##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546496_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1119442 Sequences flagged as poor quality 0 Sequence length 50 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.41755356686635 31.0 31.0 33.0 30.0 34.0 2 31.81038499538163 31.0 31.0 34.0 30.0 34.0 3 31.954313845648098 33.0 31.0 34.0 30.0 34.0 4 35.62721784603401 37.0 35.0 37.0 33.0 37.0 5 35.519663367999414 37.0 35.0 37.0 33.0 37.0 6 35.555047068092854 37.0 35.0 37.0 33.0 37.0 7 36.00104427027037 37.0 35.0 37.0 35.0 37.0 8 35.9923497599697 37.0 35.0 37.0 35.0 37.0 9 37.681292108032395 39.0 37.0 39.0 35.0 39.0 10 37.10011059081221 39.0 37.0 39.0 33.0 39.0 11 36.83036191245281 39.0 37.0 39.0 32.0 39.0 12 36.29563478947547 38.0 35.0 39.0 32.0 39.0 13 36.07367152563509 38.0 35.0 39.0 32.0 39.0 14 37.117280752374846 39.0 35.0 41.0 32.0 41.0 15 37.337266245147134 39.0 35.0 41.0 32.0 41.0 16 37.41777957232264 39.0 35.0 41.0 32.0 41.0 17 37.34378824450039 39.0 35.0 41.0 32.0 41.0 18 37.29958407849625 39.0 35.0 41.0 32.0 41.0 19 37.267054478927896 39.0 35.0 41.0 32.0 41.0 20 37.12131043859351 39.0 35.0 41.0 32.0 41.0 21 37.001846455644866 39.0 35.0 41.0 32.0 41.0 22 36.934846110830215 38.0 35.0 41.0 32.0 41.0 23 36.83907964861065 38.0 35.0 41.0 32.0 41.0 24 36.77150223057559 38.0 35.0 41.0 31.0 41.0 25 36.588312748673 38.0 35.0 40.0 31.0 41.0 26 36.48690508306817 38.0 35.0 40.0 31.0 41.0 27 36.410129332292335 38.0 35.0 40.0 31.0 41.0 28 36.48079132281976 38.0 35.0 40.0 31.0 41.0 29 36.410163277775894 38.0 35.0 40.0 31.0 41.0 30 36.38929573841253 38.0 35.0 40.0 31.0 41.0 31 36.280622846025075 38.0 35.0 40.0 31.0 41.0 32 36.10023654642224 38.0 35.0 40.0 30.0 41.0 33 36.030599173516805 38.0 35.0 40.0 30.0 41.0 34 35.91799485815255 38.0 35.0 40.0 30.0 41.0 35 35.756981603334516 38.0 35.0 40.0 29.0 41.0 36 35.58424733036638 38.0 35.0 40.0 29.0 41.0 37 35.5276896882554 38.0 35.0 40.0 28.0 41.0 38 35.44241506036043 38.0 34.0 40.0 28.0 41.0 39 35.35648206874497 38.0 34.0 40.0 28.0 41.0 40 35.22293785653924 37.0 34.0 40.0 27.0 41.0 41 35.22116822488347 37.0 34.0 40.0 27.0 41.0 42 35.04501796430722 37.0 34.0 40.0 27.0 41.0 43 35.05682831267721 37.0 34.0 40.0 27.0 41.0 44 34.8154339394091 37.0 34.0 40.0 26.0 41.0 45 34.709274799408995 36.0 34.0 40.0 26.0 41.0 46 34.69616916285078 36.0 34.0 40.0 26.0 41.0 47 34.57833545641489 36.0 34.0 40.0 26.0 41.0 48 34.550853014269606 36.0 34.0 40.0 26.0 41.0 49 34.52624343199558 36.0 34.0 40.0 26.0 41.0 50 33.9908909974791 35.0 33.0 39.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 0.0 12 6.0 13 7.0 14 10.0 15 32.0 16 71.0 17 179.0 18 355.0 19 827.0 20 1442.0 21 2389.0 22 3543.0 23 5162.0 24 7478.0 25 10533.0 26 14296.0 27 18038.0 28 20279.0 29 22934.0 30 26970.0 31 33113.0 32 41567.0 33 54181.0 34 90799.0 35 143544.0 36 86854.0 37 108605.0 38 158669.0 39 267557.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.838108629120576 23.851258037486534 28.270602675261426 14.04003065813146 2 31.923762017147826 25.40176266389862 28.97899131888923 13.695484000064317 3 29.61546913551573 25.104203701486995 31.108534430546648 14.17179273245063 4 25.84073136437618 28.800420209354304 30.269812996117707 15.089035430151807 5 23.13000584219638 32.52236382054631 29.29700690165279 15.050623435604523 6 20.324054305627268 41.21213961956046 26.957448443063598 11.506357631748674 7 85.75397385483124 4.601667616544671 7.391182392656341 2.253176135967741 8 85.64123911734598 3.7668767117903386 6.945960576787363 3.645923594076334 9 79.01061421672584 5.977799653756068 10.344886112902678 4.666700016615421 10 45.61352888313999 