SRR1546474_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546474_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1399069
Sequences flagged as poor quality	0
Sequence length	50
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8451	0.6040445467664569	No Hit
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8046	0.5750967250364349	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGATCG	25	4.4433364E-5	44.0	9
CTATTCG	20	7.857069E-4	44.0	1
TGCGTTG	40	8.314601E-9	44.0	1
CGTTTTT	11275	0.0	43.336586	1
AGCGATC	100	0.0	41.800003	8
AGCGATA	215	0.0	40.930233	8
GAGCGAT	825	0.0	40.8	7
GACCGAT	440	0.0	39.5	9
CGGTCTA	195	0.0	39.48718	31
CTTGCGA	45	2.3515895E-8	39.11111	2
ACTACGG	45	2.3515895E-8	39.11111	2
TTCGCGA	45	2.3515895E-8	39.11111	2
GTTGCGA	45	2.3515895E-8	39.11111	2
GTTTTTA	6570	0.0	39.077625	2
CGAGACC	125	0.0	38.72	6
CGACGGT	205	0.0	38.634148	28
CACGACG	205	0.0	38.634148	26
CGATTCG	40	4.1253952E-7	38.5	10
AACGGCG	70	0.0	37.714287	8
TCGACGA	35	7.291341E-6	37.714287	2