SRR1546434_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546434_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1116309
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCG	10041	0.8994821326353187	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCG	6142	0.5502060809327883	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5719	0.5123133469317187	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGC	5557	0.49780123603769205	No Hit
GAATCTATCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTC	5424	0.48588697215555904	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5186	0.46456671047174214	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTC	4974	0.445575553005485	No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGC	2870	0.25709727324602777	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGTCAAAGT	2447	0.21920453924495817	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2296	0.20567781859682222	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTA	1288	0.11538023970065636	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCT	1125	0.1007785478751851	No Hit
GAACTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCT	1123	0.10059938601229587	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTAG	20	7.0331985E-4	45.000004	2
CTCGTAG	20	7.0331985E-4	45.000004	2
CGAGTCA	20	7.0331985E-4	45.000004	34
ACGTTGC	20	7.0331985E-4	45.000004	39
TTAGATC	30	2.165445E-6	45.000004	13
CTAAACG	20	7.0331985E-4	45.000004	45
GACGGTC	60	0.0	45.000004	29
CGTACTG	20	7.0331985E-4	45.000004	13
ATGCGTA	20	7.0331985E-4	45.000004	11
CGGTATA	20	7.0331985E-4	45.000004	31
TAAATCG	20	7.0331985E-4	45.000004	1
CGGTAAG	30	2.165445E-6	45.000004	2
TACGTAA	20	7.0331985E-4	45.000004	1
TATTTCG	25	3.890734E-5	45.0	20
CGTATTA	25	3.890734E-5	45.0	14
CGACGGT	50	2.1827873E-11	45.0	28
TGTTGCG	25	3.890734E-5	45.0	1
CCCGTAA	25	3.890734E-5	45.0	41
TCGGAAT	25	3.890734E-5	45.0	24
ACTCGAT	35	1.2118835E-7	45.0	20