##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546491_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1497004 Sequences flagged as poor quality 0 Sequence length 50 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.32527969197143 31.0 31.0 33.0 30.0 34.0 2 31.730838394553388 31.0 31.0 34.0 30.0 34.0 3 31.85737312659151 31.0 31.0 34.0 30.0 34.0 4 35.5643819254992 37.0 35.0 37.0 33.0 37.0 5 35.461012128224105 37.0 35.0 37.0 33.0 37.0 6 35.48452308744666 37.0 35.0 37.0 33.0 37.0 7 35.9434978129651 37.0 35.0 37.0 35.0 37.0 8 35.92460875188042 37.0 35.0 37.0 35.0 37.0 9 37.622085846130005 39.0 37.0 39.0 35.0 39.0 10 36.998327993779576 39.0 37.0 39.0 32.0 39.0 11 36.78679816486796 39.0 37.0 39.0 32.0 39.0 12 36.451758979935924 39.0 35.0 39.0 32.0 39.0 13 36.36302441409642 39.0 35.0 39.0 32.0 39.0 14 37.413883997637946 40.0 36.0 41.0 32.0 41.0 15 37.55751554438064 40.0 36.0 41.0 32.0 41.0 16 37.59701777683961 40.0 36.0 41.0 32.0 41.0 17 37.50609550809484 39.0 35.0 41.0 32.0 41.0 18 37.42256600516765 39.0 36.0 41.0 32.0 41.0 19 37.34181605393172 39.0 36.0 41.0 32.0 41.0 20 37.142837293687926 39.0 35.0 41.0 32.0 41.0 21 37.03459576594318 39.0 35.0 41.0 32.0 41.0 22 36.97858188755675 39.0 35.0 41.0 31.0 41.0 23 36.866809975123644 38.0 35.0 41.0 31.0 41.0 24 36.78088234901176 38.0 35.0 41.0 31.0 41.0 25 36.57538590411248 38.0 35.0 41.0 31.0 41.0 26 36.46351579554898 38.0 35.0 40.0 31.0 41.0 27 36.37247662664896 38.0 35.0 40.0 30.0 41.0 28 36.403360311662496 38.0 35.0 40.0 30.0 41.0 29 36.27666392340969 38.0 35.0 40.0 30.0 41.0 30 36.22900740412183 38.0 35.0 40.0 30.0 41.0 31 36.105174067671165 38.0 35.0 40.0 30.0 41.0 32 35.8489349393856 38.0 35.0 40.0 29.0 41.0 33 35.70819583648407 38.0 35.0 40.0 28.0 41.0 34 35.53346751244486 38.0 35.0 40.0 27.0 41.0 35 35.29387763826951 38.0 34.0 40.0 26.0 41.0 36 35.11621879433856 38.0 34.0 40.0 25.0 41.0 37 35.06452821769347 38.0 34.0 40.0 25.0 41.0 38 34.971466342107306 38.0 34.0 40.0 25.0 41.0 39 34.840920932742996 38.0 34.0 40.0 24.0 41.0 40 34.707191163149865 37.0 34.0 40.0 24.0 41.0 41 34.65381655626839 37.0 34.0 40.0 23.0 41.0 42 34.44849579560242 37.0 33.0 40.0 23.0 41.0 43 34.45162404375673 37.0 33.0 40.0 23.0 41.0 44 34.1819039895685 36.0 33.0 40.0 23.0 41.0 45 34.07934113736503 36.0 33.0 40.0 23.0 41.0 46 34.065544915043645 36.0 33.0 40.0 23.0 41.0 47 33.944757662638175 36.0 33.0 40.0 23.0 41.0 48 33.85608121287585 36.0 33.0 40.0 23.0 41.0 49 33.81978204467055 35.0 33.0 40.0 23.0 41.0 50 33.30212744922525 35.0 32.0 39.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 0.0 12 5.0 13 8.0 14 19.0 15 54.0 16 133.0 17 328.0 18 698.0 19 1445.0 20 2556.0 21 3847.0 22 5881.0 23 8519.0 24 12132.0 25 17765.0 26 24824.0 27 30724.0 28 33656.0 29 35463.0 30 39452.0 31 46251.0 32 55658.0 33 70703.0 34 108064.0 35 148853.0 36 125272.0 37 160126.0 38 221395.0 39 343171.