25.350665778128743 15.434207399758094 13.601597938973168 11 37.00013042212102 23.511356550853012 24.239308512633972 15.249204514391993 12 33.36662372860765 20.865931419403598 27.541221429962427 18.22622342202633 13 23.07462110587239 30.759789252145264 28.720648323003783 17.444941318978564 14 18.540844456434545 34.119230831074766 29.340153397853573 17.999771314637115 15 17.679790467036256 22.342023972657806 41.8761311439092 18.10205441639674 16 19.902772988685435 19.909651415615993 39.46180329128262 20.72577230441595 17 19.616558964198237 21.08425447678397 29.50443167220812 29.794754886809677 18 23.239167370886566 22.263145388506057 32.60526226459254 21.892424976014834 19 27.702105155961632 25.605167574559466 25.754170381314978 20.938556888163927 20 29.206336728477222 23.694304841161937 24.80869933413254 22.2906590962283 21 23.708776336782076 27.91703366498666 27.15308162459511 21.221108373636152 22 24.135596127356308 23.915575795798265 26.11015130752643 25.838676769319 23 21.527779018475275 28.798186953857368 25.079637891020706 24.59439613664665 24 21.957100055206073 23.877074471031104 33.54188962000711 20.62393585375571 25 20.996621531084237 24.6511208262688 31.330698687381748 23.021558955265213 26 19.3996651903359 28.407545902333485 28.260240369755646 23.93254853757497 27 21.46712379917852 27.023820796432506 27.840477666551728 23.668577737837243 28 19.554206470723805 26.81434143082 33.20761593722587 20.423836161230327 29 20.930606498594837 23.850811386387146 32.3409341439753 22.877647971042716 30 21.609337509223344 26.165000062531153 30.731560902664008 21.494101525581495 31 27.28725561485097 24.524271914042888 25.6694853328712 22.51898713823494 32 28.015654227731318 25.30984186764477 26.286489161564425 20.388014743059486 33 26.085764157499895 24.66469901969017 26.092285263550945 23.157251559258988 34 21.454617568395683 26.469526782093222 29.132460636638612 22.943395012872482 35 22.131829965286276 25.007012422260377 29.43913128147774 23.422026330975612 36 27.727117617527302 25.755956985712526 25.561127776159907 20.955797620600265 37 24.14345718670552 27.50289876563502 26.360543913842786 21.99310013381667 38 23.9810548469684 29.688541255375444 23.820349781408954 22.510054116247204 39 23.28678037808122 27.122620019616917 24.6993591450026 24.89124045729926 40 25.002009929947246 24.62065922129061 25.902547876531344 24.47478297223081 41 20.47198514974425 23.14036814770216 27.69040289715769 28.6972438053959 42 23.88055834960632 25.317434936334354 25.46849233814704 25.333514375912287 43 22.984308253576337 24.555269500340348 26.914748597962202 25.54567364812112 44 22.75124570991619 27.1657665158177 27.3013697895916 22.781617984674508 45 21.06692441412775 28.55485143491132 26.389218914423434 23.98900523653749 46 24.31541785996952 27.659941292179496 26.153833785046476 21.870807062804502 47 23.00405023216924 25.260442256052567 27.72524168290988 24.01026582886831 48 23.95738233870089 23.040050310779836 28.225669574663094 24.776897775856185 49 23.34806090891712 22.44305645133915 29.276460951080985 24.932421688662746 50 21.167510241709707 26.556802406913445 28.323396835208968 23.952290516167878 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1302.0 1 1391.5 2 1481.0 3 6185.5 4 10890.0 5 7488.0 6 4086.0 7 4294.0 8 4502.0 9 4752.5 10 5003.0 11 5063.0 12 5123.0 13 4836.5 14 4550.0 15 4479.0 16 4408.0 17 4206.0 18 4004.0 19 4041.5 20 4079.0 21 4294.5 22 4510.0 23 4783.0 24 5056.0 25 5674.0 26 6292.0 27 6956.5 28 7621.0 29 8799.5 30 9978.0 31 11746.5 32 13515.0 33 14747.5 34 15980.0 35 20184.5 36 24389.0 37 27835.5 38 31282.0 39 35054.0 40 38826.0 41 