##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546492_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1745979 Sequences flagged as poor quality 0 Sequence length 50 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.35702720364907 31.0 31.0 33.0 30.0 34.0 2 31.755691219653844 31.0 31.0 34.0 30.0 34.0 3 31.859092234213584 31.0 31.0 34.0 30.0 34.0 4 35.57850638524289 37.0 35.0 37.0 33.0 37.0 5 35.477717085944334 37.0 35.0 37.0 33.0 37.0 6 35.50405417247286 37.0 35.0 37.0 33.0 37.0 7 35.95060364414463 37.0 35.0 37.0 35.0 37.0 8 35.92222586869602 37.0 35.0 37.0 35.0 37.0 9 37.60665219913871 39.0 37.0 39.0 35.0 39.0 10 37.02806162044332 39.0 37.0 39.0 33.0 39.0 11 36.816848885353146 39.0 37.0 39.0 32.0 39.0 12 36.5578526431303 39.0 35.0 39.0 32.0 39.0 13 36.49864975466486 39.0 35.0 39.0 32.0 39.0 14 37.59522422663732 40.0 36.0 41.0 32.0 41.0 15 37.69941562871031 40.0 36.0 41.0 32.0 41.0 16 37.717598550727125 40.0 36.0 41.0 32.0 41.0 17 37.635098131191725 40.0 36.0 41.0 32.0 41.0 18 37.504421301745325 39.0 36.0 41.0 32.0 41.0 19 37.393651928230526 39.0 36.0 41.0 32.0 41.0 20 37.152745250658796 39.0 35.0 41.0 32.0 41.0 21 37.045631705765075 39.0 35.0 41.0 32.0 41.0 22 36.99067113636533 39.0 35.0 41.0 32.0 41.0 23 36.865166190429555 38.0 35.0 41.0 31.0 41.0 24 36.768522989108114 38.0 35.0 41.0 31.0 41.0 25 36.5862854020581 38.0 35.0 41.0 31.0 41.0 26 36.47518269120075 38.0 35.0 40.0 31.0 41.0 27 36.388618648907006 38.0 35.0 40.0 30.0 41.0 28 36.4042408299298 38.0 35.0 40.0 31.0 41.0 29 36.2804014252176 38.0 35.0 40.0 30.0 41.0 30 36.20345490982423 38.0 35.0 40.0 30.0 41.0 31 36.03488873577517 38.0 35.0 40.0 30.0 41.0 32 35.70835216231123 38.0 35.0 40.0 28.0 41.0 33 35.480756641402905 38.0 35.0 40.0 26.0 41.0 34 35.22191446747068 38.0 34.0 40.0 25.0 41.0 35 34.93685720160437 38.0 34.0 40.0 23.0 41.0 36 34.76250057990388 38.0 34.0 40.0 23.0 41.0 37 34.689579313382346 38.0 34.0 40.0 23.0 41.0 38 34.603223750113834 38.0 34.0 40.0 23.0 41.0 39 34.45607364120645 38.0 34.0 40.0 22.0 41.0 40 34.33066434361467 37.0 33.0 40.0 21.0 41.0 41 34.27180223817125 37.0 33.0 40.0 21.0 41.0 42 34.07663837881211 37.0 33.0 40.0 21.0 41.0 43 34.09210362782141 37.0 33.0 40.0 21.0 41.0 44 33.8363388104897 37.0 33.0 40.0 20.0 41.0 45 33.74224947722739 36.0 33.0 40.0 20.0 41.0 46 33.7413416770763 36.0 33.0 40.0 20.0 41.0 47 33.615788047851666 36.0 33.0 40.0 20.0 41.0 48 33.55799869299688 36.0 33.0 40.0 20.0 41.0 49 33.52402405756312 36.0 33.0 40.0 20.0 41.0 50 33.00297769904449 35.0 32.0 39.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 4.0 12 6.0 13 11.0 14 20.0 15 64.0 16 143.0 17 370.0 18 868.0 19 1719.0 20 3084.0 21 4903.0 22 7435.0 23 10888.0 24 15623.0 25 23381.0 26 34084.0 27 42134.0 28 44299.0 29 43962.0 30 46400.0 31 53062.0 32 63724.0 33 78748.0 34 119108.0 35 160933.0 36 145501.0 37 180851.0 38 254405.0 39 410248.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.63116051223984 21.864581418218663 25.22796665939281 19.27629141014869 2 37.23481210255106 23.494841575986882 25.80947422620776 13.460872095254295 3 28.315460838876067 24.44233292611194 33.565867630710336 13.676338604301655 4 25.065135376771426 26.61807501693892 33.39547611970132 14.921313486588328 5 22.5541086118447 30.251509325140795 32.34861358584496 14.84576847716954 6 19.938613236470772 39.190333904359676 30.234613360183598 10.636439498985956 7 80.59363829690965 4.0859025223098335 12.833774060283657 2.486685120496867 8 79.541277415135 3.9671152974921235 12.772662214150344 3.71894507322253 9 73.43690846224382 5.81415927682979 15.724015008198839 5.024917252727553 10 38.538951499416655 25.74143217071912 21.395789983728328 14.323826346135892 11 29.348233856191857 24.654305693252898 29.453618857958773 16.543841592596475 12 26.483136395111284 