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.785881667650855 22.188451066263013 26.007946538553 18.017720727533128 2 35.547734007390765 23.99679626774544 27.26111620276232 13.194353522101476 3 29.508070786718005 24.72525123513364 32.286553676543285 13.480124301605073 4 25.88503437532565 26.75089712519138 31.935920010901775 15.428148488581192 5 22.298270412103108 31.01280958501113 31.330911607450613 15.35800839543515 6 19.708163772441488 39.36896628198722 29.624503341340436 11.29836660423085 7 83.2037188945387 4.126709080269659 10.26630523365335 2.4032667915382993 8 82.83371320317113 3.5651207344803355 9.935444394270156 3.6657216680783753 9 76.91081653756436 5.223499736807651 13.308514873707752 4.557168851920236 10 40.00209752278551 23.404813881592833 19.82533112803974 16.767757467581916 11 32.23558520885716 24.274551036603775 26.579020496939222 16.910843257599847 12 28.599990380787226 20.378035062030563 30.6423362930226 20.379638264159613 13 23.90461214532493 24.10461161092422 32.011136910789816 19.979639332961035 14 20.434948737611926 27.408811198901272 32.15288669903353 20.003353364453268 15 19.249380763177655 21.944363542114782 38.34264971903883 20.463605975668735 16 22.015505636591485 20.24590448656116 36.1824684503181 21.556121426529256 17 21.65718996074827 21.00435269378038 31.871123924852572 25.467333420618782 18 23.897865336365168 21.788318534887015 32.37653339603635 21.93728273271147 19 27.104603594913574 25.081830108670385 27.123307619752516 20.69025867666352 20 27.364856740529753 24.189314123409154 26.649494590528818 21.796334545532275 21 24.59372186046263 25.90307039927749 28.707805723966 20.795402016293878 22 24.089581590964354 22.098137346326396 28.479015420132477 25.333265642576773 23 22.388116531418753 25.801333864171372 27.343213511787546 24.46733609262233 24 22.662731696107695 23.84936847196133 31.77366259542393 21.71423723650705 25 24.23260058089357 23.817905630178675 28.86812593687124 23.08136785205651 26 21.406489227817694 25.292985189084334 28.818226270604484 24.482299312493485 27 22.777694648778493 23.255315283058696 29.063382596172087 24.903607471990725 28 22.62138244119588 24.534069381244137 30.799450101669734 22.045098075890245 29 22.84322553580351 23.433738320004487 30.16110845395203 23.561927690239973 30 23.63173378294246 22.965269297877626 30.340132691696216 23.062864227483697 31 25.74007818282383 23.16273036010592 26.387905443138425 24.709286013931827 32 26.086570242965283 23.051575012491615 26.29031051353236 24.57154423101074 33 24.723447632738456 23.09305786758085 26.14441911978859 26.039075379892108 34 22.135478595915576 24.625785903043678 28.357372458590625 24.88136304245012 35 23.08677865924206 23.142690333492762 29.649820574961723 24.120710432303454 36 25.35738047460127 24.016635894092467 27.317161477190442 23.30882215411582 37 23.7227823038549 25.73774017971896 27.906271459528497 