SRR1546467_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546467_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1475137
Sequences flagged as poor quality	0
Sequence length	50
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5161	0.34986580907400466	No Hit
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4890	0.331494634057718	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAACGTTGCTCGTATGCC	1950	0.1321911117408078	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA	1908	0.12934391856485195	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAACGTTGCTCGTATG	1489	0.10093977711900658	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCATCG	20	7.8572077E-4	44.000004	20
CATCGAA	20	7.8572077E-4	44.000004	40
TCGGCAT	50	2.7284841E-11	44.0	32
CGACGGT	195	0.0	42.871796	28
CGGTCTA	195	0.0	42.871796	31
CGTTTTT	7110	0.0	42.390995	1
GCGCGAC	190	0.0	41.68421	9
CGACCCG	165	0.0	41.333332	32
CGCAAGA	80	0.0	41.250004	2
TGCGCGA	70	0.0	40.857143	2
CACGACG	205	0.0	40.780483	26
GAGCGAT	940	0.0	40.723408	7
CGCGCGA	60	3.6379788E-12	40.333336	2
GCCGATT	60	3.6379788E-12	40.333336	9
ACCGCGA	50	1.3478711E-9	39.6	2
TTTCGCG	45	2.3517714E-8	39.11111	1
CCAGTCG	45	2.3517714E-8	39.11111	28
GACGGTC	215	0.0	38.883724	29
CGATGAA	705	0.0	38.695034	19
GCGATAC	120	0.0	38.500004	9