##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546450_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1421466 Sequences flagged as poor quality 0 Sequence length 50 %GC 46 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.515153369830866 31.0 31.0 33.0 30.0 34.0 2 31.908159604239568 31.0 31.0 34.0 30.0 34.0 3 32.01023169038162 33.0 31.0 34.0 30.0 34.0 4 35.69847326633208 37.0 35.0 37.0 35.0 37.0 5 35.644073090738715 37.0 35.0 37.0 33.0 37.0 6 35.688557447030036 37.0 35.0 37.0 33.0 37.0 7 36.01221907523641 37.0 35.0 37.0 35.0 37.0 8 18.855540688275344 32.0 0.0 37.0 0.0 37.0 9 28.159252490034937 32.0 17.0 39.0 17.0 39.0 10 33.706334164869226 33.0 32.0 39.0 27.0 39.0 11 35.84301981194063 37.0 35.0 39.0 32.0 39.0 12 36.48129818089212 37.0 35.0 39.0 33.0 39.0 13 36.615762881419606 39.0 35.0 39.0 33.0 39.0 14 37.75582462049743 40.0 36.0 41.0 33.0 41.0 15 38.01321030541708 40.0 36.0 41.0 33.0 41.0 16 38.091935368134024 40.0 36.0 41.0 33.0 41.0 17 38.03994186283738 40.0 36.0 41.0 33.0 41.0 18 38.006499627848996 40.0 36.0 41.0 33.0 41.0 19 37.98731169088814 40.0 36.0 41.0 33.0 41.0 20 37.85272176752733 40.0 36.0 41.0 33.0 41.0 21 37.734726683578785 40.0 36.0 41.0 33.0 41.0 22 37.72815178132998 40.0 36.0 41.0 33.0 41.0 23 37.58641852847694 39.0 35.0 41.0 33.0 41.0 24 37.45068612263677 39.0 35.0 41.0 33.0 41.0 25 37.32671481414258 39.0 35.0 41.0 32.0 41.0 26 37.27995534187944 39.0 35.0 41.0 32.0 41.0 27 37.14006455307408 39.0 35.0 41.0 32.0 41.0 28 37.11927896973969 39.0 35.0 41.0 32.0 41.0 29 36.99859862986522 39.0 35.0 41.0 32.0 41.0 30 36.88885558993321 39.0 35.0 41.0 31.0 41.0 31 36.89638302991419 39.0 35.0 41.0 31.0 41.0 32 36.65159982722063 39.0 35.0 41.0 31.0 41.0 33 36.531410529692586 39.0 35.0 41.0 30.0 41.0 34 36.37913463987179 39.0 35.0 41.0 30.0 41.0 35 36.18116929986366 39.0 35.0 41.0 30.0 41.0 36 36.035693431992044 39.0 35.0 41.0 29.0 41.0 37 35.976665639558036 39.0 35.0 41.0 29.0 41.0 38 35.88848765992292 39.0 35.0 41.0 29.0 41.0 39 35.822472714788816 39.0 35.0 41.0 28.0 41.0 40 35.72146361573193 39.0 35.0 40.0 27.0 41.0 41 35.706577575545246 38.0 35.0 40.0 27.0 41.0 42 35.53206759781803 38.0 35.0 40.0 27.0 41.0 43 35.518907240834466 38.0 35.0 40.0 27.0 41.0 44 35.290053367438965 38.0 34.0 40.0 26.0 41.0 45 35.18907240834462 38.0 34.0 40.0 26.0 41.0 46 35.17747452278141 38.0 34.0 40.0 26.0 41.0 47 35.030874463406086 38.0 34.0 40.0 26.0 41.0 48 35.02900526639399 38.0 34.0 40.0 26.0 41.0 49 34.98858924518771 37.0 34.0 40.0 26.0 41.0 50 34.377475789079725 37.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 3.0 12 2.0 13 9.0 14 12.0 15 23.0 16 75.0 17 173.0 18 411.0 19 939.0 20 1776.0 21 3195.0 22 5015.0 23 7745.0 24 10882.0 25 15688.0 26 20515.0 27 23130.0 28 24387.0 29 26763.0 30 31970.0 31 40590.0 32 52405.0 33 69290.0 34 105335.0 35 159875.0 36 148047.0 37 222659.0 38 243591.0 39 206960.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.1087060823122 22.527798765499842 28.57247377003741 15.791021382150541 2 33.54494585167707 25.153468320733662 28.223467884564247 13.078117943025017 3 28.45752202303819 25.178653587212075 32.86635065488728 13.497473734862458 4 25.557276783264605 26.56693863940467 33.3107510133904 14.565033563940327 5 23.2996075882223 30.871790109647364 30.882975744759282 14.945626557371053 6 20.214553144429765 40.0926226867192 28.647888869659916 11.044935299191117 7 85.1460393706216 3.679862902102477 9.2435555968275 1.9305421304484243 8 45.09302368118548 49.46646631013334 4.186030478393434 1.2544795302877452 9 82.04684459564984 4.433591798889315 9.592209732768845 3.927353872691995 10 42.99307897621188 27.137546729925305 16.29704825862877 13.572326035234047 11 37.49642974225201 21.797426037625943 24.290274969644017 16.41586925047803 12 34.310282483014014 20.12668611138079 