##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546434_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1116309 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.881951144351607 31.0 30.0 31.0 30.0 33.0 2 30.992539700029294 31.0 31.0 33.0 28.0 34.0 3 30.912825212373992 31.0 30.0 33.0 28.0 34.0 4 34.9299405451358 35.0 35.0 37.0 32.0 37.0 5 32.81802529586342 35.0 35.0 37.0 28.0 37.0 6 33.937316639030946 35.0 35.0 37.0 29.0 37.0 7 17.559526081040286 25.0 0.0 35.0 0.0 37.0 8 25.76597429564753 23.0 17.0 35.0 17.0 37.0 9 32.69540960432998 32.0 32.0 37.0 27.0 39.0 10 35.25605455120401 37.0 34.0 37.0 32.0 39.0 11 36.21481238617623 37.0 35.0 39.0 32.0 39.0 12 35.923776481243095 37.0 35.0 39.0 31.0 39.0 13 35.52616255893305 37.0 35.0 39.0 30.0 39.0 14 36.73319484121332 38.0 35.0 40.0 31.0 41.0 15 37.04384897013282 39.0 35.0 40.0 31.0 41.0 16 37.28974593952033 39.0 35.0 40.0 32.0 41.0 17 36.65833564004232 38.0 35.0 40.0 30.0 41.0 18 36.77922958607339 38.0 35.0 40.0 31.0 41.0 19 36.77161610270991 38.0 35.0 40.0 31.0 41.0 20 36.20986035228597 38.0 34.0 40.0 29.0 41.0 21 36.41370803245338 38.0 35.0 40.0 30.0 41.0 22 36.24357861488172 38.0 35.0 40.0 30.0 41.0 23 36.069806836637525 38.0 35.0 40.0 30.0 41.0 24 36.163874876938195 38.0 34.0 40.0 30.0 41.0 25 36.282551694916016 38.0 35.0 40.0 30.0 41.0 26 35.90977139842105 38.0 34.0 40.0 30.0 41.0 27 35.353177301266946 37.0 34.0 40.0 27.0 41.0 28 35.25953297877201 37.0 34.0 40.0 27.0 41.0 29 35.444432500320254 37.0 34.0 40.0 27.0 41.0 30 35.04220605585013 37.0 34.0 40.0 25.0 41.0 31 35.06790951250953 37.0 34.0 40.0 25.0 41.0 32 34.22743792265403 37.0 33.0 40.0 22.0 41.0 33 33.796171131828196 37.0 33.0 40.0 20.0 41.0 34 33.06489690578505 37.0 32.0 40.0 13.0 41.0 35 32.62279082225441 37.0 32.0 40.0 10.0 41.0 36 32.38841754388794 37.0 31.0 40.0 11.0 41.0 37 32.254882832620716 36.0 31.0 40.0 11.0 41.0 38 32.22897602724694 36.0 30.0 40.0 10.0 41.0 39 32.13670139719379 36.0 30.0 40.0 11.0 41.0 40 31.978099253880423 36.0 30.0 40.0 10.0 41.0 41 31.825350328627646 36.0 30.0 40.0 10.0 41.0 42 31.68627145351332 35.0 30.0 40.0 9.0 41.0 43 31.455947233248143 35.0 29.0 40.0 8.0 41.0 44 31.558810329398042 35.0 29.0 40.0 10.0 41.0 45 31.612507827133886 35.0 29.0 40.0 10.0 41.0 46 31.474724292288247 35.0 29.0 40.0 10.0 41.0 47 31.485642416212716 35.0 29.0 40.0 10.0 40.0 48 31.66758397540466 35.0 29.0 40.0 10.0 41.0 49 31.564290890783823 35.0 29.0 39.0 10.0 40.0 50 31.17498559986527 35.0 28.0 39.0 9.0 40.0 51 31.147438567636737 35.0 28.0 39.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 2.0 12 1.0 13 9.0 14 30.0 15 58.0 16 170.0 17 492.0 18 1209.0 19 2949.0 20 6492.0 21 12206.0 22 18091.0 23 23315.0 24 28852.0 25 33831.0 26 36339.0 27 34281.0 28 31665.0 29 30983.0 30 33508.0 31 41187.0 32 53988.0 33 77842.0 34 96738.0 35 100294.0 36 110988.0 37 163564.0 38 147555.0 39 29669.