20.51634068909191 33.62549034094911 19.37503257484769 13 23.070208748215183 23.39415307973349 34.80981157276233 18.725826599288993 14 19.788725981240322 26.224141298377585 34.24920918292832 19.73792353745377 15 19.009106065995066 21.834455053583117 39.811074474549805 19.345364405872008 16 21.566811513769636 21.16285476514895 37.05897951808126 20.211354203000152 17 21.250885606298816 21.52431386631798 33.48797436853479 23.736826158848416 18 23.166658934614905 21.41091044050358 34.568457008933095 20.853973615948416 19 25.806495954418697 24.592449279172314 29.817540760799528 19.783514005609458 20 26.376949550939617 23.24019933802182 29.457857167812442 20.924993943226124 21 24.489756176907054 25.121722540763663 30.57682824363867 19.811693038690613 22 23.220955120307863 22.424954710222746 30.42195811060729 23.932132058862106 23 21.69355988817735 25.566745075398963 29.959524140897457 22.780170895526236 24 21.416695160709263 23.149018401710446 33.88551637791749 21.548770059662804 25 22.77094970787163 24.070621697053628 31.26612633943478 21.892302255639958 26 20.73707644822761 24.30481695369761 31.686692680725255 23.27141391734952 27 22.0154423392263 23.317634404537515 30.968413709443244 23.698509546792945 28 21.532103192535534 24.746345746426503 32.70159606730665 21.01995499373131 29 22.432801310897784 23.801088100143243 31.61458413875539 22.151526450203583 30 22.542596445890815 24.210829568969615 31.65003702793676 21.596536957202808 31 24.695600577097434 24.092844186556654 28.223649883532392 22.987905352813524 32 25.334382601394406 25.43404015741312 27.620148925044347 21.61142831614813 33 23.961284757720453 24.876301490453205 27.193053295600922 23.96936045622542 34 22.46447408588534 27.139501677855232 28.338198798496432 22.057825437762997 35 22.490763061869586 26.130497560394485 28.23098101409009 23.14775836364584 36 25.80157035107524 27.532461730639373 25.387361474565274 21.278606443720115 37 23.47296273322875 28.538544850768538 26.057300803732463 21.93119161227025 38 25.026990588088406 27.80789459667041 25.824823780812945 21.340291034428247 39 23.16425340740066 27.738248856372273 25.845958055623807 23.251539680603262 40 25.27395804875087 25.106201162786036 28.42153313413277 21.19830765433032 41 21.81727271633851 25.72728537972106 28.50939215191019 23.946049752030234 42 24.283625404429262 25.996532604344036 26.898662584143334 22.82117940708336 43 23.169465383031525 24.686837585102683 28.62628931963099 23.517407712234796 44 23.251539680603262 25.708442083209476 28.79404620559583 22.24597203059143 45 21.75879549524937 25.77344859245157 28.987290225140168 23.480465687158894 46 23.563628199422787 25.840516982163013 28.059558562846405 22.53629625556779 47 22.774557998692995 25.802257644565024 28.852007956567633 22.571176400174345 48 23.0207808914082 24.748350352438376 28.705098973126255 23.525769783027172 49 23.012705192903237 23.991640220185925 28.971367925960163 24.024286660950676 50 21.54355808403194 24.909177029047886 30.396700074857712 23.15056481206246 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1496.0 1 2074.0 2 2652.0 3 22497.0 4 42342.0 5 29081.5 6 15821.0 7 15930.0 8 16039.0 9 16218.5 10 16398.0 11 16041.0 12 15684.0 13 14934.0 14 14184.0 15 13196.5 16 12209.0 17 11490.0 18 10771.0 19 10245.5 20 9720.0 21 9644.5 22 9569.0 23 9858.5 24 10148.0 25 10782.5 26 11417.0 27 12705.5 28 13994.0 29 16139.0 30 18284.0 31 20655.0 32 23026.0 33 26087.5 34 29149.0 35 34118.5 36 39088.0 37 43694.5 38 48301.0 39 54167.5 40 60034.0 41 68692.5 42 77351.0 43 86059.0 44 94767.0 45 105908.5 46 117050.0 47 128487.0 48 139924.0 49 142016.0 50 144108.0 51 130633.5 52 117159.0 53 108449.5 54 99740.0 55 93733.0 56 87726.0 57 87132.5 58 86539.0 59 83916.5 60 81294.0 61 76076.0 62 70858.0 63 65482.5 64 60107.0 65 52160.0 66 44213.0 67 38876.0 68 33539.0 69 29489.0 70 25439.0 71 21518.0 72 17597.0 73 14992.0 74 12387.0 75 9855.5 76 7324.0 77 5851.0 78 4378.0 79 3322.0 80 2266.0 81 1611.0 82 956.0 83 752.5 84 549.0 85 387.5 86 226.0 87 158.5 88 91.0 89 68.0 90 45.0 91 29.5 92 14.0 93 9.0 94 4.0 95 2.5 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1745979.