##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546457_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1570342 Sequences flagged as poor quality 0 Sequence length 50 %GC 42 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.546964291854895 31.0 31.0 34.0 30.0 34.0 2 31.92057972085062 31.0 31.0 34.0 30.0 34.0 3 32.00855418755914 33.0 31.0 34.0 30.0 34.0 4 35.70339645758695 37.0 35.0 37.0 35.0 37.0 5 35.644901556476235 37.0 35.0 37.0 33.0 37.0 6 35.692346635318934 37.0 35.0 37.0 33.0 37.0 7 36.07460222040804 37.0 35.0 37.0 35.0 37.0 8 18.35576645087503 29.0 0.0 37.0 0.0 37.0 9 27.903592338484227 27.0 17.0 39.0 17.0 39.0 10 33.60947551552464 32.0 32.0 39.0 27.0 39.0 11 35.73260410789497 37.0 35.0 39.0 32.0 39.0 12 36.486442443747926 37.0 35.0 39.0 32.0 39.0 13 36.68274808926972 39.0 35.0 39.0 33.0 39.0 14 37.8667990794362 40.0 36.0 41.0 33.0 41.0 15 38.11716301289783 40.0 37.0 41.0 33.0 41.0 16 38.191032908754906 40.0 37.0 41.0 33.0 41.0 17 38.16433044521512 40.0 37.0 41.0 33.0 41.0 18 38.11038487157575 40.0 37.0 41.0 33.0 41.0 19 38.110692447887146 40.0 37.0 41.0 34.0 41.0 20 37.99758969702141 40.0 36.0 41.0 34.0 41.0 21 37.87188013821193 40.0 36.0 41.0 33.0 41.0 22 37.877161790234226 40.0 36.0 41.0 33.0 41.0 23 37.727234576926556 39.0 36.0 41.0 33.0 41.0 24 37.57437551819922 39.0 35.0 41.0 33.0 41.0 25 37.45851922702188 39.0 35.0 41.0 33.0 41.0 26 37.40622807006372 39.0 35.0 41.0 33.0 41.0 27 37.24781034959263 39.0 35.0 41.0 32.0 41.0 28 37.25586146202547 39.0 35.0 41.0 33.0 41.0 29 37.17565154596897 39.0 35.0 41.0 32.0 41.0 30 37.073437505970034 39.0 35.0 41.0 32.0 41.0 31 37.0241667101816 39.0 35.0 41.0 32.0 41.0 32 36.73481827525469 39.0 35.0 41.0 31.0 41.0 33 36.556788266505 39.0 35.0 41.0 30.0 41.0 34 36.402040447240154 39.0 35.0 41.0 30.0 41.0 35 36.208988869940434 39.0 35.0 41.0 30.0 41.0 36 36.06881430923964 39.0 35.0 41.0 29.0 41.0 37 36.002119283570075 39.0 35.0 41.0 29.0 41.0 38 35.94127967028838 39.0 35.0 41.0 28.0 41.0 39 35.86910876738953 39.0 35.0 41.0 27.0 41.0 40 35.81699145791172 39.0 35.0 41.0 27.0 41.0 41 35.84260498668443 39.0 35.0 41.0 27.0 41.0 42 35.68325498521978 39.0 35.0 41.0 27.0 41.0 43 35.709369678706935 39.0 35.0 41.0 27.0 41.0 44 35.48292346507958 39.0 35.0 40.0 26.0 41.0 45 35.412449007923115 38.0 35.0 40.0 25.0 41.0 46 35.41393721877145 38.0 35.0 40.0 26.0 41.0 47 35.29181286624188 38.0 35.0 40.0 25.0 41.0 48 35.28642996239036 38.0 35.0 40.0 25.0 41.0 49 35.25283345920825 38.0 35.0 40.0 26.0 41.0 50 34.64376295100048 38.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 0.0 13 3.0 14 8.0 15 15.0 16 52.0 17 164.0 18 396.0 19 947.0 20 1916.0 21 3304.0 22 5133.0 23 7917.0 24 12255.0 25 18161.0 26 24634.0 27 26989.0 28 27099.0 29 28750.0 30 33702.0 31 42483.0 32 55802.0 33 73849.0 34 109279.0 35 167714.0 36 155601.0 37 243343.0 38 278038.0 39 252786.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.43824720984346 24.112772886415826 28.634208344424334 15.814771559316378 2 32.842399935810164 24.71359742017981 29.48446898828408 12.959533655725949 3 27.500378898354626 24.805806633204742 34.51362824149135 13.180186226949289 4 24.732128415338824 26.94508584754149 34.40040449787371 13.922381239245974 5 22.092384970917163 31.51721090055542 33.17742249777437 13.212981630753045 6 19.072342203163387 40.08528078596892 30.110765680342244 10.731611330525451 7 85.20073971147686 3.1703285016894407 9.989352637833033 1.6395791490006635 8 43.73505898715057 50.4339818969371 4.6281001208653905 1.2028589950469388 9 81.43996658052832 4.650961382934418 11.140503151542786 2.7685688849944787 10 41.02329301515211 32.062697170425295 16.915423519207916 9.998586295214674 11 31.67150849942242 22.80388603246936 31.077879850376544 14.446725617731678 12 