##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546436_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1023118 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.778059813237572 31.0 30.0 31.0 30.0 33.0 2 30.87273510973319 31.0 30.0 31.0 28.0 34.0 3 30.80461784466699 31.0 30.0 33.0 28.0 34.0 4 34.80224372946229 35.0 35.0 37.0 32.0 37.0 5 32.731096510861896 35.0 35.0 37.0 28.0 37.0 6 33.83131075789889 35.0 35.0 37.0 29.0 37.0 7 18.734433369366975 30.0 0.0 35.0 0.0 37.0 8 26.249857787664766 30.0 17.0 35.0 17.0 37.0 9 32.70483951997717 32.0 32.0 37.0 27.0 39.0 10 35.03575247429915 37.0 34.0 37.0 30.0 39.0 11 35.949322561034016 37.0 35.0 39.0 32.0 39.0 12 35.65886144120228 37.0 35.0 39.0 30.0 39.0 13 35.175627835694414 37.0 34.0 39.0 29.0 39.0 14 36.407579575376445 38.0 35.0 40.0 30.0 41.0 15 36.72030107964086 38.0 35.0 40.0 31.0 41.0 16 37.10263332284253 38.0 35.0 40.0 32.0 41.0 17 36.12651131150073 38.0 34.0 40.0 29.0 41.0 18 36.450293123569324 38.0 35.0 40.0 30.0 41.0 19 36.49056218344316 38.0 35.0 40.0 30.0 41.0 20 35.692835039555554 38.0 34.0 40.0 27.0 41.0 21 35.94270651088144 38.0 34.0 40.0 30.0 41.0 22 35.55500734030679 38.0 34.0 40.0 28.0 41.0 23 35.485387804730244 37.0 34.0 40.0 27.0 41.0 24 35.66922681450234 37.0 34.0 40.0 29.0 41.0 25 35.98795544599938 37.0 34.0 40.0 30.0 41.0 26 35.471565352188115 37.0 34.0 40.0 29.0 41.0 27 34.749820646298865 37.0 33.0 40.0 25.0 41.0 28 34.609070507996144 36.0 33.0 40.0 24.0 41.0 29 34.54759959261786 36.0 33.0 40.0 24.0 41.0 30 34.30469603701626 36.0 33.0 40.0 23.0 41.0 31 34.646352620127885 37.0 33.0 40.0 24.0 41.0 32 33.42367938009105 36.0 32.0 40.0 18.0 41.0 33 32.863918922353044 36.0 31.0 40.0 15.0 41.0 34 32.13192026726145 36.0 31.0 40.0 10.0 41.0 35 31.431552372258135 36.0 29.0 40.0 7.0 41.0 36 31.455116614114893 36.0 28.0 40.0 9.0 41.0 37 31.309369007289483 36.0 28.0 40.0 8.0 41.0 38 31.491838673544986 35.0 28.0 40.0 10.0 41.0 39 31.29032623802924 35.0 27.0 40.0 10.0 41.0 40 30.958418286062802 35.0 26.0 40.0 8.0 41.0 41 31.222464075502533 35.0 27.0 40.0 10.0 41.0 42 30.712197420043434 35.0 26.0 40.0 8.0 41.0 43 30.372158441157325 35.0 24.0 40.0 7.0 41.0 44 30.556585848357667 35.0 25.0 40.0 8.0 41.0 45 30.675116653211067 35.0 26.0 39.0 9.0 40.0 46 30.44637079984909 35.0 25.0 39.0 8.0 40.0 47 30.433254033259114 35.0 26.0 39.0 8.0 40.0 48 30.60929433359593 35.0 26.0 39.0 8.0 40.0 49 30.473426330100732 35.0 26.0 39.0 8.0 40.0 50 30.098089369945598 35.0 24.0 39.0 7.0 40.0 51 30.113874450454396 35.0 24.0 39.0 8.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 5.0 13 6.0 14 16.0 15 52.0 16 177.0 17 487.0 18 1179.0 19 2665.0 20 5611.0 21 10757.0 22 18291.0 23 26992.0 24 34873.0 25 40202.0 26 41840.0 27 38757.0 28 33640.0 29 31535.0 30 33125.0 31 39741.0 32 50211.0 33 70829.0 34 84907.0 35 86696.0 36 92885.0 37 131803.0 38 120935.0 39 24900.