##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546483_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1271128 Sequences flagged as poor quality 0 Sequence length 50 %GC 41 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.62935440018629 31.0 31.0 34.0 30.0 34.0 2 31.997930184843696 31.0 31.0 34.0 30.0 34.0 3 32.03428136269518 33.0 31.0 34.0 30.0 34.0 4 35.747557287700374 37.0 35.0 37.0 35.0 37.0 5 35.70539788282533 37.0 35.0 37.0 33.0 37.0 6 35.750069229849395 37.0 35.0 37.0 35.0 37.0 7 36.12507316336357 37.0 35.0 37.0 35.0 37.0 8 18.330120176724925 28.0 0.0 37.0 0.0 37.0 9 27.902540892813313 27.0 17.0 39.0 17.0 39.0 10 33.73211037755443 32.0 32.0 39.0 27.0 39.0 11 35.85853981660384 37.0 35.0 39.0 32.0 39.0 12 36.6901177536802 38.0 35.0 39.0 33.0 39.0 13 36.92394943703545 39.0 37.0 39.0 33.0 39.0 14 38.14258988866582 40.0 37.0 41.0 33.0 41.0 15 38.355066523591645 40.0 37.0 41.0 34.0 41.0 16 38.404480115299165 40.0 37.0 41.0 34.0 41.0 17 38.3615544618638 40.0 37.0 41.0 34.0 41.0 18 38.268640923652065 40.0 37.0 41.0 34.0 41.0 19 38.22384685098589 40.0 37.0 41.0 34.0 41.0 20 38.07944911920751 40.0 36.0 41.0 34.0 41.0 21 37.95813246187638 40.0 36.0 41.0 33.0 41.0 22 37.961475948920956 40.0 36.0 41.0 33.0 41.0 23 37.76891154942697 39.0 36.0 41.0 33.0 41.0 24 37.523351700222165 39.0 35.0 41.0 33.0 41.0 25 37.3855245105135 39.0 35.0 41.0 33.0 41.0 26 37.33528488083026 39.0 35.0 41.0 33.0 41.0 27 37.193344022002506 39.0 35.0 41.0 33.0 41.0 28 37.14856961690719 39.0 35.0 41.0 33.0 41.0 29 37.03007800945302 39.0 35.0 41.0 32.0 41.0 30 36.87136779301534 39.0 35.0 41.0 32.0 41.0 31 36.75408377441139 39.0 35.0 41.0 31.0 41.0 32 36.350978028963254 39.0 35.0 41.0 30.0 41.0 33 36.032545896243334 39.0 35.0 41.0 29.0 41.0 34 35.74648973195461 39.0 35.0 41.0 25.0 41.0 35 35.44393562253369 39.0 35.0 41.0 24.0 41.0 36 35.29518663738034 39.0 35.0 41.0 23.0 41.0 37 35.227732376283114 39.0 35.0 41.0 23.0 41.0 38 35.15533762138825 39.0 35.0 41.0 22.0 41.0 39 35.07652179796212 39.0 35.0 41.0 22.0 41.0 40 35.01692827158241 39.0 35.0 41.0 21.0 41.0 41 34.98938108514642 39.0 35.0 41.0 21.0 41.0 42 34.82507977166737 39.0 35.0 40.0 20.0 41.0 43 34.832193925395394 39.0 35.0 40.0 20.0 41.0 44 34.6014185825503 38.0 34.0 40.0 18.0 41.0 45 34.51586464935081 38.0 34.0 40.0 19.0 41.0 46 34.5070881925345 38.0 34.0 40.0 19.0 41.0 47 34.392038409979165 38.0 34.0 40.0 18.0 41.0 48 34.36126416851804 38.0 34.0 40.0 18.0 41.0 49 34.33227888930147 38.0 34.0 40.0 18.0 41.0 50 33.77062341479379 38.0 33.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 1.0 13 3.0 14 12.0 15 13.0 16 44.0 17 153.0 18 362.0 19 854.0 20 1686.0 21 2977.0 22 5039.0 23 7937.0 24 12383.0 25 19710.0 26 27176.0 27 29815.0 28 28203.0 29 26863.0 30 28662.0 31 34633.0 32 43791.0 33 57041.0 34 82802.0 35 124943.0 36 124765.0 37 190965.0 38 218026.0 39 202267.