##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546482_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1344928 Sequences flagged as poor quality 0 Sequence length 50 %GC 43 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.606048056104118 31.0 31.0 34.0 30.0 34.0 2 31.97141557020153 31.0 31.0 34.0 30.0 34.0 3 32.04471466130529 33.0 31.0 34.0 30.0 34.0 4 35.7368989269314 37.0 35.0 37.0 35.0 37.0 5 35.69017746674915 37.0 35.0 37.0 33.0 37.0 6 35.73986860263152 37.0 35.0 37.0 33.0 37.0 7 36.10985941254848 37.0 35.0 37.0 35.0 37.0 8 18.148311285065073 18.0 0.0 37.0 0.0 37.0 9 27.799424950629327 19.0 17.0 39.0 17.0 39.0 10 33.65852967593804 32.0 32.0 39.0 27.0 39.0 11 35.81908548264294 37.0 35.0 39.0 32.0 39.0 12 36.56496704656309 37.0 35.0 39.0 33.0 39.0 13 36.744526101025485 39.0 35.0 39.0 33.0 39.0 14 37.93275476456732 40.0 37.0 41.0 33.0 41.0 15 38.187157230721645 40.0 37.0 41.0 33.0 41.0 16 38.2642037343263 40.0 37.0 41.0 34.0 41.0 17 38.22451610792548 40.0 37.0 41.0 34.0 41.0 18 38.17314904589688 40.0 37.0 41.0 34.0 41.0 19 38.15266244735778 40.0 37.0 41.0 34.0 41.0 20 38.035105968497945 40.0 36.0 41.0 34.0 41.0 21 37.90228324490233 40.0 36.0 41.0 33.0 41.0 22 37.90812816745581 40.0 36.0 41.0 33.0 41.0 23 37.760325459801564 39.0 36.0 41.0 33.0 41.0 24 37.58967097123415 39.0 35.0 41.0 33.0 41.0 25 37.460368882200385 39.0 35.0 41.0 33.0 41.0 26 37.41049632396678 39.0 35.0 41.0 33.0 41.0 27 37.25758404910895 39.0 35.0 41.0 33.0 41.0 28 37.248231132075475 39.0 35.0 41.0 33.0 41.0 29 37.15373090604107 39.0 35.0 41.0 32.0 41.0 30 37.04439122391682 39.0 35.0 41.0 32.0 41.0 31 36.98072015751029 39.0 35.0 41.0 32.0 41.0 32 36.67756043446192 39.0 35.0 41.0 31.0 41.0 33 36.47649465250184 39.0 35.0 41.0 30.0 41.0 34 36.284839039710675 39.0 35.0 41.0 30.0 41.0 35 36.074699166052014 39.0 35.0 41.0 29.0 41.0 36 35.932084840229365 39.0 35.0 41.0 27.0 41.0 37 35.860947203121654 39.0 35.0 41.0 27.0 41.0 38 35.782646357277116 39.0 35.0 41.0 27.0 41.0 39 35.73231280782317 39.0 35.0 41.0 27.0 41.0 40 35.67081360489186 39.0 35.0 41.0 26.0 41.0 41 35.68407974255871 39.0 35.0 41.0 26.0 41.0 42 35.53492752028362 39.0 35.0 41.0 25.0 41.0 43 35.54439791572486 39.0 35.0 40.0 26.0 41.0 44 35.31174456922601 38.0 35.0 40.0 24.0 41.0 45 35.22598756215946 38.0 35.0 40.0 24.0 41.0 46 35.23447128768232 38.0 35.0 40.0 24.0 41.0 47 35.13422428561231 38.0 35.0 40.0 24.0 41.0 48 35.11881230816817 38.0 35.0 40.0 24.0 41.0 49 35.09204433248471 38.0 34.0 40.0 24.0 41.0 50 34.48526017749649 38.0 34.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 0.0 12 0.0 13 1.0 14 5.0 15 21.0 16 48.0 17 137.0 18 321.0 19 783.0 20 1531.0 21 2665.0 22 4338.0 23 6786.0 24 10700.0 25 16251.0 26 22205.0 27 24599.0 28 24547.0 29 25206.0 30 28919.0 31 36110.0 32 46574.0 33 62076.0 34 93693.0 35 146225.0 36 134413.0 37 208212.0 38 238060.0 39 210501.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.68407528135335 23.601412120202717 28.273260724737682 16.44125187370625 2 34.66274774560423 23.6503366722977 29.168773346974707 12.518142235123367 3 27.369048752052155 23.81398855552119 35.85098979276214 12.965972899664518 4 24.352530395679175 26.341633158057533 35.46055997049656 13.845276475766733 5 22.193009588617382 31.177133645815985 33.23389802279378 13.395958742772848 6 19.191733683884937 39.63543029812748 30.64877822455923 10.524057793428348 7 84.91004722929407 2.9362910133479265 10.56904161412358 1.5846201432344336 8 43.1363612029789 50.83952449499155 4.996550001189655 1.0275643008398962 9 81.36182754764567 4.522695638725642 11.540022960336909 2.575453853291775 10 40.73794284898523 33.04407373480216 16.66825287301625 9.549730543196365 11 