##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546484_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1101086 Sequences flagged as poor quality 0 Sequence length 50 %GC 47 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.53258146956732 31.0 31.0 33.0 30.0 34.0 2 31.910081501354117 31.0 31.0 34.0 30.0 34.0 3 32.00837445939736 33.0 31.0 34.0 30.0 34.0 4 35.69880463469702 37.0 35.0 37.0 35.0 37.0 5 35.65708582254247 37.0 35.0 37.0 33.0 37.0 6 35.698764674148975 37.0 35.0 37.0 33.0 37.0 7 36.03392287250951 37.0 35.0 37.0 35.0 37.0 8 18.307577246463946 28.0 0.0 37.0 0.0 37.0 9 27.848099058565815 27.0 17.0 39.0 17.0 39.0 10 33.634311942936336 32.0 32.0 39.0 27.0 39.0 11 35.830623584352175 37.0 35.0 39.0 32.0 39.0 12 36.44462739513535 37.0 35.0 39.0 32.0 39.0 13 36.57497507006719 39.0 35.0 39.0 33.0 39.0 14 37.702910581008204 39.0 36.0 41.0 33.0 41.0 15 37.95259589169238 40.0 36.0 41.0 33.0 41.0 16 38.02824393371635 40.0 36.0 41.0 33.0 41.0 17 37.936076746048904 40.0 36.0 41.0 33.0 41.0 18 37.89123737837008 40.0 36.0 41.0 33.0 41.0 19 37.91060643764429 40.0 36.0 41.0 33.0 41.0 20 37.82317729950249 40.0 36.0 41.0 33.0 41.0 21 37.68827230570546 40.0 35.0 41.0 33.0 41.0 22 37.680307441925514 40.0 35.0 41.0 33.0 41.0 23 37.57508314518575 39.0 35.0 41.0 33.0 41.0 24 37.44777519648783 39.0 35.0 41.0 33.0 41.0 25 37.310371760243974 39.0 35.0 41.0 32.0 41.0 26 37.27154191407392 39.0 35.0 41.0 33.0 41.0 27 37.14979483891358 39.0 35.0 41.0 32.0 41.0 28 37.12355892273628 39.0 35.0 41.0 32.0 41.0 29 37.00518942207965 39.0 35.0 41.0 32.0 41.0 30 36.8809711503007 39.0 35.0 40.0 31.0 41.0 31 36.88018556225399 39.0 35.0 41.0 31.0 41.0 32 36.68148173712135 39.0 35.0 41.0 31.0 41.0 33 36.571097988712964 39.0 35.0 41.0 30.0 41.0 34 36.41415021170008 39.0 35.0 41.0 30.0 41.0 35 36.236640916331694 39.0 35.0 41.0 30.0 41.0 36 36.116457751710584 39.0 35.0 41.0 30.0 41.0 37 36.06302323342591 39.0 35.0 41.0 29.0 41.0 38 35.97015582797347 39.0 35.0 41.0 29.0 41.0 39 35.918748399307596 39.0 35.0 40.0 29.0 41.0 40 35.834996539779816 38.0 35.0 40.0 29.0 41.0 41 35.81597441071815 38.0 35.0 40.0 29.0 41.0 42 35.67698254268967 38.0 35.0 40.0 28.0 41.0 43 35.683132834310854 38.0 35.0 40.0 28.0 41.0 44 35.431804600185636 38.0 35.0 40.0 27.0 41.0 45 35.33214390156627 38.0 34.0 40.0 27.0 41.0 46 35.32512991719084 38.0 34.0 40.0 27.0 41.0 47 35.20222398613732 38.0 34.0 40.0 26.0 41.0 48 35.19283779831911 38.0 34.0 40.0 27.0 41.0 49 35.14551906027322 37.0 34.0 40.0 27.0 41.0 50 34.53888797060357 37.0 34.0 40.0 25.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 4.0 12 1.0 13 7.0 14 12.0 15 26.0 16 55.0 17 137.0 18 298.0 19 648.0 20 1220.0 21 2133.0 22 3343.0 23 5059.0 24 7563.0 25 11035.0 26 14420.0 27 17077.0 28 18844.0 29 21005.0 30 25698.0 31 32122.0 32 41603.0 33 55429.0 34 86140.0 35 127455.0 36 116207.0 37 175677.0 38 186386.0 39 151480.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.71708840181421 23.129710122551735 27.29932085232216 14.853880623311893 2 34.35717101116534 23.72848260717147 28.674054524351412 13.240291857311782 3 30.33913790566768 24.733762848678488 31.599166640934495 13.327932604719342 4 26.521634095792702 26.400299340832596 31.707695856636086 15.37037070673862 5 22.96369220932788 30.648468875274048 30.66899406585862 15.718844849539455 6 20.697111760570927 40.00686594870882 28.450729552460025 10.845292738260227 7 85.71728275538877 3.67128453181677 8.466277838424974 2.145154874369486 8 43.74853553673373 50.73245868170152 4.11684464247116 1.4021611390935858 9 81.51488621233945 4.922776240911246 10.080956437553471 3.48138110919583 10 43.624657837807405 29.209162590388033 15.173474188210548 