##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546451_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1209933 Sequences flagged as poor quality 0 Sequence length 50 %GC 45 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.580237914000197 31.0 31.0 34.0 30.0 34.0 2 31.963521120590975 31.0 31.0 34.0 30.0 34.0 3 32.03834427195555 33.0 31.0 34.0 30.0 34.0 4 35.74070795655627 37.0 35.0 37.0 35.0 37.0 5 35.702442201345036 37.0 35.0 37.0 33.0 37.0 6 35.741622056758516 37.0 35.0 37.0 35.0 37.0 7 36.06284645513429 37.0 35.0 37.0 35.0 37.0 8 18.772736176300672 32.0 0.0 37.0 0.0 37.0 9 28.11526836609961 32.0 17.0 39.0 17.0 39.0 10 33.80838691068018 33.0 32.0 39.0 27.0 39.0 11 35.94611106565405 37.0 35.0 39.0 32.0 39.0 12 36.594130418791785 37.0 35.0 39.0 33.0 39.0 13 36.76355467616802 39.0 35.0 39.0 33.0 39.0 14 37.903064053960016 40.0 37.0 41.0 33.0 41.0 15 38.13714561054207 40.0 37.0 41.0 33.0 41.0 16 38.199167226615025 40.0 37.0 41.0 33.0 41.0 17 38.14363109362254 40.0 37.0 41.0 33.0 41.0 18 38.085062561315375 40.0 37.0 41.0 33.0 41.0 19 38.05104414872559 40.0 37.0 41.0 34.0 41.0 20 37.92368916295365 40.0 36.0 41.0 33.0 41.0 21 37.79775409051575 40.0 36.0 41.0 33.0 41.0 22 37.79785079008507 40.0 36.0 41.0 33.0 41.0 23 37.66058037924414 39.0 35.0 41.0 33.0 41.0 24 37.466529964882355 39.0 35.0 41.0 33.0 41.0 25 37.32639327962788 39.0 35.0 41.0 33.0 41.0 26 37.30387137138999 39.0 35.0 41.0 33.0 41.0 27 37.17822805064413 39.0 35.0 41.0 32.0 41.0 28 37.136221592435284 39.0 35.0 41.0 32.0 41.0 29 36.983238741318736 39.0 35.0 41.0 32.0 41.0 30 36.840133296637084 39.0 35.0 40.0 32.0 41.0 31 36.79519196517493 39.0 35.0 41.0 31.0 41.0 32 36.51564012222164 39.0 35.0 41.0 31.0 41.0 33 36.30202994711277 39.0 35.0 41.0 30.0 41.0 34 36.04047083598844 39.0 35.0 41.0 29.0 41.0 35 35.8002856356509 39.0 35.0 41.0 27.0 41.0 36 35.663762373619036 39.0 35.0 41.0 26.0 41.0 37 35.578072504841174 39.0 35.0 41.0 26.0 41.0 38 35.474971754634346 39.0 35.0 40.0 26.0 41.0 39 35.39896258718458 38.0 35.0 40.0 25.0 41.0 40 35.30253906621276 38.0 35.0 40.0 25.0 41.0 41 35.26876116280819 38.0 35.0 40.0 25.0 41.0 42 35.12025293962558 38.0 35.0 40.0 24.0 41.0 43 35.119119819031305 38.0 35.0 40.0 24.0 41.0 44 34.8625155277193 38.0 34.0 40.0 23.0 41.0 45 34.7745288375472 38.0 34.0 40.0 23.0 41.0 46 34.76951203083146 38.0 34.0 40.0 23.0 41.0 47 34.6504748610047 38.0 34.0 40.0 23.0 41.0 48 34.61799207063532 37.0 34.0 40.0 23.0 41.0 49 34.58377447346258 37.0 34.0 40.0 24.0 41.0 50 33.99084081515257 36.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 3.0 11 2.0 12 2.0 13 4.0 14 25.0 15 28.0 16 64.0 17 128.0 18 308.0 19 721.0 20 1391.0 21 2516.0 22 4059.0 23 6463.0 24 9927.0 25 14864.0 26 20803.0 27 23655.0 28 23586.0 29 24298.0 30 27542.0 31 34063.0 32 43934.0 33 58791.0 34 89764.0 35 134147.0 36 126984.0 37 189761.0 38 201016.0 39 171084.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.48568309154308 22.104529754953372 26.998519752746642 18.411267400756902 2 35.72495336518634 23.904546780689508 27.94939885101076 12.421101003113396 3 28.556374609172575 24.25894656976874 34.64960456488087 12.535074256177822 4 25.706877984152843 25.856720991988812 34.307684805687586 14.128716218170759 5 22.163045391769625 29.89611821481024 32.928682827892125 15.012153565528008 6 19.85209098355033 38.569573687138046 30.808813380575618 10.769521948736005 7 82.57564675068785 3.583008315336469 11.661637462570242 2.1797074714054414 8 43.39769226891076 49.4614164585973 5.759161870946573 1.381729401545375 9 78.75469137547285 4.711665852572002 12.886829270711683 3.6468135012434573 10 41.448576078179535 28.059818188279845 18.137533235311377 12.35407249822924 11 35.423283768605366 21.918569044732227 27.20820078467155 15.449946401990855 12 31.903750042357714 20.076896819906555 