SRR1546462_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546462_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1543047
Sequences flagged as poor quality	0
Sequence length	50
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11825	0.7663408826821219	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCC	11263	0.7299194386172294	No Hit
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10881	0.7051632257474982	No Hit
GAATCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCTT	8983	0.5821598434785201	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATG	8047	0.5215006412636816	No Hit
GAATCTGACTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCTT	7518	0.48721782291790205	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCCATTAGC	3339	0.21639003867024142	No Hit
GAACTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCTTC	2547	0.16506302141153184	No Hit
GAACTGTATCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCTTC	2106	0.13648320498338676	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGT	1749	0.1133471631129836	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTC	1561	0.1011634771980374	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGCGA	30	2.5282825E-6	44.0	2
TGCGCGA	60	0.0	44.0	2
AACGCGA	35	1.446515E-7	44.0	2
TTCGCGA	25	4.443551E-5	44.0	2
CGTCCGG	20	7.8573206E-4	44.0	2
TGTACGA	50	2.7284841E-11	44.0	2
TCGTTAG	85	0.0	43.999996	1
CGTTTTT	16465	0.0	43.45217	1
CGGCGAT	665	0.0	43.338345	31
CGACGGT	175	0.0	42.742855	28
CACGACG	170	0.0	42.70588	26
CCGATGA	5855	0.0	42.684887	18
CGATGAA	6090	0.0	42.663383	19
ACGGTCT	180	0.0	41.555557	30
TCACGAC	175	0.0	41.485714	25
ACCGATG	6065	0.0	41.134377	17
GATGAAT	6620	0.0	40.942596	20
GCTCGAA	420	0.0	40.857143	42
CTCCGCT	130	0.0	40.615383	38
GAGCGAT	765	0.0	40.549023	7