11.992705383594016 11 39.54940849306957 21.784401944988858 23.631669097600007 15.034520464341568 12 35.64780589345428 20.48277791198871 26.69555329919734 17.173862895359672 13 24.991417564113974 28.18807976851944 28.26827332288304 18.552229344483536 14 18.848391497121934 31.248876109586355 31.14561442067195 18.757117972619756 15 18.68900340209575 23.117903596994243 39.99142664605671 18.201666354853298 16 22.764797663397772 20.388234888101383 37.83155902445404 19.015408424046804 17 21.603943742813914 21.159110187578445 30.520504302116276 26.716441767491368 18 24.404088327342276 23.19310208285275 31.701701774429974 20.701107815375003 19 27.39631600074835 26.619719077347277 26.495478100711477 19.488486821192897 20 29.61812247181419 25.492105067179132 25.57084551070489 19.318926950301794 21 25.62097783461056 27.32238898687296 28.047128017248426 19.009505161268056 22 23.595159687799136 22.99747703630779 29.432850839988884 23.974512435904188 23 22.583976183513368 26.760761648045655 28.480790782917953 22.17447138552302 24 23.929102722221515 24.170591579585974 32.16324610430066 19.73705959389185 25 22.711305020679585 24.07813740252805 30.067496998417926 23.143060578374442 26 19.590567857551545 28.761422813476877 28.869952029178464 22.778057299793115 27 20.668685279805572 26.11993976855577 30.361116207090088 22.85025874454856 28 19.89272409239605 26.147548874474836 33.323464288892964 20.636262744236145 29 21.373171577878566 25.16270300412502 32.522073661821146 20.942051756175267 30 23.2147171065657 24.79170564333758 30.772619032482478 21.220958217614246 31 28.31050435660793 23.52032447965009 26.489393199078 21.679777964663977 32 28.898741787653282 24.868448059461297 25.757751892222768 20.475058260662653 33 27.953584007062123 24.592357000270642 26.393033786643365 21.06102520602387 34 21.82163791020865 26.272425587102187 29.52076404567854 22.385172457010626 35 22.401519953936386 26.314747440254436 29.360740214660797 21.922992391148373 36 26.608003371217144 27.468426626076436 25.495283747136916 20.428286255569503 37 24.304731873804588 29.285269270520196 25.84148740425362 20.568511451421596 38 23.607420310493456 30.604330633574488 24.09412162174435 21.694127434187703 39 23.587621675327814 27.82244075394656 25.379943074382926 23.209994496342702 40 23.907578517935928 24.347780282375766 27.13729899390238 24.607342205785923 41 20.236566444401255 25.252795876071442 27.37115901936815 27.13947866015915 42 22.318420177897096 27.39577108418416 24.632135909456665 25.65367282846208 43 21.599039493736182 25.843939528792482 26.35534372428675 26.201677253184585 44 22.280548476685745 26.32764379894032 27.997722248761676 23.394085475612258 45 21.644721665700953 28.848155366610783 25.696539598178525 23.81058336950974 46 23.421694581531323 27.660509714954145 27.236292169730614 21.681503533783918 47 22.142230488808323 26.112492575511816 27.665413964031877 24.07986297164799 48 22.716754186321506 23.976601282733593 29.620120499216227 23.686524031728677 49 23.10128364178638 23.366476369693192 30.023358756718366 23.508881231802057 50 20.918257066205545 25.797076704271966 29.264380802226164 24.020285427296322 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 333.0 1 869.0 2 1405.0 3 8114.5 4 14824.0 5 10188.0 6 5552.0 7 5506.0 8 5460.0 9 5568.5 10 5677.0 11 5584.5 12 5492.0 13 5350.0 14 5208.0 15 4997.5 16 4787.0 17 4591.0 18 4395.0 19 4518.5 20 4642.0 21 4919.5 22 5197.0 23 5593.0 24 5989.0 25 6945.5 26 7902.0 27 9134.0 28 10366.0 29 12127.5 30 13889.0 31 16213.5 32 18538.0 33 21612.0 34 24686.0 35 27345.5 36 30005.0 37 33149.0 38 36293.0 39 43853.5 40 51414.0 41 60592.5 42 69771.0 43 74957.5 44 80144.0 45 82935.0 46 85726.0 47 86452.5 48 87179.0 49 85259.0 50 83339.0 51 77858.0 52 72377.0 53 67833.5 54 63290.0 55 60621.0 56 57952.0 57 56794.0 58 55636.0 59 52891.5 60 50147.0 61 46776.0 62 43405.0 63 37144.0 64 30883.0 65 25895.5 66 20908.0 67 17382.5 68 13857.0 69 11738.5 70 9620.0 71 8147.0 72 6674.0 73 5317.0 74 3960.0 75 3060.0 76 2160.0 77 1628.0 78 1096.0 79 809.0 80 522.0 81 387.0 82 252.0 83 167.0 84 82.0 85 55.0 86 28.0 87 22.5 88 17.0 89 11.0 90 5.0 91 3.0 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1101086.