22.63320605689764 38 24.50721574558251 25.66158807858897 27.465791674571342 22.365404501257178 39 23.36299702606005 25.431528573069944 26.472273955179816 24.733200445690194 40 24.354377142612847 23.594258933175862 29.540402029653894 22.510961894557397 41 22.20688789074712 23.810958420952783 28.97286847596934 25.009285212330763 42 24.462793686590015 25.6617884788551 26.056176202602 23.819241631952888 43 23.065603031120826 24.333869515378716 28.477479018092133 24.12304843540832 44 23.763196357524762 25.199531864978315 27.752030054695915 23.285241722801008 45 21.948304747348704 25.555509537716663 28.476009416140503 24.020176298794123 46 24.530996577163457 24.75110286946461 27.737801635800572 22.98009891757136 47 23.559389286868974 25.310286412060357 27.52050094722526 23.609823353845414 48 23.470545168883987 24.32124429861243 27.999056782747406 24.20915374975618 49 24.125720438956744 23.06333182810467 27.79144210703512 25.01950562590347 50 22.369278906402386 23.861325687840512 29.36952740273239 24.399868003024707 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1463.0 1 1729.5 2 1996.0 3 14608.5 4 27221.0 5 18480.0 6 9739.0 7 9798.5 8 9858.0 9 9974.5 10 10091.0 11 9936.0 12 9781.0 13 9537.5 14 9294.0 15 8732.0 16 8170.0 17 7722.5 18 7275.0 19 6981.0 20 6687.0 21 6604.5 22 6522.0 23 7017.0 24 7512.0 25 7702.0 26 7892.0 27 8957.0 28 10022.0 29 11546.5 30 13071.0 31 14685.5 32 16300.0 33 19061.0 34 21822.0 35 25160.0 36 28498.0 37 31927.5 38 35357.0 39 40544.0 40 45731.0 41 55475.0 42 65219.0 43 73169.0 44 81119.0 45 90912.0 46 100705.0 47 112144.0 48 123583.0 49 126109.5 50 128636.0 51 117236.5 52 105837.0 53 98238.0 54 90639.0 55 86228.5 56 81818.0 57 81829.5 58 81841.0 59 77830.5 60 73820.0 61 70276.0 62 66732.0 63 62006.0 64 57280.0 65 49187.0 66 41094.0 67 36329.5 68 31565.0 69 29083.0 70 26601.0 71 22598.5 72 18596.0 73 15287.0 74 11978.0 75 9707.5 76 7437.0 77 5843.0 78 4249.0 79 3161.5 80 2074.0 81 1515.5 82 957.0 83 727.5 84 498.0 85 381.0 86 264.0 87 185.5 88 107.0 89 70.0 90 33.0 91 22.5 92 12.0 93 10.0 94 8.0 95 4.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1497004.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.14794058522495 #Duplication Level Percentage of deduplicated Percentage of total 1 75.081660083474 21.88475767153156 2 6.651158565649785 3.8773514938893987 3 2.8000881088603062 2.448504054913653 4 1.8084887753412877 2.1085489349077635 5 1.3092601541995659 1.9081118592605701 6 1.0914247891276025 1.9087670944039816 7 0.9105283677093213 1.8578018734207211 8 0.7678574025984227 1.7905169559091185 9 0.7022714668473474 1.842279029132873 >10 8.630423966716615 52.736638372987386 >50 0.21251451307650213 3.828161959815795 >100 0.029255862612100253 1.6633287660192133 >500 0.004376860543460799 0.8041346408113863 >1k 4.6072216246955766E-4 0.16732661363576942 >5k 0.0 0.0 >10k+ 2.3036108123477883E-4 