SRR1546472_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546472_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1676483
Sequences flagged as poor quality	0
Sequence length	50
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13057	0.7788328303955364	No Hit
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12471	0.7438787032138113	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCATCCCACTTCGTATGCCGTCT	1734	0.10343081319643564	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTACGCG	20	7.8575144E-4	44.000004	1
TTTCGCG	30	2.5284153E-6	44.0	1
TCGTGCG	25	4.4437165E-5	44.0	1
CGTTTTT	17115	0.0	43.2416	1
GAGCGAT	960	0.0	41.020832	7
CGACGGT	145	0.0	40.96552	28
TATACGG	60	3.6379788E-12	40.333332	2
GTTTTTA	9670	0.0	39.882107	2
CGAGGTT	290	0.0	39.448277	6
TATACGA	90	0.0	39.11111	2
TGTACGA	85	0.0	38.82353	2
GCGAGAC	380	0.0	38.789474	5
CTTGCGA	80	0.0	38.500004	2
TCGCGGA	40	4.12605E-7	38.500004	2
CGAAGAG	390	0.0	38.358974	3
CGTAAGA	110	0.0	38.0	2
CGGGTAT	105	0.0	37.714287	6
CGCGCGA	35	7.292205E-6	37.714287	2
ATATCCG	35	7.292205E-6	37.714287	1
CGATCGT	35	7.292205E-6	37.714287	10