30.65417671887617 17.36517641885956 13 23.401130475819734 26.692387099120364 31.76977568179395 18.136706743265947 14 18.252498278830316 29.957030678558233 33.51995523719082 18.270515805420633 15 17.76924837986897 22.892094025041057 41.271376183639916 18.067281411450058 16 21.368290640886727 20.28492486774061 39.06373328109903 19.283051210273626 17 20.810739107041464 20.951490702377733 31.93251196553859 26.30525822504221 18 23.097642596738826 22.714150287660555 33.9465904310404 20.24161668456022 19 26.27004966390701 25.119076841444937 29.28782006937574 19.323053425272306 20 27.85088099919582 24.273327531359172 28.354710550088313 19.52108091935669 21 24.61574318577971 26.028383389824068 30.750132445350282 18.605740979045947 22 22.742829561636885 22.248091423244094 31.66373675236563 23.34534226275339 23 21.61623825451492 26.275091265384116 30.31688531513728 21.791785164963677 24 21.84930901132542 24.107615876251 34.467858964091405 19.57521614833218 25 21.95394290427652 24.166710057499053 32.25533975848249 21.624007279741935 26 19.66513848287467 27.760049523403364 30.31143046763746 22.2633815260845 27 20.344349645806833 25.286028234621256 32.47948440120238 21.89013771836953 28 19.627698393216814 25.37066102007301 35.190378310203954 19.81126227650622 29 20.59626442125308 24.330107534880028 34.510588602839995 20.563039441026902 30 22.20436999404099 24.593262602144087 33.263494755494726 19.938872648320196 31 27.105633121834018 23.080534211398483 28.773080823483614 21.040751843283882 32 27.03827402013169 24.333000257039025 28.97598462063602 19.65274110219326 33 26.885372991727642 24.15910633068112 28.245861547705537 20.709659129885704 34 21.948901302799413 25.044031363720137 30.927910884321697 22.079156449158756 35 22.07775141268153 25.355618864846235 31.1677588759047 21.398870846567537 36 26.992899606837735 25.312889226097646 27.511688663752455 20.182522503312168 37 23.82900540773745 27.846831188173226 27.822201725219497 20.501961678869822 38 23.219880770257525 29.07888288029172 26.537419840602745 21.16381650884801 39 23.727760132172605 26.191367621182334 27.284651298873573 22.796220947771488 40 23.838758013873495 23.914712632848264 29.239966179945505 23.00656317333274 41 21.028850357829732 23.832972569555505 29.290630142330194 25.847546930284572 42 22.308094745742117 26.22211312527223 26.633623514690484 24.836168614295172 43 21.912370354391523 25.3253692559836 27.944522547942736 24.817737841682142 44 22.16676460597405 25.761343809946503 29.320466505170124 22.751425078909328 45 21.59590655019741 27.7812077197663 27.204233622853497 23.418652107182794 46 23.150124841623462 27.045464500926915 28.732004168825874 21.07240648862375 47 22.148747079383735 25.350411964960045 29.55014864459437 22.95069231106185 48 22.329170292900518 23.92487848500702 30.696079865579335 23.04987135651313 49 22.774649505385835 23.48535001524878 30.66599555512578 23.074004924239606 50 20.693955781022584 25.839447308239382 30.202746763663775 23.26385014707426 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 491.0 1 1061.0 2 1631.0 3 13879.5 4 26128.0 5 17913.0 6 9698.0 7 9599.5 8 9501.0 9 9529.5 10 9558.0 11 9476.0 12 9394.0 13 8979.5 14 8565.0 15 8120.0 16 7675.0 17 7240.5 18 6806.0 19 6504.0 20 6202.0 21 6460.0 22 6718.0 23 7142.0 24 7566.0 25 8586.5 26 9607.0 27 11074.0 28 12541.0 29 14797.5 30 17054.0 31 18807.0 32 20560.0 33 23420.0 34 26280.0 35 30046.0 36 33812.0 37 36936.0 38 40060.0 39 47465.0 40 54870.0 41 63410.0 42 71950.0 43 77436.0 44 82922.0 45 87384.0 46 91846.0 47 94962.0 48 98078.0 49 94970.0 50 91862.0 51 83081.0 52 74300.0 53 69234.5 54 64169.0 55 62279.5 56 60390.0 57 58842.0 58 57294.0 59 54531.5 60 51769.0 61 48336.0 62 44903.0 63 39093.0 64 33283.0 65 27693.0 66 22103.0 67 18542.0 68 14981.0 69 12718.0 70 10455.0 71 8710.5 72 6966.0 73 5528.5 74 4091.0 75 3051.5 76 2012.0 77 1525.0 78 1038.0 79 758.5 80 479.0 81 341.0 82 203.0 83 148.5 84 94.0 85 54.5 86 15.0 87 10.0 88 5.0 89 3.0 90 1.0 91 1.5 92 2.0 93 3.5 94 5.0 95 2.