SRR1546460_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546460_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1366975
Sequences flagged as poor quality	0
Sequence length	50
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4540	0.332120192395618	No Hit
CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4245	0.31053969531264286	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGCGA	20	7.857005E-4	44.000004	2
ACTACGC	20	7.857005E-4	44.000004	36
TCGACAG	40	8.314601E-9	44.000004	1
TAGTACG	20	7.857005E-4	44.000004	1
TTGTACG	45	4.802132E-10	44.0	1
TATGCGA	105	0.0	44.0	2
ACTCGAT	30	2.5280697E-6	44.0	12
CGTTTTT	6540	0.0	42.856266	1
CGACGGT	195	0.0	40.615387	28
TATAGCG	65	0.0	40.615387	1
GAGCGAT	820	0.0	40.512196	7
GCGTAAG	120	0.0	40.333332	1
GCGTAAC	60	3.6379788E-12	40.333332	32
AGCGATA	215	0.0	39.906975	8
CGGTCTA	200	0.0	39.6	31
TCGTAGA	45	2.3515895E-8	39.11111	2
CCGGTCA	45	2.3515895E-8	39.11111	32
GTTTTTA	3765	0.0	39.091633	2
GACCGAT	480	0.0	38.958332	9
GTATGCG	85	0.0	38.82353	1