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.875704433461472 #Duplication Level Percentage of deduplicated Percentage of total 1 73.57825579625516 23.45358734491053 2 6.743184420538867 4.298875070588382 3 3.0555660749577642 2.9219496324679697 4 2.1140726859628076 2.6955022435441784 5 1.6379675658618988 2.610568500050511 6 1.334374636744619 2.5520478914627396 7 1.2022017586660663 2.682471955003897 8 0.9981964747645014 2.5454572636893142 9 0.8909128816893862 2.555862812342487 >10 8.31611411384034 47.658792571381866 >50 0.09879025051507098 2.0019947812161756 >100 0.026748701614160108 1.693043474753473 >500 0.00307244280093619 0.7001867824955594 >1k 3.614638589336694E-4 0.13826298156897668 >5k 0.0 0.0 >10k+ 1.807319294668347E-4 1.4913966945240285 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 25888 1.4827211552945367 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.047136878507702554 0.0 2 0.0 0.0 0.0 0.1705633343814559 0.0 3 0.0 0.0 0.0 0.3419857856251421 0.0 4 0.0 0.0 0.0 0.5321369844654489 0.0 5 0.0 0.0 0.0 0.9075137788026088 0.0 6 0.0 0.0 0.0 1.7317504964263601 0.0 7 0.0 0.0 0.0 2.28885914435397 0.0 8 0.0 0.0 0.0 3.7885908135206665 0.0 9 0.0 0.0 0.0 4.777835243150118 0.0 10 0.0 0.0 0.0 6.016739032943695 0.0 11 0.0 0.0 0.0 6.546985960312237 0.0 12 0.0 0.0 0.0 7.088687779177183 0.0 13 0.0 0.0 0.0 7.433880934421319 0.0 14 0.0 0.0 0.0 7.606105228069754 0.0 15 0.0 0.0 0.0 7.737721931363436 0.0 16 0.0 0.0 0.0 7.931080499822736 0.0 17 0.0 0.0 0.0 8.115905174117215 0.0 18 0.0 0.0 0.0 8.465852109332358 0.0 19 0.0 0.0 0.0 8.601248926819853 0.0 20 0.0 0.0 0.0 8.766886657857855 0.0 21 0.0 0.0 0.0 8.91047372276528 0.0 22 0.0 0.0 0.0 9.061506467145367 0.0 23 5.7274457482020115E-5 0.0 0.0 9.232986192846536 0.0 24 5.7274457482020115E-5 0.0 0.0 9.375084121859427 0.0 25 5.7274457482020115E-5 0.0 0.0 9.50074428157498 0.0 26 5.7274457482020115E-5 0.0 0.0 9.619130585190314 5.7274457482020115E-5 27 5.7274457482020115E-5 0.0 0.0 9.772225210039755 5.7274457482020115E-5 28 5.7274457482020115E-5 0.0 0.0 9.901436386119192 5.7274457482020115E-5 29 5.7274457482020115E-5 0.0 0.0 10.040785141172947 5.7274457482020115E-5 30 5.7274457482020115E-5 0.0 0.0 10.22858808725649 5.7274457482020115E-5 31 5.7274457482020115E-5 0.0 0.0 10.373549739143483 5.7274457482020115E-5 32 5.7274457482020115E-5 0.0 0.0 10.54187936968314 5.7274457482020115E-5 33 5.7274457482020115E-5 0.0 0.0 10.70654343494395 5.7274457482020115E-5 34 5.7274457482020115E-5 0.0 0.0 10.862673606039936 5.7274457482020115E-5 35 5.7274457482020115E-5 0.0 0.0 11.03747525027506 5.7274457482020115E-5 36 5.7274457482020115E-5 0.0 0.0 11.192975402338746 5.7274457482020115E-5 37 5.7274457482020115E-5 0.0 0.0 11.354031176778186 5.7274457482020115E-5 38 5.7274457482020115E-5 0.0 0.0 11.53673669614583 5.7274457482020115E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 15270 0.0 42.53045 1 TAACGCC 130 0.0 38.923077 12 GTTTTTT 17680 0.0 37.828053 2 CGGTCTA 70 0.0 37.714287 31 CATATGC 1210 0.0 37.090908 33 TATAGCG 95 0.0 37.05263 1 GCCAGTA 1195 0.0 37.00418 25 AAGTACG 30 1.3013721E-4 36.666664 1 TACGGGA 420 0.0 36.666664 4 TTGATCC 1250 0.0 36.607998 17 TAGCCGT 175 0.0 36.45714 44 TAGCATA 1240 0.0 36.193546 30 GGGCGAT 3795 0.0 36.057972 7 AGGGTAC 870 0.0 35.908047 6 ATATGCT 1255 0.0 35.760956 34 ACGGGAC 320 0.0 35.75 5 GTTGATC 1290 0.0 35.64341 16 GTCTCAA 1185 0.0 35.459915 42 TAGCGGG 875 0.0 35.45143 3 GTAGCAT 1275 0.0 35.37255 29 >>END_MODULE