29.47638157802568 22.539867111750176 30.838887325181393 17.14486398504275 13 20.84195672025584 31.445315733770094 31.588596624174865 16.1241309217992 14 16.305174286875086 34.0369804794115 32.4246565397856 17.23318869392782 15 15.589470319204352 25.039832087532528 43.13041362964246 16.240283963620662 16 17.403087989750006 23.593522939588958 40.84416006194829 18.159229008712753 17 18.394082308185094 23.510037940779778 32.18400832430133 25.911871426733796 18 20.088999721079865 24.979463072375317 35.385285498318204 19.546251708226617 19 23.5397130051925 26.736532551507885 30.37261946760642 19.351134975693192 20 25.18846213117907 25.826157614073875 29.769693480783165 19.21568677396389 21 21.093112201036462 27.59621789393648 32.067091117731046 19.243578787296016 22 20.734145810275724 24.15754020461785 31.624321326182447 23.48399265892398 23 18.386822743071253 28.765198918452157 31.329162691948632 21.51881564652795 24 18.01868637532461 25.274048583047517 37.97236525546664 18.73489978616123 25 17.611577605387872 27.649136302792638 34.86075007864529 19.8785360131742 26 17.817583685592055 30.96159944776361 31.302225884552538 19.9185909820918 27 18.856784063598887 29.522931947308294 32.31264272368694 19.30764126540588 28 16.853717215740264 27.264634073341988 37.28219712648582 18.599451584431925 29 17.613997460425818 24.57655720855712 36.2742638227851 21.535181508231965 30 19.926359990371527 27.522221274091883 32.742612755692704 19.80880597984388 31 24.673733492449415 25.874936797207233 28.640512703602145 20.810817006741207 32 24.767279993784793 27.14166722917683 28.820537182346268 19.27051559469211 33 23.83060505291204 27.67683727493756 28.501689440898865 19.990868231251536 34 20.15923919757607 27.21165198409009 30.311549968096124 22.317558850237717 35 19.82115997661656 27.82030920652953 30.73005752886951 21.628473287984402 36 24.02553074425826 28.170360341887307 28.526397434444217 19.27771147941022 37 19.935020524191547 31.198235798316542 29.19510527006219 19.67163840742972 38 19.641835982225526 31.980485779530827 28.075349191450016 20.30232904679363 39 19.967306484829418 31.112394624865157 28.43144996440266 20.488848925902765 40 21.309880268119937 27.659516207297518 28.734887050082087 22.29571647450046 41 18.332630726300387 26.904712476645216 28.90994445795884 25.85271233909556 42 20.703897622301383 27.987470245335093 27.47318736937559 23.835444762987933 43 20.785790611217177 27.768473364400876 28.714445643051008 22.731290381330947 44 20.134785925613656 29.44976317260826 29.33959608798593 21.075854813792155 45 18.77590996101486 31.37736875152037 27.63780119235173 22.208920095113037 46 21.359933059168004 29.996968813162994 28.394706376063304 20.248391751605702 47 20.674349918680136 26.938463086385006 29.16810478227036 23.219082212664503 48 21.17767976657314 25.327285393882352 30.886711302378718 22.608323537165788 49 20.208527823875308 25.192091913735986 31.74760657232628 22.85177369006242 50 19.023690380821503 29.216119800654887 30.02925477380087 21.73093504472274 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 392.0 1 816.0 2 1240.0 3 12695.5 4 24151.0 5 17145.5 6 10140.0 7 10176.0 8 10212.0 9 10558.0 10 10904.0 11 10994.0 12 11084.0 13 10643.5 14 10203.0 15 9840.5 16 9478.0 17 9160.5 18 8843.0 19 8762.5 20 8682.0 21 9270.0 22 9858.0 23 11183.0 24 12508.0 25 14323.5 26 16139.0 27 19031.0 28 21923.0 29 25852.0 30 29781.0 31 35269.5 32 40758.0 33 45734.5 34 50711.0 35 56374.0 36 62037.0 37 68606.0 38 75175.0 39 86924.0 40 98673.0 41 113376.5 42 128080.0 43 135966.5 44 143853.0 45 147800.0 46 151747.0 47 149163.0 48 146579.0 49 137065.0 50 127551.0 51 112340.5 52 97130.0 53 84718.0 54 72306.0 55 63035.5 56 53765.0 57 47836.0 58 41907.0 59 37340.5 60 32774.0 61 27411.0 62 22048.0 63 17548.0 64 13048.0 65 10009.0 66 6970.0 67 5417.5 68 3865.0 69 3182.5 70 2500.0 71 2050.0 72 1600.0 73 1228.5 74 857.0 75 664.0 76 471.0 77 346.5 78 222.0 79 168.0 80 114.0 81 81.5 82 49.0 83 27.0 84 5.0 85 4.0 86 3.0 87 2.0 88 1.0 89 1.5 90 2.0 91 1.5 92 1.0 93 1.5 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1570342.