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.610201364847455 17.380888616953275 21.472303292484344 16.536606725714922 2 27.611771076259046 40.189205937145076 21.990132125522177 10.208890861073698 3 21.348270678455467 38.7647368143264 30.153706610576688 9.733285896641442 4 19.251640573228112 19.64221135782969 49.804910088572385 11.30123798036981 5 34.33240349597993 28.043783805973504 25.609655973211304 12.014156724835258 6 15.941269726463613 48.254062581246735 27.6819487097285 8.122718982561151 7 28.043588325100334 46.8427884173673 24.19505863448791 0.9185646230444582 8 61.95248250934887 21.87020460982995 13.605859734654263 2.5714531461669132 9 59.0526214962497 4.542584530816582 13.411063044536405 22.99373092839731 10 52.77035493462142 18.164669177944283 18.76323161160296 10.301744275831332 11 48.896803692242734 14.510349734830196 24.627462325948716 11.965384246978354 12 32.61891590217355 15.541120379076508 26.22952582204594 25.610437896703996 13 29.353310175365895 29.736648167660036 29.046502944919357 11.86353871205472 14 11.918175616106842 46.58778361831187 26.082230984109362 15.411809781471932 15 9.722827669926636 18.919909531451896 46.661186686188685 24.69607611243278 16 10.74255364483862 16.215529391526687 40.26778924816101 32.774127715473675 17 11.39839197433727 29.26456185894491 31.624211479027835 27.712834687689984 18 14.358167875064265 20.862598449054754 34.07788739910743 30.70134627677355 19 20.536047650417643 21.408283306519873 26.17058833878399 31.88508070427849 20 34.91816193244572 19.397273823742715 30.309602606932923 15.37496163687864 21 16.433490565115658 38.36927900789547 27.90557882863951 17.291651598349357 22 16.452647690686707 19.73682410044589 37.9418600787006 25.868668130166807 23 27.20546408136696 27.33858655599843 27.618710647256716 17.837238715377893 24 16.432122199003437 30.75959957697939 35.12146204054664 17.686816183470526 25 13.312638424893317 38.24006615072748 32.179377158841895 16.26791826553731 26 12.910729749647645 25.777574043267737 42.095437671900996 19.216258535183623 27 27.71430079423879 26.988578052580447 28.02149898643167 17.275622166749095 28 10.72896772415303 35.54018207088527 37.4230538412969 16.3077963636648 29 15.264710424408523 21.12170834644684 44.74185773293012 18.871723496214514 30 15.523038398307918 38.90176890642135 29.94014375663413 15.6350489386366 31 21.80843265390698 20.999044098530177 24.318700286770444 32.8738229607924 32 35.806720241457974 22.63785799878411 25.546711132049282 16.00871062770863 33 32.010286203546414 22.909380931622746 23.395053161023462 21.68527970380738 34 16.70804345148849 23.992149488133332 27.315031110780964 31.98477594959721 35 25.905125313013748 20.72869405093059 31.90932033255206 21.456860303503603 36 21.337323749557726 31.614437435369137 26.068449582550596 20.979789232522545 37 18.615448071483446 26.56282071080755 32.05436714044714 22.76736407726186 38 15.972937627917796 30.568419283015253 24.044636102580544 29.414006986486406 39 17.65983982297252 28.709689400440613 26.073923046999465 27.5565477295874 40 18.44977803146851 24.821379352137292 28.680562750337696 28.048279866056507 41 13.602047857627369 22.168997124476356 27.953373902130547 36.275581115765725 42 17.304162374232494 23.372866081918215 30.721285325837293 28.601686218012002 43 19.68404426468892 26.143025535666464 26.740806045832443 27.432124153812172 44 19.45640678787784 25.32053976178701 29.634998113609573 25.588055336725578 45 15.881257098399207 29.346468344804805 26.633878008206285 28.138396548589707 46 24.73136041004068 32.11995097339701 23.330739953749223 19.817948662813087 47 17.1096589054244 29.355069503224456 32.62321648138338 