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.503873724754705 22.152293081420595 26.844818145772887 21.49901504805181 2 37.98217016696981 22.780239283533994 27.245092547721395 11.992498001774802 3 26.053001743333482 23.00759640256528 38.770446406656134 12.168955447445104 4 23.418491292773034 25.298081703809526 38.19819876519123 13.085228238226204 5 20.960202277032682 29.648312365080464 36.46312566476389 12.92835969312296 6 18.441337143072925 37.72861584356571 33.550594432661384 10.279452580699978 7 80.72562322598512 2.625384697685835 14.866795476144024 1.7821966001850325 8 41.26673316927957 50.29344015708882 7.186215707623465 1.253610966008144 9 76.55373809718611 4.505211119572537 16.068720065957166 2.872330717284176 10 35.95892781844157 33.67906300545657 20.7887797295001 9.573229446601758 11 26.97745624358837 22.5653120692802 36.516306776343534 13.9409249107879 12 26.205543422849626 21.169858582298556 35.63512093195965 16.98947706289217 13 20.528538432006847 26.870858009578896 36.50600096921789 16.094602589196366 14 16.140703375269837 30.262648608165343 36.25748154395151 17.3391664726133 15 15.330320785947599 25.20485741797836 43.589787967852175 15.875033828221863 16 18.081813947926566 23.855583387353594 41.868796848153764 16.193805816566073 17 18.219958965580176 23.81026930411414 35.816691946051066 22.153079784254615 18 19.015394201056072 24.77287889181892 37.91058020907415 18.301146698050864 19 21.828250184088464 26.448870609411486 33.80304737209786 17.9198318344022 20 23.577641276094933 25.48256351838682 33.10217381727096 17.83762138824729 21 20.9223618707164 26.638623332976696 35.0052079727612 17.4338068235457 22 20.040074642364893 23.389304617630955 35.11951589454406 21.451104845460094 23 17.59248478516719 27.288361203592398 35.19527537746002 19.92387863378039 24 17.979306568653982 24.693107224449466 39.2725201553266 18.05506605156994 25 18.229163388738193 26.625328055081788 36.704014072540296 18.44149448363973 26 17.63858557124066 29.946866090590408 33.869366421005594 18.54518191716334 27 18.118946321692228 27.797672618335838 35.2678093787565 18.815571681215424 28 17.64708196184806 25.955057240498203 38.69248415580493 17.705376641848815 29 17.957121548734666 23.67291098929455 38.279150486811716 20.090816975159072 30 18.902502344374444 25.659414315474134 36.435669735856656 19.00241360429477 31 22.39286680806339 24.457017703960577 33.24031883492457 19.909796653051462 32 23.0900428595704 24.78405007206198 33.58615340075901 18.539753667608615 33 21.646836510563848 25.315939858141746 33.36863006715296 19.668593564141457 34 19.245347439439616 25.688600990616205 34.2738890182578 20.792162551686378 35 19.16337300413491 25.275031310772793 34.65740664984172 20.90418903525058 36 22.00305555380733 25.604423787376252 32.93909031977897 19.453430339037453 37 19.29538173968318 27.471426953068455 32.94695734811915 