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.63811288145241 #Duplication Level Percentage of deduplicated Percentage of total 1 68.51375115789145 23.046732953808934 2 7.295421881705873 4.908084495492802 3 4.03500053278361 4.071894101954872 4 2.988704247731398 4.021374834178602 5 2.366545364262033 3.9803060051062085 6 2.094436877701322 4.227174246911628 7 1.7611047756284346 4.146816886705794 8 1.566541015190525 4.215638680192315 9 1.3911349648543312 4.21156394829948 >10 7.925613282336546 40.049526095606154 >50 0.04008277919221472 0.8802974679197815 >100 0.020309175702659294 1.2316961533273516 >500 5.415780078259147E-4 0.1226048663459544 >1k 8.123670117388721E-4 0.8862892641501755 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4512 0.40977725627244377 No Hit CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4196 0.38107831722499425 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.022977315123432682 0.0 2 0.0 0.0 0.0 0.07247390303754657 0.0 3 0.0 0.0 0.0 0.1236052406442367 0.0 4 0.0 0.0 0.0 0.20107421218687732 0.0 5 0.0 0.0 0.0 0.3785353732587645 0.0 6 0.0 0.0 0.0 0.6543539741673221 0.0 7 0.0 0.0 0.0 0.8308161215381905 0.0 8 0.0 0.0 0.0 1.2602103741215491 0.0 9 0.0 0.0 0.0 1.7197566765902028 0.0 10 0.0 0.0 0.0 2.294734471240212 0.0 11 0.0 0.0 0.0 2.683714078645991 0.0 12 0.0 0.0 0.0 2.984508022080019 0.0 13 0.0 0.0 0.0 3.1287292727361895 0.0 14 0.0 0.0 0.0 3.1961172878412767 0.0 15 0.0 0.0 0.0 3.271497412554514 0.0 16 0.0 0.0 0.0 3.410087858714033 0.0 17 0.0 0.0 0.0 3.5619379412688925 0.0 18 0.0 0.0 0.0 3.789713065101182 0.0 19 0.0 0.0 0.0 3.91504387486536 0.0 20 0.0 0.0 0.0 4.0456422114167285 0.0 21 0.0 0.0 0.0 4.198218849390511 0.0 22 0.0 0.0 0.0 4.368777733982632 0.0 23 0.0 0.0 0.0 4.567944738194837 0.0 24 0.0 0.0 0.0 4.721520389869638 0.0 25 0.0 0.0 0.0 4.849575782454776 0.0 26 0.0 0.0 0.0 4.979084285877761 0.0 27 0.0 0.0 0.0 5.105323289915592 0.0 28 0.0 0.0 0.0 5.245094388630861 0.0 29 9.081942736534657E-5 0.0 0.0 5.392312680390088 0.0 30 9.081942736534657E-5 0.0 0.0 5.573043340847128 0.0 31 9.081942736534657E-5 0.0 0.0 5.733702907856426 0.0 32 9.081942736534657E-5 0.0 0.0 5.890820517198475 0.0 33 9.081942736534657E-5 0.0 0.0 6.054931222447657 0.0 34 9.081942736534657E-5 0.0 0.0 6.224127815629297 0.0 35 9.081942736534657E-5 0.0 0.0 6.417754834772216 0.0 36 9.081942736534657E-5 0.0 0.0 6.595306815271468 0.0 37 9.081942736534657E-5 0.0 0.0 6.78693580701235 0.0 38 9.081942736534657E-5 0.0 0.0 7.033692191163996 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGATAG 20 7.856336E-4 44.000004 1 ATCCCGT 20 7.856336E-4 44.000004 21 TATGCGA 50 2.7284841E-11 44.0 2 TACGATG 35 1.4460056E-7 44.0 1 GTAACGA 45 4.802132E-10 44.0 2 CGTTTTT 5285 0.0 42.58467 1 CGTAAGA 105 0.0 41.904762 2 TACCGGT 60 3.6379788E-12 40.333332 40 TTTAGCG 50 1.3478711E-9 39.600002 1 ACCGGTA 50 1.3478711E-9 39.600002 41 GCGTAAG 95 0.0 39.368423 1 GTTTTTA 3040 0.0 39.151318 2 TGTACGA 90 0.0 39.11111 2 AGACTTA 700 0.0 38.028572 8 CGACGGT 280 0.0 37.714287 28 CTAACGA 35 7.2899293E-6 37.714287 2 TACGTAG 35 7.2899293E-6 37.714287 1 ACGGTCT 285 0.0 37.05263 30 TTAGCGA 120 0.0 36.666664 2 TACGAGT 30 1.3010597E-4 36.666664 4 >>END_MODULE