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.86503736868555 18.841736472607494 23.977321691395485 17.315904467311473 2 29.955505151351463 34.76340332291507 24.574109856679467 10.706981669053999 3 23.38465424895795 33.824505580444125 31.41567433389859 11.375165836699336 4 21.60315826531901 22.091105598897794 43.939536454512144 12.366199681271047 5 30.39803495268783 29.688912299372305 27.49821062089439 12.414842127045468 6 17.163168979198414 45.7722727309374 28.44131866714324 8.623239622720948 7 30.891894627741962 50.15161572647 18.15832354661657 0.798166099171466 8 70.48872668768236 15.555549583493459 12.02534423712431 1.9303794916998789 9 66.92179315942091 4.770184599425428 12.093157002227878 16.214865238925782 10 52.17757807202128 20.277539641801688 17.25095829201413 10.293923994162906 11 48.40675834379191 15.349423860239414 23.513202885580963 12.730614910387716 12 34.24687967220545 16.9091174576215 26.689832295538242 22.1541705746348 13 27.176525496076803 32.20174700732503 28.725111057959758 11.896616438638405 14 13.21892056769228 44.34282980787578 28.570136046560584 13.86811357787136 15 11.77057606809584 18.59942005304983 47.998448458267376 21.631555420586952 16 12.958777542777133 16.429949055324286 42.289455697302444 28.321817704596132 17 13.283508419263843 25.56165004492484 31.524515165603788 29.630326370207534 18 17.770975599050086 20.140928721348658 33.88371857612901 28.204377103472243 19 23.948566212401765 20.79710904418042 26.59156201374351 28.662762729674313 20 34.39522569467773 19.723033676159556 29.03936096546745 16.84237966369527 21 18.985603448507536 33.84699039423672 28.627736585479468 18.539669571776273 22 18.924688415125203 20.627353179092886 35.56999002964233 24.87796837613958 23 25.834871885830896 26.14070118578279 27.93993419384776 20.084492734538557 24 18.11335391903138 27.90257894543536 36.48201349267989 17.50205364285337 25 14.784616087481153 33.43966589895808 33.89034756505591 17.88537044850485 26 15.018153575757252 27.45610758311543 38.2624345051415 19.263304335985826 27 25.83236361975045 27.714011084744456 29.104038397970456 17.349586897534643 28 12.793948628919056 32.69121721673838 38.30812078017825 16.206713374164323 29 15.66985485201678 20.424631531233736 45.09423466083315 18.81127895591633 30 17.308021345344347 34.93862362482073 31.61526064915718 16.13809438067775 31 24.92535668887378 21.780886833305114 26.610553171209762 26.683203306611343 32 35.30187430182862 22.69407484845146 26.192299802294883 15.811751047425041 33 31.9356020600031 24.372552760929096 24.101122538651932 19.59072264041587 34 18.67081605541118 25.185947618446146 29.638388654037545 26.504847672105125 35 25.48120636848758 22.869474312220003 29.608647784797938 22.040671534494482 36 26.615659284302108 28.32145938087035 27.728791938432817 17.334089396394724 37 20.727773403242292 28.91439556610222 29.766220643209003 20.591610387446487 38 18.74570571409887 31.215371371188443 24.192674250588322 25.84624866412436 39 20.517616538073238 31.89439483153858 25.16229825254477 22.42569037784341 40 21.165286672417764 26.92883422063246 25.41007910892056 26.495799998029216 41 17.893611894197754 24.931627354074905 24.97202835415642 