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1209933.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.94687152308922 #Duplication Level Percentage of deduplicated Percentage of total 1 70.00971607243238 25.166302690236815 2 7.73912331271607 5.563945428470984 3 4.092759093563549 4.413656559338518 4 2.874650550357315 4.133387760298885 5 2.3544900336732684 4.231827537142349 6 1.8792656583259337 4.053223270655761 7 1.6122230748289466 4.0568063016205205 8 1.3966351822269267 4.0163732368110105 9 1.2497518764974367 4.043220312617373 >10 6.733521062386662 36.08891900935134 >50 0.03426152384912645 0.8362565121261812 >100 0.02198277587374444 1.6876432225984845 >500 6.941928294308385E-4 0.17126803490085496 >1k 4.6279521962055905E-4 0.19098174265777706 >5k 4.6279521962055905E-4 1.3461883811731115 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8302 0.6861536961137518 No Hit CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7882 0.6514410302058048 No Hit CGGTCGGAGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCC 1223 0.10107997715575985 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03099345170352408 0.0 2 0.0 0.0 0.0 0.10529508658743914 0.0 3 0.0 0.0 0.0 0.19075436408462287 0.0 4 0.0 0.0 0.0 0.2751392019227511 0.0 5 0.0 0.0 0.0 0.4930025050973897 0.0 6 0.0 0.0 0.0 0.841782148267714 0.0 7 0.0 0.0 0.0 1.053694708715276 0.0 8 0.0 0.0 0.0 1.4863632944964722 0.0 9 0.0 0.0 0.0 1.959612639708149 0.0 10 0.0 0.0 0.0 2.5627038852564565 0.0 11 0.0 0.0 0.0 2.9614036479705903 0.0 12 0.0 0.0 0.0 3.2929096073914836 0.0 13 0.0 0.0 0.0 3.478539720794457 0.0 14 8.264920454273088E-5 0.0 0.0 3.5726771647686277 0.0 15 8.264920454273088E-5 0.0 0.0 3.6601200231748368 0.0 16 8.264920454273088E-5 0.0 0.0 3.7947555773749455 0.0 17 8.264920454273088E-5 0.0 0.0 3.9492269406653095 0.0 18 8.264920454273088E-5 0.0 0.0 4.197257203498045 0.0 19 8.264920454273088E-5 0.0 0.0 4.315693513607778 0.0 20 8.264920454273088E-5 0.0 0.0 4.458263391443989 0.0 21 8.264920454273088E-5 0.0 0.0 4.602238305757426 0.0 22 8.264920454273088E-5 0.0 0.0 4.765222537115691 0.0 23 8.264920454273088E-5 0.0 0.0 4.936306390519144 0.0 24 8.264920454273088E-5 0.0 0.0 5.075735598582732 0.0 25 8.264920454273088E-5 0.0 0.0 5.19615548960149 0.0 26 8.264920454273088E-5 0.0 0.0 5.312194972779484 0.0 27 8.264920454273088E-5 0.0 0.0 5.441127731866144 0.0 28 8.264920454273088E-5 0.0 0.0 5.574606197202655 0.0 29 8.264920454273088E-5 0.0 0.0 5.714861897311669 0.0 30 8.264920454273088E-5 0.0 0.0 5.902640890032754 0.0 31 8.264920454273088E-5 0.0 0.0 6.05595516445952 0.0 32 8.264920454273088E-5 0.0 0.0 6.200591272409299 0.0 33 8.264920454273088E-5 0.0 0.0 6.352665808767924 0.0 34 8.264920454273088E-5 0.0 0.0 6.509616648194569 0.0 35 8.264920454273088E-5 0.0 0.0 6.696899745688397 0.0 36 8.264920454273088E-5 0.0 0.0 6.851949653410561 0.0 37 8.264920454273088E-5 0.0 0.0 7.029810741586518 0.0 38 1.6529840908546177E-4 0.0 0.0 7.252798295442806 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTACGA 50 2.7284841E-11 44.0 2 ATTCGCG 30 2.5278277E-6 44.0 1 TATTCGC 20 7.856647E-4 44.0 44 CGTTTTT 9680 0.0 43.0 1 GTTTTTA 5425 0.0 40.71521 2 TAAGCGA 65 0.0 40.615387 2 CGTTAGA 55 7.8216544E-11 40.0 2 TCGTTAG 45 2.3510438E-8 39.11111 1 CGTAAGA 45 2.3510438E-8 39.11111 2 AGACTTA 690 0.0 38.898552 8 TCACGAC 295 0.0 38.77966 25 CGGTCTA 295 0.0 38.77966 31 TACGATG 40 4.1247768E-7 38.5 1 CGACGGT 305 0.0 38.229507 28 CACGACG 305 0.0 38.229507 26 TTCGCGA 35 7.2905277E-6 37.714287 2 TCGACGA 35 7.2905277E-6 37.714287 2 GAGCGAT 645 0.0 37.51938 7 GACCGAT 400 0.0 36.850002 9 TCGTTCA 145 0.0 36.41379 16 >>END_MODULE