SRR1546435_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546435_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2657020
Sequences flagged as poor quality	0
Sequence length	50
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	20830	0.7839609788409572	No Hit
GAATCTATCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTT	18374	0.6915265974663344	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCC	16522	0.6218244499476858	No Hit
GAATAATACCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCC	9345	0.3517098102385379	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9161	0.34478475886519483	No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATG	8846	0.33292937200322165	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA	5800	0.21828966285537935	No Hit
GAATATGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTT	5459	0.20545573612543375	No Hit
GAATAATACGGCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATG	4769	0.17948679347539725	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGCGA	30	2.5289773E-6	44.0	30
GTATTCG	30	2.5289773E-6	44.0	12
ACGTTGC	20	7.8583485E-4	44.0	39
ACGCAAC	20	7.8583485E-4	44.0	29
ATTCGTT	20	7.8583485E-4	44.0	30
CGCGATA	25	4.4444234E-5	44.0	20
TAACGTT	20	7.8583485E-4	44.0	35
ACGGGTA	60	0.0	44.0	5
TATTCGA	70	0.0	44.0	13
CGTACAC	25	4.4444234E-5	44.0	34
ACGTCAC	20	7.8583485E-4	44.0	21
TCGACTA	30	2.5289773E-6	44.0	1
AGTACGC	20	7.8583485E-4	44.0	28
CGTTATT	7655	0.0	43.626385	1
CGTTTTA	13290	0.0	43.30474	1
GAATCTA	2245	0.0	42.43207	1
GTTTTAT	13995	0.0	42.28653	2
TAATACG	3115	0.0	42.23435	4
AGGCGAT	1640	0.0	41.853657	7
ATAATAC	4270	0.0	41.733025	3