32.194362820909376 22.129363058840323 31.523620595303242 14.152653524947059 12 29.812450926741057 22.34677246663018 31.423317828166265 16.41745877846249 13 20.761854909705203 31.298032311023338 32.29169145114088 15.648421328130576 14 15.995428751576293 34.09386970901044 33.33033441195365 16.58036712745961 15 16.013645340122295 24.840437555021534 43.85305384377454 15.292863261081635 16 17.85277724904233 23.124732327678508 41.48697922862785 17.535511194651313 17 18.608877203835448 22.533473910871066 32.60196828380404 26.255680601489445 18 20.968854838325917 23.9963031478265 35.617073925146926 19.41776808870066 19 24.276318137476505 25.579213162340288 30.653462490185348 19.491006209997856 20 25.65609460134669 25.58887910728307 29.681960670013563 19.073065621356683 21 21.864590520830856 26.8993581812558 32.57854695567347 18.657504342239882 22 21.526579861524187 23.811757952842086 31.855236860263155 22.806425325370576 23 18.557647695638728 28.173552784981798 31.50874991077589 21.76004960860358 24 18.770447191225106 24.940591615313238 37.661198220276475 18.627762973185185 25 17.873001379999522 27.19982036213091 35.39884662970806 19.528331628161506 26 17.99256168359942 31.63143305812653 31.05155071498251 19.324454543291537 27 19.0589384710557 28.760201289585762 32.92250588879107 19.258354350567465 28 17.52465559494635 26.949026267577146 37.771315639201504 17.755002498275 29 17.767419519855338 24.735376168835803 36.8922351233672 20.60496918794166 30 19.948428466059152 27.28971365009874 33.321412001237235 19.440445882604866 31 25.471846820052818 25.44374122629613 29.170409122272716 19.914002831378333 32 25.32380915558305 27.030666325632303 29.272496371552975 18.373028147231672 33 24.740283494729827 26.59064277046801 28.96779604558757 19.70127768921459 34 19.925601965309667 27.21513716719408 31.007682195626828 21.851578671869422 35 20.836654452877777 26.53182921316234 31.434768255252326 21.196748078707557 36 25.062679935282784 26.83757048704466 28.770239001641723 19.329510576030838 37 20.626382973661045 29.46574091698589 30.39434081229627 19.513535297056794 38 20.174685931142783 31.195722001475172 27.71285897832449 20.916733089057555 39 20.461987556211188 29.066463037426537 29.29383580384972 21.17771360251255 40 22.032331842299367 26.99319220062338 28.241140046158602 22.73333591091865 41 18.57355932808299 25.97135311332651 29.33577113421685 26.119316424373647 42 21.597959147255466 27.422806276618527 27.46481596040829 23.51441861571772 43 21.65915201408551 27.289118822717644 28.435722953198983 22.616006209997856 44 20.74460491565348 29.071072949630018 29.265730210093032 20.918591924623474 45 19.531231411644338 31.4059934806919 27.177588688762523 21.885186418901235 46 21.87842025744129 29.482767850769708 28.352149706155274 20.28666218563373 47 21.31891075209974 26.428701015965167 29.218218373028147 23.034169858906946 48 21.585839539365676 25.249083965833112 30.831985057936183 22.333091436865022 49 20.93703157343739 24.23750565086012 31.495143234433364 23.330319541269123 50 19.509371505389137 29.00080896523829 29.701813033857576 21.788006495515003 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 311.0 1 692.5 2 1074.0 3 12220.0 4 23366.0 5 16538.5 6 9711.0 7 9816.0 8 9921.0 9 10268.5 10 10616.0 11 10800.5 12 10985.0 13 10706.5 14 10428.0 15 9887.0 16 9346.0 17 8892.5 18 8439.0 19 8241.5 20 8044.0 21 8087.0 22 8130.0 23 8752.0 24 9374.0 25 11159.5 26 12945.0 27 15227.5 28 17510.0 29 20167.5 30 22825.0 31 26636.5 32 30448.0 33 34152.0 34 37856.0 35 42675.5 36 47495.0 37 54069.5 38 60644.0 39 71799.0 40 82954.0 41 94949.5 42 106945.0 43 114034.0 44 121123.0 45 123673.0 46 126223.0 47 125244.5 48 124266.0 49 116784.5 50 109303.0 51 97053.0 52 84803.0 53 75164.0 54 65525.0 55 58313.0 56 51101.0 57 45322.0 58 39543.0 59 34699.5 60 29856.0 61 25773.0 62 21690.0 63 17588.5 64 13487.0 65 10734.5 66 7982.0 67 6200.0 68 4418.0 69 3577.0 70 2736.0 71 2278.5 72 1821.0 73 1370.0 74 919.0 75 680.0 76 441.0 77 327.5 78 214.0 79 137.5 80 61.0 81 49.5 82 38.0 83 21.5 84 5.0 85 4.0 86 3.0 87 2.0 88 1.0 89 0.5 90 0.0 91 1.0 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1344928.