27.49724580116584 18.06578560443936 13 24.304767050355057 28.66920489128829 28.34531392238717 18.680714135969485 14 18.3303716022754 32.63595471154428 29.980105046480183 19.053568639700142 15 17.198371258967853 23.049654370910034 39.792580336075574 19.95939403404654 16 19.778243025158535 20.34906216539826 38.42856600157865 21.44412880786456 17 20.814848895436118 21.452641146534635 29.268234343980087 28.464275614049157 18 22.635996921488097 23.984745326303972 31.242323066467996 22.136934685739934 19 26.70763845213322 25.853942338402746 26.017857620231506 21.420561589232527 20 28.970021090901927 23.797895975000458 26.446218200083578 20.78586473401404 21 24.306736847733255 26.636936796237126 28.5051489096468 20.551177446382816 22 23.893642197562233 21.928276863463495 29.23094889360702 24.947132045367248 23 22.56874241100385 26.917351523005124 27.731722039077965 22.78218402691306 24 22.086845552408573 24.415497802972425 33.14767993043801 20.349976714180993 25 22.260117371783778 24.95015709134091 30.61557575066868 22.174149786206634 26 20.125068063534407 29.288635816825725 27.805308041134996 22.78098807850487 27 21.23779253249814 26.831806036866162 30.065369132993684 21.865032297642014 28 19.702124426472388 25.72956370395071 34.6137719790695 19.954539890507405 29 20.77882974337761 24.26811474913927 33.075641626320994 21.877413881162123 30 22.133065440889897 26.435736064035297 30.72504020497149 20.706158290103318 31 27.241875641063523 24.458974045105546 26.214626308332384 22.084524005498547 32 27.29899976503131 25.855349336530033 26.645871234345385 20.199779664093267 33 26.290182107767613 25.86744952042469 26.15292944045092 21.689438931356783 34 21.816912961688846 25.79843626228133 29.062601567677316 23.322049208352507 35 22.64999655285459 25.198632960619527 29.16038793752366 22.99098254900223 36 26.92635631101975 25.54025210592445 26.16502962434557 21.36836195871023 37 22.47869453085758 28.137781698612557 27.375751512874736 22.007772257655127 38 22.354034496780084 28.389986112928483 25.739553390654436 23.516425999636994 39 22.230781460829878 26.849815612895416 26.202948223875914 24.716454702398792 40 23.829764482583474 23.76750481545109 28.050407114908133 24.352323587057306 41 20.525077631121675 23.865220835391067 28.211789800107777 27.39791173337948 42 22.915426749566997 26.40070181066589 25.317805702000612 25.3660657377665 43 22.51682418010702 26.316000523403304 26.34181893903899 24.825356357450687 44 22.948631905370934 26.44481120195629 28.21024210216776 22.396314790505016 45 21.15372439439283 28.836919068060716 25.865901822484673 24.143454715061775 46 23.866627833518354 27.378424809316577 27.282748936661168 21.4721984205039 47 22.705572978882365 26.33408044933892 27.927646528302468 23.032700043476243 48 22.442745728705436 24.6945758815195 29.33183065933339 23.53084773044167 49 22.388787350524037 23.68716522238309 29.740915364841648 24.183132062251225 50 20.478857742640344 26.534859082102564 29.33084576064429 23.655437414612802 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 548.0 1 1134.5 2 1721.0 3 10719.0 4 19717.0 5 13513.5 6 7310.0 7 7429.5 8 7549.0 9 7750.0 10 7951.0 11 7784.0 12 7617.0 13 7240.5 14 6864.0 15 6614.0 16 6364.0 17 6152.5 18 5941.0 19 5844.5 20 5748.0 21 5852.0 22 5956.0 23 6150.5 24 6345.0 25 7515.0 26 8685.0 27 10945.5 28 13206.0 29 15844.0 30 18482.0 31 21222.5 32 23963.0 33 26442.0 34 28921.0 35 33094.0 36 37267.0 37 42371.5 38 47476.0 39 57283.5 40 67091.0 41 78319.5 42 89548.0 43 96588.0 44 103628.0 45 109846.5 46 116065.0 47 117512.5 48 118960.0 49 116834.5 50 114709.0 51 104700.5 52 94692.0 53 87750.5 54 80809.0 55 77889.5 56 74970.0 57 72650.5 58 70331.0 59 65769.5 60 61208.0 61 56202.0 62 51196.0 63 44154.0 64 37112.0 65 30915.5 66 24719.0 67 21089.0 68 17459.0 69 15429.5 70 13400.0 71 11285.0 72 9170.0 73 6845.5 74 4521.0 75 3293.5 76 2066.0 77 1613.5 78 1161.0 79 877.0 80 593.0 81 422.0 82 251.0 83 176.0 84 101.0 85 70.5 86 40.0 87 27.0 88 14.0 89 10.0 90 6.0 91 7.0 92 8.0 93 5.5 94 3.0 95 2.0 96 1.0 97 2.0 98 3.0 99 1.