32.20273239757092 42 19.4921836158268 25.985278269726393 26.531811532469952 27.990726581976855 43 22.582725750665812 25.166239813528335 25.863985688550393 26.387048747255466 44 20.493429686583195 26.993959557792692 28.594412478982072 23.91819827664204 45 16.803680701311198 31.80535138568264 26.105047975067837 25.285919937938328 46 24.22116098678771 31.276465566433664 24.32480612446912 20.177567322309503 47 19.482956779888006 28.72072159231897 30.5273002367624 21.26902139103062 48 21.685035236659385 24.711258262721163 30.071602038503677 23.532104462115775 49 20.79173418829374 23.033138673969304 33.54393810315961 22.631189034577343 50 19.66614978469223 29.876226027022984 28.29915372894064 22.158470459344144 51 18.32019628973698 29.181436322738598 28.13754972861457 24.360817658909852 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 510.0 1 873.5 2 1237.0 3 10516.0 4 19795.0 5 14644.0 6 9493.0 7 9686.5 8 9880.0 9 10069.5 10 10259.0 11 10103.0 12 9947.0 13 9390.0 14 8833.0 15 8197.5 16 7562.0 17 7097.0 18 6632.0 19 6225.5 20 5819.0 21 5776.5 22 5734.0 23 6115.5 24 6497.0 25 7810.5 26 10804.5 27 12485.0 28 12993.5 29 13502.0 30 14563.5 31 15625.0 32 18436.5 33 21248.0 34 23337.0 35 25426.0 36 27641.5 37 29857.0 38 38454.0 39 47051.0 40 60865.0 41 74679.0 42 85911.0 43 97143.0 44 110925.5 45 124708.0 46 103602.5 47 82497.0 48 78065.5 49 73634.0 50 72892.0 51 72150.0 52 70431.5 53 68713.0 54 64082.5 55 59452.0 56 55642.5 57 51833.0 58 46569.0 59 41305.0 60 35952.5 61 30600.0 62 26305.5 63 22011.0 64 18452.0 65 14893.0 66 12125.0 67 9357.0 68 7736.5 69 6116.0 70 5306.5 71 4497.0 72 3717.0 73 2937.0 74 2301.0 75 1268.5 76 872.0 77 645.5 78 419.0 79 307.0 80 195.0 81 136.0 82 77.0 83 47.5 84 18.0 85 16.5 86 15.0 87 8.5 88 2.0 89 3.0 90 4.0 91 2.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1116309.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.367499189383146 #Duplication Level Percentage of deduplicated Percentage of total 1 78.80313206416703 19.990383887586106 2 5.392281883404883 2.7357741261239763 3 2.271495838603018 1.7286650653334776 4 1.4061022534340468 1.42677191096712 5 1.0529598910037992 1.335547959074592 6 0.8051868028110306 1.2255345340566497 7 0.7241291065020272 1.2858541165539243 8 0.595140439075054 1.2077779684644452 9 0.5583333130990233 1.2747167880700576 >10 7.439166897272016 43.8772445586857 >50 0.8466505708718739 13.684560120919977 >100 0.09228891957899392 3.6135898302561515 >500 0.006566010088624019 1.106442692898327 >1k 0.004377340059082679 1.9844161201977604 >5k 0.00182389169128445 2.593574959986143 >10k+ 3.6477833825688996E-4 0.9291453608256336 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATGATACCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCG 10041 0.8994821326353187 No Hit GAATGAAACCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCG 6142 0.5502060809327883 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5719 0.5123133469317187 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGC 5557 0.49780123603769205 No Hit GAATCTATCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTC 5424 0.48588697215555904 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5186 0.46456671047174214 No Hit GAATCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTC 4974 0.445575553005485 No Hit GAATGAAACGGCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGC 2870 0.25709727324602777 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGTCAAAGT 2447 0.21920453924495817 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 2296 0.20567781859682222 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTA 1288 0.11538023970065636 No Hit GAATGACTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCT 1125 0.1007785478751851 No Hit GAACTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCT 1123 0.10059938601229587 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.018901576534812493 0.0 2 0.0 0.0 0.0 0.1098262219510906 0.0 3 0.0 0.0 0.0 0.13025067432046145 0.0 4 0.0 0.0 0.0 0.2625617100641489 0.0 5 0.0 0.0 0.0 0.8000472987318028 0.0 6 0.0 0.0 0.0 0.8842533742897352 0.0 7 0.0 0.0 0.0 1.0307181972016708 0.0 8 0.0 0.0 0.0 1.4126912888814835 0.0 9 0.0 0.0 0.0 1.5121261227849996 0.0 10 0.0 0.0 0.0 3.2750788536149043 0.0 11 0.0 0.0 0.0 3.4135709736282696 0.0 12 0.0 0.0 0.0 4.415085787178998 0.0 13 0.0 0.0 0.0 4.520343381626414 0.0 14 0.0 0.0 0.0 4.589141536975873 0.0 15 0.0 0.0 0.0 4.796163069544365 0.0 16 0.0 0.0 0.0 4.947644424617199 0.0 17 0.0 0.0 0.0 5.070280719764868 0.0 18 0.0 0.0 0.0 5.250517553831421 0.0 19 0.0 0.0 0.0 5.587610598857485 0.0 20 0.0 0.0 0.0 5.671547931621084 0.0 21 0.0 0.0 0.0 5.733000450592085 0.0 22 0.0 0.0 0.0 5.821954315516582 0.0 23 0.0 0.0 0.0 5.897291878861498 0.0 24 0.0 0.0 0.0 5.972181537549191 0.0 25 0.0 0.0 0.0 6.017957393517387 0.0 26 0.0 0.0 0.0 6.093115794999413 0.0 27 0.0 0.0 0.0 6.207510644454179 0.0 28 0.0 0.0 0.0 6.257944708857494 0.0 29 0.0 0.0 0.0 6.3090954207123655 0.0 30 0.0 0.0 0.0 6.372518720175148 0.0 31 0.0 0.0 0.0 6.433612915420372 0.0 32 0.0 0.0 0.0 6.4999923856208275 0.0 33 0.0 0.0 0.0 6.553113877967481 0.0 34 0.0 0.0 0.0 6.638126181908414 0.0 35 0.0 0.0 0.0 6.722063514672013 0.0 36 0.0 0.0 0.0 6.790413765364249 0.0 37 0.0 0.0 0.0 6.860555634685379 0.0 38 0.0 0.0 0.0 6.924874743462608 0.0 39 0.0 0.0 0.0 6.986327262433609 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGTTAG 20 7.0331985E-4 45.000004 2 CTCGTAG 20 7.0331985E-4 45.000004 2 CGAGTCA 20 7.0331985E-4 45.000004 34 ACGTTGC 20 7.0331985E-4 45.000004 39 TTAGATC 30 2.165445E-6 45.000004 13 CTAAACG 20 7.0331985E-4 45.000004 45 GACGGTC 60 0.0 45.000004 29 CGTACTG 20 7.0331985E-4 45.000004 13 ATGCGTA 20 7.0331985E-4 45.000004 11 CGGTATA 20 7.0331985E-4 45.000004 31 TAAATCG 20 7.0331985E-4 45.000004 1 CGGTAAG 30 2.165445E-6 45.000004 2 TACGTAA 20 7.0331985E-4 45.000004 1 TATTTCG 25 3.890734E-5 45.0 20 CGTATTA 25 3.890734E-5 45.0 14 CGACGGT 50 2.1827873E-11 45.0 28 TGTTGCG 25 3.890734E-5 45.0 1 CCCGTAA 25 3.890734E-5 45.0 41 TCGGAAT 25 3.890734E-5 45.0 24 ACTCGAT 35 1.2118835E-7 45.0 20 >>END_MODULE