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 34.911503900482565 #Duplication Level Percentage of deduplicated Percentage of total 1 71.96145944258052 25.122827720140677 2 7.448958122201045 5.201086610755061 3 3.8032917808400333 3.9833590752441026 4 2.578609491165328 3.600925412345589 5 2.0166863304272464 3.520277634538034 6 1.5715618372982953 3.2919352327613396 7 1.32776406066251 3.244796812791786 8 1.1301173304341872 3.156327647156485 9 0.9905780430387234 3.1124312291950904 >10 7.087241113207667 42.007139412533704 >50 0.06914424577292293 1.546302352475536 >100 0.013301008852898647 0.8904440769129034 >500 6.43596759325121E-4 0.1302449020504863 >1k 2.1453225310837364E-4 0.09998674194215021 >5k 4.290645062167473E-4 1.0919151391570097 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7563 0.5623349354017464 No Hit CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7016 0.5216636132194437 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.035094815484546384 0.0 2 0.0 0.0 0.0 0.11985771729044231 0.0 3 0.0 0.0 0.0 0.21220466820528683 0.0 4 0.0 0.0 0.0 0.319273596802208 0.0 5 0.0 0.0 0.0 0.5569071355492636 0.0 6 0.0 0.0 0.0 0.9278563610840134 0.0 7 0.0 0.0 0.0 1.1820707130790644 0.0 8 0.0 0.0 0.0 1.7031394989174142 0.0 9 0.0 0.0 0.0 2.2538753003878274 0.0 10 0.0 0.0 0.0 2.906252230602679 0.0 11 0.0 0.0 0.0 3.3415171667182184 0.0 12 0.0 0.0 0.0 3.7309060410668824 0.0 13 0.0 0.0 0.0 3.9365676080801353 0.0 14 0.0 0.0 0.0 4.0390266244735775 0.0 15 0.0 0.0 0.0 4.140965166908563 0.0 16 0.0 0.0 0.0 4.340381046420329 0.0 17 0.0 0.0 0.0 4.571545837397987 0.0 18 0.0 0.0 0.0 4.922122225130267 0.0 19 0.0 0.0 0.0 5.090904494515692 0.0 20 0.0 0.0 0.0 5.285933522091889 0.0 21 0.0 0.0 0.0 5.483787979728283 0.0 22 0.0 0.0 0.0 5.700751266982322 0.0 23 0.0 0.0 0.0 5.9524376026077235 0.0 24 0.0 0.0 0.0 6.142336244021985 0.0 25 0.0 0.0 0.0 6.30925967784149 0.0 26 0.0 0.0 0.0 6.473655095291346 0.0 27 7.435342263675082E-5 0.0 0.0 6.640206761997669 0.0 28 7.435342263675082E-5 0.0 0.0 6.817837088676866 0.0 29 7.435342263675082E-5 0.0 0.0 7.009668919079683 0.0 30 7.435342263675082E-5 0.0 0.0 7.255630041162055 0.0 31 7.435342263675082E-5 0.0 0.0 7.460399367103666 0.0 32 7.435342263675082E-5 0.0 0.0 7.665094339622642 0.0 33 7.435342263675082E-5 0.0 0.0 7.859825953508292 0.0 34 7.435342263675082E-5 0.0 0.0 8.070989673796664 0.0 35 7.435342263675082E-5 0.0 0.0 8.301336577125317 0.0 36 7.435342263675082E-5 0.0 0.0 8.514656546670157 0.0 37 7.435342263675082E-5 0.0 0.0 8.733404316067476 0.0 38 7.435342263675082E-5 0.0 0.0 8.960479668800113 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTCGACA 30 2.5280406E-6 44.0 40 GCCGGAT 30 2.5280406E-6 44.0 19 GACCCCG 25 4.443246E-5 44.0 21 AACGCGA 35 1.446333E-7 44.0 2 CCGGTCA 20 7.856961E-4 44.0 31 TCGACAT 30 2.5280406E-6 44.0 41 CGTTTTT 10335 0.0 43.297535 1 CGGTCTA 195 0.0 42.87179 31 GAGCGAT 855 0.0 42.198833 7 GTTGCGA 100 0.0 41.8 2 GCGAGGT 220 0.0 40.000004 5 TCACGAC 205 0.0 39.707317 25 TATACGA 45 2.3514076E-8 39.11111 2 CACGACG 210 0.0 38.761906 26 GCCGATC 40 4.1252315E-7 38.5 9 TGCGCGA 40 4.1252315E-7 38.5 2 CGACGGT 220 0.0 38.000004 28 GTTTTTA 6070 0.0 37.874794 2 ACGACGG 215 0.0 37.860466 27 TCGATTG 35 7.2911334E-6 37.714287 1 >>END_MODULE