##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546494_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2050068 Sequences flagged as poor quality 0 Sequence length 50 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.36855314067631 31.0 31.0 33.0 30.0 34.0 2 31.765237055551328 31.0 31.0 34.0 30.0 34.0 3 31.891087515145838 31.0 31.0 34.0 30.0 34.0 4 35.58729612871378 37.0 35.0 37.0 33.0 37.0 5 35.48417223233571 37.0 35.0 37.0 33.0 37.0 6 35.51276543021987 37.0 35.0 37.0 33.0 37.0 7 35.96888103223893 37.0 35.0 37.0 35.0 37.0 8 35.9579613944513 37.0 35.0 37.0 35.0 37.0 9 37.65102084418663 39.0 37.0 39.0 35.0 39.0 10 37.04123668092961 39.0 37.0 39.0 33.0 39.0 11 36.80231631341009 39.0 37.0 39.0 32.0 39.0 12 36.388210537406565 39.0 35.0 39.0 32.0 39.0 13 36.249610744619204 39.0 35.0 39.0 32.0 39.0 14 37.27372604225811 39.0 35.0 41.0 32.0 41.0 15 37.42574051202204 39.0 35.0 41.0 32.0 41.0 16 37.470903404179765 39.0 35.0 41.0 32.0 41.0 17 37.38733349332803 39.0 35.0 41.0 32.0 41.0 18 37.3088560964807 39.0 35.0 41.0 32.0 41.0 19 37.25377402115442 39.0 35.0 41.0 32.0 41.0 20 37.07715744063124 39.0 35.0 41.0 32.0 41.0 21 36.96198906572855 39.0 35.0 41.0 31.0 41.0 22 36.896979027037155 38.0 35.0 41.0 31.0 41.0 23 36.805189388839786 38.0 35.0 41.0 31.0 41.0 24 36.72376379710332 38.0 35.0 41.0 31.0 41.0 25 36.541202535720764 38.0 35.0 41.0 31.0 41.0 26 36.4386825217505 38.0 35.0 40.0 31.0 41.0 27 36.35486481424031 38.0 35.0 40.0 30.0 41.0 28 36.38474674986391 38.0 35.0 40.0 31.0 41.0 29 36.251712626117765 38.0 35.0 40.0 30.0 41.0 30 36.1947715880644 38.0 35.0 40.0 30.0 41.0 31 36.047917434933865 38.0 35.0 40.0 30.0 41.0 32 35.80156560660427 38.0 35.0 40.0 29.0 41.0 33 35.66308580983655 38.0 35.0 40.0 28.0 41.0 34 35.44587594167608 38.0 34.0 40.0 27.0 41.0 35 35.22147021464654 38.0 34.0 40.0 26.0 41.0 36 35.03979819205997 38.0 34.0 40.0 25.0 41.0 37 35.02589816532915 38.0 34.0 40.0 25.0 41.0 38 34.958795025335746 37.0 34.0 40.0 25.0 41.0 39 34.84241205657568 37.0 34.0 40.0 24.0 41.0 40 34.70415908155242 37.0 34.0 40.0 24.0 41.0 41 34.65884936499668 37.0 34.0 40.0 24.0 41.0 42 34.47858363722569 37.0 33.0 40.0 23.0 41.0 43 34.467064994917244 37.0 33.0 40.0 23.0 41.0 44 34.195052066565594 36.0 33.0 40.0 23.0 41.0 45 34.083901607166204 36.0 33.0 40.0 23.0 41.0 46 34.067392886479865 36.0 33.0 40.0 23.0 41.0 47 33.95579805157683 35.0 33.0 40.0 23.0 41.0 48 33.88150588175612 35.0 33.0 40.0 23.0 41.0 49 33.8505049588599 35.0 33.0 40.0 23.0 41.0 50 33.34889086605908 35.0 32.0 39.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 3.0 11 4.0 12 2.0 13 11.0 14 26.0 15 74.0 16 182.0 17 409.0 18 941.0 19 1958.0 20 3277.0 21 5179.0 22 7950.0 23 11477.0 24 16613.0 25 23822.0 26 33372.0 27 40816.0 28 44898.0 29 47844.0 30 53914.0 31 63793.0 32 77191.0 33 99070.0 34 157901.0 35 222000.0 36 166772.0 37 212222.0 38 299419.0 39 458928.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.16252534062284 23.208547228677293 26.157278685389944 16.47164874530991 2 34.738506234915135 24.38553257745597 27.67527711275919 13.200684074869711 3 29.689844434428515 24.751130206412668 31.619195070602537 13.939830288556282 4 25.71290318174812 27.020128112823578 32.31556221549724 14.951406489931065 5 22.626566533402794 31.904746574259974 30.427527282021867 15.041159610315367 6 20.295082894811294 40.273298251570196 28.394033758880195 11.03758509473832 7 84.39076167229574 4.117229282150641 9.206182429070646 2.2858266164829657 8 84.01628628904017 3.5917832969442967 9.069504035963686 3.32242637805185 9 78.36988821834203 5.09236766780419 12.111793364903017 4.425950748950767 10 43.2036888532478 22.445499368801425 18.14076411123924 