20.286233959129216 38 19.181624509884134 28.143192503036673 32.028953811103214 20.646229175975982 39 19.144334795551668 27.525709448615714 31.612866682190937 21.71708907364168 40 21.250731633635635 25.898021285031874 31.783030505189092 21.068216576143396 41 18.80125368963629 25.41939128081515 31.718678213366395 24.060676816182163 42 20.590058593627077 26.645703658482862 30.154555638771235 22.609682109118832 43 20.250517650464783 26.900280695571176 31.038494943074184 21.810706710889853 44 20.516423208362966 28.225560289758388 31.18490034048499 20.07311616139366 45 19.25628260883247 29.357625667910707 29.96165610386995 21.424435619386877 46 21.033208300029578 28.381091440043804 29.96794972654209 20.61775053338452 47 20.295281041720425 26.41299696018025 31.009858959915913 22.28186303818341 48 20.28387385062716 25.048854245992537 32.349535215965666 22.317736687414644 49 20.284267202044166 24.450802751571832 32.68419860155704 22.580731444826956 50 18.907615912795563 27.01277920083579 32.737930405120494 21.341674481248152 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 474.0 1 888.0 2 1302.0 3 20227.5 4 39153.0 5 26773.5 6 14394.0 7 14368.0 8 14342.0 9 14529.5 10 14717.0 11 14710.0 12 14703.0 13 14269.0 14 13835.0 15 12967.0 16 12099.0 17 11376.5 18 10654.0 19 10256.0 20 9858.0 21 9876.5 22 9895.0 23 10494.0 24 11093.0 25 12622.0 26 14151.0 27 16258.5 28 18366.0 29 21297.5 30 24229.0 31 27951.0 32 31673.0 33 35198.0 34 38723.0 35 42426.5 36 46130.0 37 50864.0 38 55598.0 39 63778.0 40 71958.0 41 80603.5 42 89249.0 43 95981.5 44 102714.0 45 107827.5 46 112941.0 47 114211.0 48 115481.0 49 106949.5 50 98418.0 51 85845.0 52 73272.0 53 64250.0 54 55228.0 55 49378.5 56 43529.0 57 39605.0 58 35681.0 59 32086.0 60 28491.0 61 24559.0 62 20627.0 63 16268.5 64 11910.0 65 9208.0 66 6506.0 67 5285.0 68 4064.0 69 3337.5 70 2611.0 71 2108.0 72 1605.0 73 1162.0 74 719.0 75 542.0 76 365.0 77 284.5 78 204.0 79 150.0 80 96.0 81 67.5 82 39.0 83 31.0 84 23.0 85 14.0 86 5.0 87 2.5 88 0.0 89 1.0 90 2.0 91 1.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1271128.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 41.527322866984264 #Duplication Level Percentage of deduplicated Percentage of total 1 70.55363109548838 29.299034179404472 2 8.964729713826825 7.44562450482668 3 4.816251877306909 6.000181401529292 4 3.2755097938100044 5.440926110460683 5 2.4243076301659077 5.033750284339656 6 1.9257002509280954 4.798150563919417 7 1.4984089226426824 4.35574377821469 8 1.2453560880086005 4.13730434808781 9 0.9846656041517475 3.6801473813661367 >10 4.274674166582308 25.478677490436937 >50 0.023563995863575552 0.6500008970404637 >100 0.010713746165449834 0.916679271981898 >500 0.001530532344310012 0.4131329203334072 >1k 5.739496291162546E-4 0.3202574618969163 >5k 0.0 0.0 >10k+ 3.82633086077503E-4 2.0303894061616456 