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.94094275324756 #Duplication Level Percentage of deduplicated Percentage of total 1 73.92623009846363 24.35199713636898 2 6.946254123961679 4.576323188938629 3 3.163793339472924 3.1265500583605057 4 2.096321195356697 2.7621918595465784 5 1.642006790925023 2.7044625850152464 6 1.3172792041064811 2.6035451311509066 7 1.1213445239601751 2.5856702039307837 8 0.9470480366928112 2.495732412901872 9 0.839288954907284 2.488227247533044 >10 7.887250161778901 47.95300355272895 >50 0.094089811239532 1.9753285774833744 >100 0.017125337694015426 1.016136169661673 >500 0.0013778950085848699 0.2808292207842631 >1k 1.9684214408355284E-4 0.1111386018065636 >5k 3.936842881671057E-4 0.9688640537886074 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7804 0.49696180831946163 No Hit CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7138 0.45455066475965106 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 1714 0.10914819829056345 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.040628092479217906 0.0 2 0.0 0.0 0.0 0.13621236647813023 0.0 3 0.0 0.0 0.0 0.21613126312612158 0.0 4 0.0 0.0 0.0 0.3398622720401034 0.0 5 0.0 0.0 0.0 0.6367402769587771 0.0 6 0.0 0.0 0.0 1.0467783450993478 0.0 7 0.0 0.0 0.0 1.340217608648307 0.0 8 0.0 0.0 0.0 1.993578468894037 0.0 9 0.0 0.0 0.0 2.603509299248189 0.0 10 0.0 0.0 0.0 3.379900684054811 0.0 11 0.0 0.0 0.0 3.872404864672791 0.0 12 0.0 0.0 0.0 4.389489678044655 0.0 13 0.0 0.0 0.0 4.624024575538322 0.0 14 0.0 0.0 0.0 4.738967689840812 0.0 15 0.0 0.0 0.0 4.856903782742868 0.0 16 0.0 0.0 0.0 5.069277902520597 0.0 17 0.0 0.0 0.0 5.335334595903313 0.0 18 0.0 0.0 0.0 5.703343602858485 0.0 19 0.0 0.0 0.0 5.90081651003412 0.0 20 6.368039573545126E-5 0.0 0.0 6.111853341501406 0.0 21 6.368039573545126E-5 0.0 0.0 6.357723349435982 0.0 22 6.368039573545126E-5 0.0 0.0 6.618558250368391 0.0 23 6.368039573545126E-5 0.0 0.0 6.902954897722917 0.0 24 6.368039573545126E-5 0.0 0.0 7.122270180635811 0.0 25 6.368039573545126E-5 0.0 0.0 7.3061791635197935 0.0 26 6.368039573545126E-5 0.0 0.0 7.481618653770962 0.0 27 6.368039573545126E-5 0.0 0.0 7.670813109500988 0.0 28 6.368039573545126E-5 0.0 0.0 7.873507809126929 0.0 29 6.368039573545126E-5 0.0 0.0 8.091676844916584 0.0 30 6.368039573545126E-5 0.0 0.0 8.371743225361099 0.0 31 6.368039573545126E-5 0.0 0.0 8.607424369978006 0.0 32 6.368039573545126E-5 0.0 0.0 8.821135778066179 0.0 33 6.368039573545126E-5 0.0 0.0 9.037203360796566 0.0 34 6.368039573545126E-5 0.0 0.0 9.262313559721386 0.0 35 6.368039573545126E-5 0.0 0.0 9.521110687990259 0.0 36 6.368039573545126E-5 0.0 0.0 9.759020646457905 0.0 37 6.368039573545126E-5 0.0 0.0 10.0043812112266 0.0 38 6.368039573545126E-5 0.0 0.0 10.253180517365006 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGCGACA 20 7.857363E-4 44.000004 24 CTTCGCG 25 4.4435867E-5 44.0 1 GCGTTAG 170 0.0 44.0 1 TCTAGCG 30 2.5283116E-6 44.0 1 CTATGCG 35 1.4465331E-7 43.999996 1 CGTTTTT 10725 0.0 43.138462 1 CGACGGT 380 0.0 42.842106 28 GAGCGAT 985 0.0 41.766495 7 CGTTAGA 195 0.0 41.74359 2 CGGTCTA 390 0.0 41.74359 31 TAGTGCG 70 0.0 40.85714 1 AGTTGCG 65 0.0 40.615383 1 ACGTCGC 125 0.0 40.48 20 AAGCGAC 120 0.0 40.333332 15 TCACGAC 405 0.0 40.19753 25 ACGGTCT 405 0.0 40.19753 30 GTGATCG 55 7.8216544E-11 40.0 1 TACGTAG 50 1.3478711E-9 39.600002 1 GTTTTTA 6220 0.0 38.800644 2 GACCGAT 570 0.0 38.59649 9 >>END_MODULE