16.210047666711542 11 34.7863583061635 23.93398657995735 24.56377056761044 16.715884546268708 12 31.29593750060974 19.70178550174921 28.990550557347365 20.011726440293685 13 24.748886378403057 24.609915378416716 30.91492574880443 19.726272494375795 14 20.987547730124074 27.66225315452951 31.658657176249765 19.691541939096656 15 19.81270865161546 21.42480151877889 38.700813826663314 20.06167600294234 16 22.692418007597798 19.338236585323024 36.52561768682795 21.44372772025123 17 22.26965154326588 19.963484138087125 31.251109719287363 26.51575459935963 18 24.399288218732256 21.132420973353078 32.23327226218838 22.235018545726287 19 28.250770218353733 24.702839125336332 26.664432594431016 20.381958061878926 20 28.86577420846528 23.92242598782089 25.926749746837668 21.285050056876162 21 25.941968754207178 25.87319054782573 27.956340960397412 20.22849973756968 22 24.534991034443735 22.58998238107224 27.64747315698796 25.227553427496062 23 23.4047846217784 25.946651525705487 26.237763820517173 24.41080003199894 24 23.590680894487402 23.63028933674395 31.040872790561092 21.738156978207552 25 24.462115403001267 23.238253560369703 28.82475117898528 23.474879857643746 26 21.03081458761368 25.886897410232244 28.254428633586787 24.82785936856729 27 22.864461081290962 23.465172862558706 28.864554736720926 24.805811319429406 28 22.729977737323832 24.87483342015972 30.72376135815983 21.671427484356617 29 23.88901246202565 24.0196910541504 30.082270441760954 22.009026042062995 30 25.43808302944097 23.39522396330268 29.379757159274718 21.786935847981628 31 28.532516970168793 23.130110806080577 25.678172626468974 22.659199597281653 32 29.66964998234205 23.284105697957337 25.771974393044523 21.274269926656093 33 29.012793721964346 23.26605751614093 24.80288458724296 22.918264174651767 34 25.370963304631843 25.102142953306917 27.95370690142961 21.573186840631628 35 25.28408813756422 24.792641024590402 27.93995126015332 21.983319577692058 36 28.311841363310876 25.684855331628025 24.796494555302555 21.206808749758544 37 25.997820560098496 27.9700966016737 25.01292640049013 21.019156437737674 38 26.53336377134807 27.961462741723693 23.728968990296906 21.776204496631333 39 24.783177923854232 26.682919786075388 24.062518901812037 24.471383388258342 40 25.528519054002114 24.502455528304427 27.115295687752795 22.853729729940667 41 22.60725010097226 24.0354954079572 27.258071439581517 26.09918305148902 42 24.74449628012339 26.013966365993713 24.729667503712072 24.51186985017082 43 23.700433351479074 24.557819545498003 26.750137068624063 24.99161003439886 44 24.279243420218254 24.6833275774267 27.92200063607646 23.115428366278582 45 22.454718575188725 26.406197257847058 27.247583982580093 23.891500184384128 46 24.72293601968325 25.51451951837695 26.904375854849693 22.858168607090107 47 23.457026791306433 25.373743700208966 27.267778434666557 23.901451073818038 48 23.96140030477038 24.505626154839742 27.823028309304863 23.709945231085015 49 24.62098818185543 23.174792250793633 27.927073638532967 24.27714592881797 50 22.96328707145324 24.28826751112646 27.988339898969205 24.760105518451095 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1878.0 1 2339.5 2 2801.0 3 17595.5 4 32390.0 5 22095.0 6 11800.0 7 11958.5 8 12117.0 9 12543.0 10 12969.0 11 12851.0 12 12733.0 13 12176.5 14 11620.0 15 11164.0 16 10708.0 17 10244.0 18 9780.0 19 9201.5 20 8623.0 21 8460.5 22 8298.0 23 8416.5 24 8535.0 25 9336.5 26 10138.0 27 11201.0 28 12264.0 29 14433.5 30 16603.0 31 19062.0 32 21521.0 33 24788.5 34 28056.0 35 32737.0 36 37418.0 37 41280.5 38 45143.0 39 52678.0 40 60213.0 41 74039.0 42 87865.0 43 100754.5 44 113644.0 45 123943.5 46 134243.0 47 147603.0 48 160963.0 49 164500.5 50 168038.0 51 156338.0 52 144638.0 53 134335.5 54 124033.0 55 120909.0 56 117785.0 57 118143.5 58 118502.0 59 116445.5 60 114389.0 61 106746.5 62 99104.0 63 92419.0 64 85734.0 65 73561.0 66 61388.0 67 52951.0 68 44514.0 69 40375.0 70 36236.0 71 31266.0 72 26296.0 73 21487.0 74 16678.0 75 13426.0 76 10174.0 77 7438.0 78 4702.0 79 3775.0 80 2848.0 81 2172.5 82 1497.0 83 1122.0 84 747.0 85 502.5 86 258.0 87 190.5 88 123.0 89 79.5 90 36.0 91 26.0 92 16.0 93 11.0 94 6.0 95 4.5 96 3.0 97 1.