 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 11030 0.0 42.563915 1 GCGAACT 45 2.3517714E-8 39.11111 33 TACGTAG 130 0.0 38.923077 1 CCGGTAT 40 4.125559E-7 38.5 42 AGGGTAC 660 0.0 38.333332 6 CGGTCTA 75 0.0 38.13333 31 ACGTAGG 225 0.0 38.13333 2 GTTGATC 1135 0.0 37.991188 16 TAGCATA 1110 0.0 37.855858 30 GTTTTTT 12720 0.0 37.756287 2 ATAACGC 135 0.0 37.481483 11 CGCCGTT 100 0.0 37.399998 26 GTAGCAT 1125 0.0 37.35111 29 TATGGGC 755 0.0 37.006622 4 CATATGC 1120 0.0 36.732143 33 ATTTACG 30 1.3012678E-4 36.666664 1 GCCAGTA 1135 0.0 36.63436 25 GCGCGAC 1020 0.0 36.45098 9 CGTTAGG 230 0.0 36.347828 2 ATCCTGC 1175 0.0 36.323402 20 >>END_MODULE