SRR1546480_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546480_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1962210
Sequences flagged as poor quality	0
Sequence length	50
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14100	0.7185775222835475	No Hit
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13492	0.6875920518191223	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCC	5928	0.3021083370281468	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTT	5172	0.2635803507269864	No Hit
GAATCTGACTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTT	4375	0.222962883687271	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATG	4227	0.21542036785053587	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGTCTCCT	2070	0.10549329582460593	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	18405	0.0	43.246944	1
CGACGGT	175	0.0	42.74286	28
CGATGAA	3335	0.0	41.22939	19
GAGCGAT	1105	0.0	41.013577	7
CCGATGA	3290	0.0	40.990883	18
TGTACGA	140	0.0	40.857143	2
GTTTTTA	10320	0.0	40.01357	2
GTTTACG	155	0.0	39.741936	1
GCGCGAC	465	0.0	39.741932	9
CGAGGTA	150	0.0	39.600002	6
CACGACG	190	0.0	39.368423	26
CGCGCGA	45	2.3523171E-8	39.11111	2
TAATGCG	40	4.126523E-7	38.5	1
CCACCGA	3880	0.0	38.103092	15
GCTTGCG	110	0.0	38.0	1
ACGAGAT	585	0.0	37.982906	5
ACCGATG	3565	0.0	37.890602	17
TTAGCGA	215	0.0	37.860466	2
ACGTGCG	35	7.2928397E-6	37.714287	1
CGCACGA	35	7.2928397E-6	37.714287	2