1.1737706793607086 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 17481 1.1677323507485617 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 6.680008871051781E-5 0.0 0.0 0.0431528573069945 0.0 2 6.680008871051781E-5 0.0 0.0 0.17187662825216232 0.0 3 6.680008871051781E-5 0.0 0.0 0.33560364568164147 0.0 4 6.680008871051781E-5 0.0 0.0 0.5255162978856436 0.0 5 6.680008871051781E-5 0.0 0.0 0.8866375774547028 0.0 6 6.680008871051781E-5 0.0 0.0 1.7944507830306398 0.0 7 6.680008871051781E-5 0.0 0.0 2.360915535295831 0.0 8 6.680008871051781E-5 0.0 0.0 3.9502232458964706 0.0 9 1.3360017742103562E-4 0.0 0.0 4.848484038786803 0.0 10 1.3360017742103562E-4 0.0 0.0 5.948681499849032 0.0 11 1.3360017742103562E-4 0.0 0.0 6.455694173161862 0.0 12 1.3360017742103562E-4 0.0 0.0 6.931845205490433 0.0 13 1.3360017742103562E-4 0.0 0.0 7.234382807260368 0.0 14 2.0040026613155342E-4 0.0 0.0 7.398577425310821 0.0 15 2.0040026613155342E-4 0.0 0.0 7.505056766715386 0.0 16 2.0040026613155342E-4 0.0 0.0 7.671455787693286 0.0 17 2.0040026613155342E-4 0.0 0.0 7.831041199622713 0.0 18 2.0040026613155342E-4 0.0 0.0 8.14146121186049 0.0 19 2.0040026613155342E-4 0.0 0.0 8.256958565240975 0.0 20 2.0040026613155342E-4 0.0 0.0 8.404787161557351 0.0 21 2.0040026613155342E-4 0.0 0.0 8.536450136405781 0.0 22 2.0040026613155342E-4 0.0 0.0 8.67686392287529 0.0 23 2.0040026613155342E-4 0.0 0.0 8.84199374216769 0.0 24 2.0040026613155342E-4 0.0 0.0 8.97626192047583 0.0 25 2.0040026613155342E-4 0.0 0.0 9.092961675453106 0.0 26 2.0040026613155342E-4 0.0 0.0 9.208325428656169 0.0 27 2.0040026613155342E-4 0.0 0.0 9.347136012996625 0.0 28 2.6720035484207124E-4 0.0 0.0 9.469313375248163 0.0 29 2.6720035484207124E-4 0.0 0.0 9.598504746814303 0.0 30 2.6720035484207124E-4 0.0 0.0 9.787415397687647 0.0 31 2.6720035484207124E-4 0.0 0.0 9.918877972269946 0.0 32 2.6720035484207124E-4 0.0 0.0 10.081068587659084 0.0 33 2.6720035484207124E-4 0.0 0.0 10.22629198051575 0.0 34 2.6720035484207124E-4 0.0 0.0 10.365436565299758 0.0 35 2.6720035484207124E-4 0.0 0.0 10.536043991866421 0.0 36 2.6720035484207124E-4 0.0 0.0 10.677326179489166 0.0 37 2.6720035484207124E-4 0.0 0.0 10.833771987249198 0.0 38 2.6720035484207124E-4 0.0 0.0 11.017539031291834 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGATAG 50 2.7284841E-11 44.0 1 CGTTTTT 9365 0.0 42.449543 1 TATAGCG 50 1.3478711E-9 39.600002 1 ATAACGC 190 0.0 38.210526 11 TCGTTAG 75 0.0 38.13333 1 CATATGC 1600 0.0 37.95 33 ATTACCG 35 7.2916846E-6 37.714287 10 GCGATAT 170 0.0 37.52941 9 TATGGGC 645 0.0 37.178295 4 GTATGCG 60 1.9826984E-10 36.666668 1 AGGGTAC 1100 0.0 36.6 6 TAGCATA 1655 0.0 36.555893 30 CGGTCTA 145 0.0 36.41379 31 GTTTTTT 11315 0.0 36.3977 2 TAAGGGC 950 0.0 36.3579 4 TATACTA 735 0.0 36.21769 44 CCAGTAG 1695 0.0 36.21239 26 ATCCTGC 1705 0.0 36.129032 20 CGTTAGG 220 0.0 36.0 2 GTAGCAT 1705 0.0 36.0 29 >>END_MODULE