SRR1546438_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546438_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	365580
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1748	0.4781443186169922	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCG	1573	0.4302751791673505	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1204	0.32933967941353465	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1192	0.3260572241369878	No Hit
GAATCTATCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTC	1038	0.2839323814213031	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCG	1010	0.2762733191093605	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGC	815	0.22293342086547405	No Hit
GAATCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTC	776	0.21226544121669674	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	621	0.16986706056129985	No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGC	444	0.1214508452322337	No Hit
CATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	377	0.10312380327151376	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTCGAT	30	2.161425E-6	45.000004	14
CCTGTCA	30	2.161425E-6	45.000004	1
GACCCAC	30	2.161425E-6	45.000004	12
CTACGGG	30	2.161425E-6	45.000004	3
TCATGCA	30	2.161425E-6	45.000004	24
AGTCTAG	30	2.161425E-6	45.000004	2
CACAGCG	30	2.161425E-6	45.000004	45
GGACGAT	30	2.161425E-6	45.000004	8
TCGTAAG	30	2.161425E-6	45.000004	2
GTTATAA	60	0.0	45.000004	1
CGAAGGA	30	2.161425E-6	45.000004	4
TCACGAC	50	2.1827873E-11	45.0	25
GTTGATA	25	3.8855687E-5	45.0	1
CTTGTGC	20	7.0269685E-4	45.0	27
CTTAACA	20	7.0269685E-4	45.0	1
ATGGGTA	35	1.2088822E-7	45.0	5
AAGTATA	20	7.0269685E-4	45.0	1
TTAGGCT	35	1.2088822E-7	45.0	5
AGGTAAC	20	7.0269685E-4	45.0	7
GGTACTT	25	3.8855687E-5	45.0	9