SRR1546432_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546432_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	540866
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCG	2087	0.3858626720851376	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1909	0.3529524873073922	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1835	0.3392707250964194	No Hit
GAATCTATCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTC	1791	0.33113562324124646	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGC	1667	0.3082094271039407	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1613	0.2982254384635011	No Hit
GAATCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTC	1390	0.2569952631520561	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCG	1205	0.2227908576246242	No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGC	872	0.16122292767524674	No Hit
GAATGATACGGCGACCACCGATGAATGATACGGGCGAGCCCCATCGTATGC	579	0.10705054486693563	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGAGCTCCAT	567	0.10483188072461572	No Hit
AAGGAAAGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	542	0.10020966376144923	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAC	35	1.2103374E-7	45.000004	25
TTTAGTC	20	7.02997E-4	45.000004	33
GTGTTCG	20	7.02997E-4	45.000004	15
TTAGGTT	25	3.8880564E-5	45.000004	5
TGTCACG	20	7.02997E-4	45.000004	14
AAGTACG	25	3.8880564E-5	45.000004	1
AGCGTAA	30	2.1633623E-6	45.000004	1
TACCCTC	25	3.8880564E-5	45.000004	22
CTCACGT	30	2.1633623E-6	45.000004	45
AAATCGA	30	2.1633623E-6	45.000004	40
CAAACGA	80	0.0	45.000004	15
CGAACGT	20	7.02997E-4	45.000004	39
GTTTCGA	30	2.1633623E-6	45.000004	23
CGGCCTA	20	7.02997E-4	45.000004	28
TAGGTTA	25	3.8880564E-5	45.000004	6
CCGGCAT	25	3.8880564E-5	45.000004	18
CAGTTAT	20	7.02997E-4	45.000004	30
CCGGATT	20	7.02997E-4	45.000004	17
CCTACGT	20	7.02997E-4	45.000004	21
GTTAGAC	20	7.02997E-4	45.000004	9