52388.5 42 65951.0 43 76236.5 44 86522.0 45 93166.0 46 99810.0 47 102558.5 48 105307.0 49 103609.0 50 101911.0 51 92999.0 52 84087.0 53 76435.0 54 68783.0 55 62733.5 56 56684.0 57 53461.0 58 50238.0 59 48465.5 60 46693.0 61 43192.5 62 39692.0 63 36228.5 64 32765.0 65 27919.5 66 23074.0 67 19748.5 68 16423.0 69 14481.5 70 12540.0 71 10717.0 72 8894.0 73 7137.0 74 5380.0 75 4653.5 76 3927.0 77 3033.0 78 2139.0 79 1580.0 80 1021.0 81 693.5 82 366.0 83 287.0 84 208.0 85 153.5 86 99.0 87 63.0 88 27.0 89 15.5 90 4.0 91 4.5 92 5.0 93 7.0 94 9.0 95 6.5 96 4.0 97 3.0 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1119442.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.16506865169289 #Duplication Level Percentage of deduplicated Percentage of total 1 77.96068592932231 19.618860135444635 2 6.678528695505093 3.361312662293732 3 2.412237933552796 1.8211239960622172 4 1.4556868102819798 1.4652983406443947 5 1.0227197894863478 1.2868406856934422 6 0.7953087798488505 1.2008400026514259 7 0.6437458985986698 1.1339936812736877 8 0.5203904163169233 1.0476528441838735 9 0.4403674558324534 0.9973689532195523 >10 6.582733356745648 40.92929940484357 >50 1.411271440937338 23.097596417916467 >100 0.07382693069780451 2.867296926136348 >500 0.0017832591955990896 0.3413256396561904 >1k 3.566518391198179E-4 0.2121729719030329 >5k 3.566518391198179E-4 0.6190173380775034 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6897 0.61611052649445 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 2364 0.2111766397901812 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.06235249347442744 0.0 2 0.0 0.0 0.0 0.2511965782952578 0.0 3 0.0 0.0 0.0 0.40698848176144903 0.0 4 0.0 0.0 0.0 0.6362098259668656 0.0 5 0.0 0.0 0.0 1.0786624050196436 0.0 6 0.0 0.0 0.0 1.9109520636174093 0.0 7 0.0 0.0 0.0 2.403340235581656 0.0 8 0.0 0.0 0.0 3.93124431636476 0.0 9 0.0 0.0 0.0 4.825261156897811 0.0 10 0.0 0.0 0.0 6.070345761549057 0.0 11 0.0 0.0 0.0 6.705036973778007 0.0 12 0.0 0.0 0.0 7.317574291477361 0.0 13 0.0 0.0 0.0 7.636751167099323 0.0 14 0.0 0.0 0.0 7.763868069984867 0.0 15 0.0 0.0 0.0 7.889109038252987 0.0 16 0.0 0.0 0.0 8.144325476442727 0.0 17 0.0 0.0 0.0 8.414549391571873 0.0 18 0.0 0.0 0.0 8.882997064608976 0.0 19 0.0 0.0 0.0 9.044595432367197 0.0 20 0.0 0.0 0.0 9.253985467759831 0.0 21 0.0 0.0 0.0 9.462660861393445 0.0 22 0.0 0.0 0.0 9.664189837436865 0.0 23 0.0 0.0 0.0 9.890641944826083 0.0 24 0.0 0.0 0.0 10.07064233787905 0.0 25 0.0 0.0 0.0 10.21723322869787 0.0 26 0.0 0.0 0.0 10.359714929402328 0.0 27 0.0 0.0 0.0 10.526762440573071 0.0 28 0.0 0.0 0.0 10.664598969843905 0.0 29 0.0 0.0 0.0 10.817353645834263 0.0 30 0.0 0.0 0.0 11.043180441684338 0.0 31 0.0 0.0 0.0 11.214873124288708 0.0 32 0.0 0.0 0.0 11.379151398643252 0.0 33 0.0 0.0 0.0 11.54610957959412 0.0 34 0.0 0.0 0.0 11.721732791873094 0.0 35 0.0 0.0 0.0 11.916829992085342 0.0 36 0.0 0.0 0.0 12.085038796114492 0.0 37 0.0 0.0 0.0 12.256374157839351 0.0 38 0.0 0.0 0.0 12.44182369430484 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATCACG 20 7.856394E-4 44.0 1 TCGTTAG 25 4.4427663E-5 44.0 1 CTATCGG 20 7.856394E-4 44.0 3 CGGCCTA 25 4.4427663E-5 44.0 44 TAACGTA 25 4.4427663E-5 44.0 23 TATAGCG 25 4.4427663E-5 44.0 1 GCGTAAG 75 0.0 44.0 1 CGTTTTT 3935 0.0 41.3723 1 ATTAGCG 115 0.0 40.17391 1 TAGCCGT 100 0.0 39.6 44 CGAATAT 145 0.0 39.448277 14 CGCATCG 125 0.0 38.72 21 CGCCAGT 125 0.0 38.72 26 ATGGTCG 120 0.0 38.500004 44 GTTACGG 115 0.0 38.260868 2 TACGAAT 150 0.0 38.13333 12 GCTACGA 150 0.0 38.13333 10 AGGGCGA 1240 0.0 37.79032 6 CGGTTAT 35 7.2900366E-6 37.714287 5 TACACGC 340 0.0 37.52941 35 >>END_MODULE