20.912055109967763 48 20.69614648554712 23.744377481385335 28.441489642445934 27.117986390621613 49 20.249179469034853 21.711376400376107 34.96967114252706 23.06977298806198 50 18.02558453668101 28.23916693871088 29.762353902482413 23.972894622125697 51 17.940843578160095 29.07680248026132 26.293741288883588 26.688612652695 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1246.0 1 1491.5 2 1737.0 3 10183.5 4 18630.0 5 13882.5 6 9135.0 7 9262.5 8 9390.0 9 9529.0 10 9668.0 11 9635.0 12 9602.0 13 9187.5 14 8773.0 15 8255.0 16 7737.0 17 7222.0 18 6707.0 19 6193.0 20 5679.0 21 5535.0 22 5391.0 23 5139.0 24 4887.0 25 5717.0 26 7740.5 27 8934.0 28 10642.5 29 12351.0 30 13893.0 31 15435.0 32 18131.5 33 20828.0 34 22078.0 35 23328.0 36 25431.0 37 27534.0 38 34582.0 39 41630.0 40 52343.0 41 63056.0 42 69149.5 43 75243.0 44 81728.5 45 88214.0 46 109765.0 47 131316.0 48 102741.5 49 74167.0 50 70678.5 51 67190.0 52 65331.5 53 63473.0 54 60766.0 55 58059.0 56 52701.0 57 47343.0 58 41839.5 59 36336.0 60 30530.0 61 24724.0 62 20069.5 63 15415.0 64 12034.0 65 8653.0 66 6795.5 67 4938.0 68 4164.0 69 3390.0 70 3052.5 71 2715.0 72 2227.0 73 1739.0 74 1280.0 75 666.5 76 512.0 77 404.5 78 297.0 79 219.5 80 142.0 81 106.5 82 71.0 83 67.0 84 63.0 85 48.5 86 34.0 87 28.5 88 23.0 89 17.5 90 12.0 91 7.5 92 3.0 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1023118.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.276653695908756 #Duplication Level Percentage of deduplicated Percentage of total 1 79.61247198270665 22.511743001302342 2 5.991581104965453 3.3884372799211686 3 2.371559150949534 2.011792704922901 4 1.4850295621581138 1.6796666662932793 5 1.0084208641557937 1.4257383777731214 6 0.7920944398621411 1.343866810226195 7 0.6635568695885683 1.3134217466228062 8 0.5722798871367326 1.2945728148559308 9 0.488969170813665 1.2443770719966292 >10 6.407170616928711 40.82270207074175 >50 0.5134478623296098 9.150212036120372 >100 0.08032574571188865 4.08161390588376 >500 0.004600152838125731 0.9738759596481267 >1k 0.006369442391251012 3.5057733482165223 >5k 0.001769289553125281 3.716598031970617 >10k+ 3.538579106250562E-4 1.5356081735045517 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACCTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCG 15347 1.500022480300415 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGC 8829 0.8629503146264653 No Hit GAATGAAACCTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCG 8673 0.8477028065188961 No Hit GAATCTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCGTCTTC 7299 0.7134074466483827 No Hit GAATCTATCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCGTCTTC 7132 0.6970847937383567 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5211 0.5093254150547639 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4917 0.4805897266981912 No Hit GAATGAAACGGCTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGC 3975 0.38851823543325403 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGCCACTTT 2760 0.26976360498007074 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 2531 0.24738104500165184 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGCCACTTTCGTA 2022 0.1976311627788779 No Hit GAACTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCGTCTTCT 1890 0.18472942514939625 No Hit GAATGACTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCGTCT 1835 0.17935370113711224 No Hit GAATGATCTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCGTC 1760 0.17202316839308857 No Hit GAATGAATGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCGTCT 1676 0.16381297171978207 No Hit GAATGATACGGCGACCACCGATGAATGATACGGCTATACACATCTGACGCA 1549 0.15139993627323536 No Hit GAATGAACTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCGTC 1548 0.15130219583664836 No Hit GAATAATACCTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCG 1463 0.1429942587267549 No Hit GAATGATACGGCGACCACCGATGAATGATACGGCGCTGACCCAGCCACTTT 1281 0.12520549926792413 No Hit GCTGTCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCGTCTTCTGC 1274 0.12452131621181525 TruSeq Adapter, Index 13 (95% over 22bp) GAACTGACTCTTATACACATCTGACGCAGCCACTTTCGTATGCCGTCTTCT 1258 0.12295746922642355 No Hit GAATGATACGGCGACCACCGATGAATGATACGGGCAGCCACTTTCGTATGC 1223 0.11953655394587917 No Hit GAATCTATCTCTTATACACATCTGACGCAGCCACTTTCGTATGCCGTCCTC 1065 0.10409356496513598 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0246305900199195 0.0 2 0.0 0.0 0.0 0.19401476662515957 0.0 3 0.0 0.0 0.0 0.21991598232070983 0.0 4 0.0 0.0 0.0 0.4593800519588161 0.0 5 0.0 0.0 0.0 1.2995568448605146 0.0 6 0.0 0.0 0.0 1.4147928195965667 0.0 7 0.0 0.0 0.0 1.668722473849546 0.0 8 0.0 0.0 0.0 2.2912313144720353 0.0 9 0.0 0.0 0.0 2.4222034994985915 0.0 10 0.0 0.0 0.0 5.275344583909187 0.0 11 0.0 0.0 0.0 5.467600022675781 0.0 12 0.0 0.0 0.0 7.09282800224412 0.0 13 0.0 0.0 0.0 7.241100244546573 0.0 14 0.0 0.0 0.0 7.340795489865294 0.0 15 0.0 0.0 0.0 7.671744608148816 0.0 16 0.0 0.0 0.0 7.862142978620257 0.0 17 0.0 0.0 0.0 7.996145117181009 0.0 18 0.0 0.0 0.0 8.1583942419154 0.0 19 0.0 0.0 0.0 8.583760621941947 0.0 20 0.0 0.0 0.0 8.701440107592672 0.0 21 0.0 0.0 0.0 8.79673703326498 0.0 22 0.0 0.0 0.0 8.927220516108601 0.0 23 0.0 0.0 0.0 9.049982504461852 0.0 24 0.0 0.0 0.0 9.174210599363905 0.0 25 0.0 0.0 0.0 9.252402948633492 0.0 26 0.0 0.0 0.0 9.364022527215825 0.0 27 0.0 0.0 0.0 9.589802935731754 0.0 28 0.0 0.0 0.0 9.669852353296491 0.0 29 0.0 0.0 0.0 9.753909128761297 0.0 30 0.0 0.0 0.0 9.860837166387455 0.0 31 0.0 0.0 0.0 9.95847986253785 0.0 32 0.0 0.0 0.0 10.067167228022575 0.0 33 0.0 0.0 0.0 10.155426842260619 0.0 34 0.0 0.0 0.0 10.271444740489367 0.0 35 0.0 0.0 0.0 10.392056439237702 0.0 36 0.0 0.0 0.0 10.485496296614858 0.0 37 0.0 0.0 0.0 10.589101159397059 0.0 38 0.0 0.0 0.0 10.68332294026691 0.0 39 0.0 0.0 0.0 10.780281453361196 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGCACT 20 7.032924E-4 45.0 22 ATCCGGC 40 6.8139343E-9 45.0 28 ATCCGAT 20 7.032924E-4 45.0 26 ACGTCAA 20 7.032924E-4 45.0 10 CGCGTTC 20 7.032924E-4 45.0 24 CGGTATA 50 2.1827873E-11 45.0 31 CACGTAA 20 7.032924E-4 45.0 1 TGCGTTA 35 1.2117562E-7 45.0 1 TACCGTT 20 7.032924E-4 45.0 13 AATCGCG 25 3.8905047E-5 45.0 21 GTACGAG 45 3.8380676E-10 45.0 2 CTTACGT 25 3.8905047E-5 45.0 41 TACCGCT 45 3.8380676E-10 45.0 29 ACGGTAC 40 6.8139343E-9 45.0 30 CATTGAC 65 0.0 44.999996 26 TGCGCAA 30 2.1652668E-6 44.999996 1 CGTTTTA 3280 0.0 44.79421 1 CGTTATT 780 0.0 44.711536 1 GATGAAT 11170 0.0 44.536705 20 CCGATGA 10890 0.0 44.380165 18 >>END_MODULE