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1421466.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.083860373494996 #Duplication Level Percentage of deduplicated Percentage of total 1 72.48538445930404 21.806401851928065 2 6.419435312924773 3.8624279126142405 3 3.0839212607625295 2.7832876983489774 4 2.1619191960483977 2.601555009307942 5 1.664825953216515 2.5042195761368173 6 1.3634573906784901 2.4610837059828907 7 1.220904499468185 2.5710664343960867 8 1.0579658349763206 2.546215716748454 9 0.9517490473373006 2.5769056905632004 >10 9.484117111788885 51.36462226905515 >50 0.07676241104087003 1.4833931126259785 >100 0.02556960353988022 1.6376179349789042 >500 0.0023458346552134527 0.4568110168937352 >1k 0.0011729173276067264 0.4789705502329339 >5k 4.6916693104269056E-4 0.865421520186602 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6414 0.4512242994204575 No Hit CGTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5849 0.4114766023246423 No Hit CGGTCGGAGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCC 1804 0.12691123108115143 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.026099815261145888 0.0 2 0.0 0.0 0.0 0.09623867190632769 0.0 3 0.0 0.0 0.0 0.1705281730270017 0.0 4 0.0 0.0 0.0 0.2617016516751016 0.0 5 0.0 0.0 0.0 0.4902684974526299 0.0 6 0.0 0.0 0.0 0.7724419718797354 0.0 7 0.0 0.0 0.0 0.9519749329213643 0.0 8 0.0 0.0 0.0 1.3336231749475542 0.0 9 0.0 0.0 0.0 1.663001436545088 0.0 10 0.0 0.0 0.0 2.2144743525346366 0.0 11 0.0 0.0 0.0 2.5940120973698986 0.0 12 0.0 0.0 0.0 2.960535109527769 0.0 13 0.0 0.0 0.0 3.113616505776431 0.0 14 0.0 0.0 0.0 3.1893130050243905 0.0 15 0.0 0.0 0.0 3.2802754339533973 0.0 16 0.0 0.0 0.0 3.4314573827302235 0.0 17 0.0 0.0 0.0 3.5920662189598627 0.0 18 7.034990636427464E-5 0.0 0.0 3.819648166048291 0.0 19 7.034990636427464E-5 0.0 0.0 3.962528825874133 0.0 20 7.034990636427464E-5 0.0 0.0 4.099781493190832 0.0 21 7.034990636427464E-5 0.0 0.0 4.2511744916867515 0.0 22 7.034990636427464E-5 0.0 0.0 4.407280933909077 0.0 23 7.034990636427464E-5 0.0 0.0 4.5803417035651925 0.0 24 7.034990636427464E-5 0.0 0.0 4.719282768634635 0.0 25 7.034990636427464E-5 0.0 0.0 4.835782213573874 0.0 26 7.034990636427464E-5 0.0 0.0 4.9476385646930705 0.0 27 7.034990636427464E-5 0.0 0.0 5.073002097834208 0.0 28 7.034990636427464E-5 0.0 0.0 5.19498883546986 0.0 29 7.034990636427464E-5 0.0 0.0 5.329919955876539 0.0 30 7.034990636427464E-5 0.0 0.0 5.503965624221754 0.0 31 7.034990636427464E-5 0.0 0.0 5.644524737137575 0.0 32 7.034990636427464E-5 0.0 0.0 5.7900083434988945 0.0 33 7.034990636427464E-5 0.0 0.0 5.9295122078192515 0.0 34 7.034990636427464E-5 0.0 0.0 6.0768249117460424 0.0 35 7.034990636427464E-5 0.0 0.0 6.252488627937637 0.0 36 7.034990636427464E-5 0.0 0.0 6.4019821789617195 0.0 37 7.034990636427464E-5 0.0 0.0 6.563998013318645 0.0 38 1.4069981272854927E-4 0.0 0.0 6.7381843814765885 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTAAGA 55 1.8189894E-12 44.000004 2 AATGCGC 20 7.8571116E-4 44.0 10 GTACGTC 20 7.8571116E-4 44.0 12 CGTTTTT 7210 0.0 42.56588 1 CGGTCTA 340 0.0 40.11765 31 GCGCGAC 1120 0.0 39.482143 9 GTTTTTA 4215 0.0 39.1981 2 TCACGAC 355 0.0 39.04225 25 CGACGGT 345 0.0 38.898552 28 GAGCGAT 720 0.0 38.194447 7 CGTTGAT 110 0.0 38.000004 25 CGATGAA 870 0.0 37.931034 19 CCGTAGA 35 7.2914227E-6 37.714287 2 TCAGACG 1150 0.0 37.49565 22 CTCACGA 370 0.0 37.45946 24 CGCGACC 1180 0.0 37.288136 10 ACCCGCT 1080 0.0 37.27778 34 GCGTAAG 65 1.0913936E-11 37.23077 1 ACGTGGC 1125 0.0 37.15556 26 CGAATAT 160 0.0 37.125 14 >>END_MODULE