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13177 1.0366383243858996 No Hit CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12379 0.9738594382312403 No Hit CGTTTCTGTCTCTTATACACATCTGACGCTCGTTCTCTCGTATGCCGTCT 1583 0.1245350586250952 No Hit CGTTCTGTCTCTTATACACATCTGACGCTCGTTCTCTCGTATGCCGTCTT 1383 0.1088010019447294 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.04248195303698762 0.0 2 0.0 0.0 0.0 0.1394824124714427 0.0 3 0.0 0.0 0.0 0.2515088960356471 0.0 4 0.0 0.0 0.0 0.38312428016690686 0.0 5 0.0 0.0 0.0 0.7221932016287895 0.0 6 0.0 0.0 0.0 1.3347200281954297 0.0 7 0.0 0.0 0.0 1.7345224084435242 0.0 8 0.0 0.0 0.0 2.468358812015784 0.0 9 0.0 0.0 0.0 3.318941916156359 0.0 10 0.0 0.0 0.0 4.189821953414605 0.0 11 0.0 0.0 0.0 4.69504251342115 0.0 12 7.867028340182893E-5 0.0 0.0 5.131033224034086 0.0 13 7.867028340182893E-5 0.0 0.0 5.404648469705648 0.0 14 7.867028340182893E-5 0.0 0.0 5.566001220962798 0.0 15 7.867028340182893E-5 0.0 0.0 5.698167297077871 0.0 16 7.867028340182893E-5 0.0 0.0 5.887290658375868 0.0 17 7.867028340182893E-5 0.0 0.0 6.089394616435166 0.0 18 7.867028340182893E-5 0.0 0.0 6.406671869394742 0.0 19 7.867028340182893E-5 0.0 0.0 6.578959790044748 0.0 20 1.5734056680365786E-4 0.0 0.0 6.779254331585804 0.0 21 1.5734056680365786E-4 0.0 0.0 6.97435663442234 0.0 22 1.5734056680365786E-4 0.0 0.0 7.184327620821821 0.0 23 1.5734056680365786E-4 0.0 0.0 7.420731822444317 0.0 24 1.5734056680365786E-4 0.0 0.0 7.612136621960967 0.0 25 1.5734056680365786E-4 0.0 0.0 7.772309318967091 0.0 26 1.5734056680365786E-4 0.0 0.0 7.939641011762781 0.0 27 1.5734056680365786E-4 0.0 0.0 8.11594111686628 0.0 28 1.5734056680365786E-4 0.0 0.0 8.307503256949733 0.0 29 1.5734056680365786E-4 0.0 0.0 8.502054867802455 0.0 30 1.5734056680365786E-4 0.0 0.0 8.751124985052646 0.0 31 1.5734056680365786E-4 0.0 0.0 8.958814533233474 0.0 32 2.3601085020548678E-4 0.0 0.0 9.170909617284805 0.0 33 2.3601085020548678E-4 0.0 0.0 9.375295013562758 0.0 34 2.3601085020548678E-4 0.0 0.0 9.592661006602011 0.0 35 2.3601085020548678E-4 0.0 0.0 9.820568817617108 0.0 36 2.3601085020548678E-4 0.0 0.0 10.035417361587504 0.0 37 2.3601085020548678E-4 0.0 0.0 10.254199419727989 0.0 38 2.3601085020548678E-4 0.0 0.0 10.493199740702746 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGTTAG 55 1.8189894E-12 44.0 1 AGCGATC 35 1.4462421E-7 44.0 8 CGTCGAA 20 7.856798E-4 44.0 15 TCGCGCG 30 2.5279296E-6 44.0 1 ATCGACG 20 7.856798E-4 44.0 1 CGTTTTT 14830 0.0 43.495617 1 CGACGGT 195 0.0 42.871796 28 TTAGCGA 130 0.0 42.30769 2 GACGGTC 195 0.0 41.74359 29 GAGCGAT 655 0.0 40.9771 7 CACGACG 200 0.0 40.699997 26 GCGCGAC 265 0.0 40.679245 9 GACCGAT 325 0.0 40.615387 9 ATTGCGA 115 0.0 40.173916 2 GTTTTTA 8160 0.0 40.17157 2 GCGATAT 105 0.0 39.80952 9 ACGACGG 205 0.0 39.707317 27 TCGATAG 50 1.3478711E-9 39.6 1 TATGCGA 95 0.0 39.36842 2 CGAGGTT 180 0.0 39.111115 6 >>END_MODULE