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2050068.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.182288453473916 #Duplication Level Percentage of deduplicated Percentage of total 1 76.97253409194661 20.153170905902016 2 6.5339821533984415 3.4214921098025735 3 2.6169016344604707 2.0554942034343426 4 1.5608702189316683 1.6346861724202373 5 1.1115162984249105 1.4551020173049303 6 0.8346497692366686 1.311182460946794 7 0.6950736356655127 1.2739032897779503 8 0.587420955891043 1.2304019928603736 9 0.4881684238283275 1.1503229837895883 >10 7.742067298804625 48.787659511149215 >50 0.79874029666021 12.99279867955924 >100 0.05264243504885231 2.367918097038411 >500 0.004683437674763897 0.8798944322784851 >1k 5.620125209716677E-4 0.28119932996558084 >5k 0.0 0.0 >10k+ 1.873375069905559E-4 1.004773813770264 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 20485 0.9992351473219425 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 2174 0.10604526288884077 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCC 2156 0.10516724323290741 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.04677893611333868 0.0 2 0.0 0.0 0.0 0.1688236682880763 0.0 3 0.0 0.0 0.0 0.30979460193515534 0.0 4 0.0 0.0 0.0 0.4470583414794046 0.0 5 0.0 0.0 0.0 0.702220609267595 0.0 6 0.0 0.0 0.0 1.3826858426159523 0.0 7 0.0 0.0 0.0 1.811256992450982 0.0 8 0.0 0.0 0.0 3.072581007069034 0.0 9 0.0 0.0 0.0 3.9090410659548853 0.0 10 0.0 0.0 0.0 5.034515928252136 0.0 11 0.0 0.0 0.0 5.5948875842167185 0.0 12 0.0 0.0 0.0 6.076237471147299 0.0 13 0.0 0.0 0.0 6.374910490773964 0.0 14 0.0 0.0 0.0 6.534612510414289 0.0 15 0.0 0.0 0.0 6.649389190992689 0.0 16 0.0 0.0 0.0 6.816261704489802 0.0 17 0.0 0.0 0.0 6.97708563813493 0.0 18 0.0 0.0 0.0 7.264344402234462 0.0 19 0.0 0.0 0.0 7.381755141780663 0.0 20 0.0 0.0 0.0 7.5342866675641975 0.0 21 0.0 0.0 0.0 7.66823344396381 0.0 22 0.0 0.0 0.0 7.819252824784349 0.0 23 0.0 0.0 0.0 7.984564414448691 0.0 24 0.0 0.0 0.0 8.133681419348042 0.0 25 0.0 0.0 0.0 8.253531102382945 0.0 26 0.0 0.0 0.0 8.366502964779706 0.0 27 0.0 0.0 0.0 8.51088841931097 0.0 28 0.0 0.0 0.0 8.634201402099833 0.0 29 0.0 0.0 0.0 8.775123556877137 0.0 30 0.0 0.0 0.0 8.972482863983048 0.0 31 0.0 0.0 0.0 9.119502377482112 0.0 32 0.0 0.0 0.0 9.276863011373282 0.0 33 0.0 0.0 0.0 9.43446753961332 0.0 34 0.0 0.0 0.0 9.588998999057592 0.0 35 0.0 0.0 0.0 9.759822601006405 0.0 36 0.0 0.0 0.0 9.908500596077788 0.0 37 0.0 0.0 0.0 10.065519777880539 0.0 38 0.0 0.0 0.0 10.273122647639005 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 11380 0.0 41.931458 1 TCGTAAG 95 0.0 39.36842 1 GCGTAAG 130 0.0 38.92308 1 AGGGTAC 1215 0.0 38.748974 6 TCGTTTA 235 0.0 38.38298 38 TACGGGT 115 0.0 38.26087 4 CATATGC 2035 0.0 37.405407 33 CGGTCTA 190 0.0 37.05263 31 GGTACCT 2230 0.0 36.995518 8 CATACGA 280 0.0 36.928574 18 GTTGATC 2140 0.0 36.803738 16 TCAGACG 1970 0.0 36.629444 22 TATGGGA 1200 0.0 36.483334 4 GCGCGAC 1990 0.0 36.482414 9 ATATGCT 2075 0.0 36.47229 34 TAGCATA 2075 0.0 36.47229 30 ACCCGCT 1860 0.0 36.43011 34 TTTAAGC 1865 0.0 36.332443 44 CAGTAGC 2140 0.0 36.186916 27 GTTTTTT 13860 0.0 36.11111 2 >>END_MODULE