##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546432_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 540866 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.898854799525207 31.0 31.0 31.0 30.0 33.0 2 31.011559240181487 31.0 31.0 33.0 30.0 34.0 3 30.974844046399664 31.0 30.0 34.0 28.0 34.0 4 34.964534653685014 35.0 35.0 37.0 32.0 37.0 5 32.80933909692974 35.0 35.0 37.0 28.0 37.0 6 33.93147655796445 35.0 35.0 37.0 28.0 37.0 7 16.65319506125362 0.0 0.0 35.0 0.0 37.0 8 25.38467014010864 17.0 17.0 35.0 17.0 37.0 9 32.64218678933414 32.0 32.0 37.0 27.0 39.0 10 35.306029589584114 37.0 34.0 37.0 32.0 39.0 11 36.25710989413274 37.0 35.0 39.0 32.0 39.0 12 35.967385637107895 37.0 35.0 39.0 31.0 39.0 13 35.497467025104186 37.0 35.0 39.0 30.0 39.0 14 36.59583519762751 38.0 35.0 40.0 31.0 41.0 15 36.96902005302607 39.0 35.0 40.0 31.0 41.0 16 37.194963262619574 39.0 35.0 40.0 32.0 41.0 17 36.75402225320135 38.0 35.0 40.0 31.0 41.0 18 36.86700032910185 38.0 35.0 40.0 31.0 41.0 19 36.8689638468678 38.0 35.0 40.0 31.0 41.0 20 36.44018666360984 38.0 35.0 40.0 30.0 41.0 21 36.482193371371096 38.0 35.0 40.0 30.0 41.0 22 36.338120717515984 38.0 35.0 40.0 30.0 41.0 23 36.25996087755562 38.0 35.0 40.0 30.0 41.0 24 36.28625759430247 38.0 34.0 40.0 30.0 41.0 25 36.2954021883424 38.0 35.0 40.0 31.0 41.0 26 35.946317572189784 38.0 34.0 40.0 30.0 41.0 27 35.52767968406223 37.0 34.0 40.0 29.0 41.0 28 35.44428564561278 37.0 34.0 40.0 27.0 41.0 29 35.425186645120974 37.0 34.0 40.0 27.0 41.0 30 35.22805833607585 37.0 34.0 40.0 27.0 41.0 31 35.27093771839975 37.0 34.0 40.0 27.0 41.0 32 34.61878542929302 37.0 33.0 40.0 24.0 41.0 33 34.15387730047738 37.0 33.0 40.0 22.0 41.0 34 33.719830789881414 37.0 33.0 40.0 18.0 41.0 35 33.09583149985394 37.0 33.0 40.0 12.0 41.0 36 33.01234131929166 37.0 32.0 40.0 13.0 41.0 37 32.76681839864218 36.0 32.0 40.0 12.0 41.0 38 32.775500770985786 36.0 31.0 40.0 12.0 41.0 39 32.65812234453635 36.0 31.0 40.0 11.0 41.0 40 32.56324302137683 36.0 31.0 40.0 12.0 41.0 41 32.61903318012225 36.0 31.0 40.0 14.0 41.0 42 32.47944962338176 36.0 31.0 40.0 12.0 41.0 43 32.20107938010524 36.0 31.0 40.0 11.0 41.0 44 32.17627101722053 35.0 30.0 40.0 11.0 41.0 45 32.19445481875363 35.0 30.0 40.0 12.0 41.0 46 32.03780603698513 35.0 30.0 40.0 11.0 41.0 47 31.999036729984876 35.0 30.0 40.0 11.0 41.0 48 32.14122721709259 35.0 30.0 40.0 12.0 41.0 49 32.04913416631846 35.0 30.0 40.0 11.0 41.0 50 31.788041770050253 35.0 30.0 39.0 10.0 40.0 51 31.6966919717638 35.0 29.0 39.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 4.0 13 3.0 14 13.0 15 20.0 16 85.0 17 218.0 18 514.0 19 1057.0 20 2174.0 21 4200.0 22 7233.0 23 10172.0 24 12936.0 25 15069.0 26 16085.0 27 15721.0 28 14630.0 29 14864.0 30 16694.0 31 20545.0 32 26557.0 33 40021.0 34 49407.0 35 49956.0 36 54775.0 37 81257.0 38 73160.0 39 13496.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.233495912111316 21.79430764736552 26.247906135715688 16.724290304807475 2 28.217895005417237 32.79962134798638 27.952025085695904 11.030458560900481 3 25.60911575140608 30.57411632456098 32.063209741414695 11.753558182618246 4 22.604304947990812 24.756409166041127 39.671933528822294 12.967352357145762 5 27.735335554462658 32.25956151801 27.522713574157 12.482389353370335 6 18.349092011699756 44.91463689712425 27.92225800845311 8.814013082722893 7 32.158982076891505 53.19912880454678 13.867760221570594 0.7741288969911216 8 75.60560286651408 12.641208728224736 9.819252827872338 1.9339355773888542 9 71.85291735845847 5.329970824566529 10.628880351140578 12.18823146583442 10 56.74621810208074 19.431985001830398 14.76983208410216 9.051964811986704 11 52.55922908816601 17.076133460043707 19.330666005997788 11.033971445792488 12 39.45099155798294 18.141092248357264 23.654657530700764 18.753258662959034 13 26.917203151982193 36.273309840145245 24.04181442353559 12.76767258433697 14 14.200929620275632 46.58344210950587 26.121257390924924 13.094370879293576 15 12.69186822614104 20.102206461489537 48.261306867135296 18.944618445234124 16 13.249122703220392 16.01857021887122 45.14648729999667 25.585819777911716 17 13.660684901620733 23.807375579163786 29.29376222576387 33.23817729345161 18 18.327090258955085 21.753262360732602 33.56857336197876 26.35107401833356 19 27.675616511298546 20.989672118417502 25.180358905902757 26.154352464381198 20 36.59168814456816 20.17283393668672 25.243405945280344 17.99207197346478 21 20.470689597793168 33.48759212078408 26.177648437875554 19.8640698435472 22 19.60725946907367 22.37005099229754 31.573624520676102 26.449065017952687 23 25.092721672281122 28.607825228429963 24.903210776791294 21.396242322497624 24 19.531824888234794 27.061416321232983 36.80523456826645 16.601524222265773 25 15.811310010242833 30.511439062540447 34.70545384623918 18.97179708097754 26 15.202656480533072 30.99769628706556 34.6043197390851 19.195327493316274 27 23.66427174198415 31.42756246464004 27.69484493386532 17.21332085951049 28 14.162472775142088 32.84935640251005 37.615046980213215 15.37312384213465 29 15.994719579341279 22.032629153986385 41.96085536898234 20.011795897690003 30 17.067073914795902 35.150296006774326 30.889721298805988 16.892908779623788 31 28.588227028506136 22.605229391383446 23.609359804461732 25.19718377564868 32 36.10136336911546 24.1875067022146 24.53934985745083 15.171780071219118 33 33.221537312384214 24.106710349698446 23.729907222861115 18.941845115056225 34 20.817725647387707 23.568314517828814 27.101352275794742 28.512607558988734 35 23.084645734803075 24.22448443791993 30.030913387049658 22.65995644022734 36 30.121693728206246 27.876035838821444 23.782970273598266 18.21930015937404 37 19.50538580720548 32.1332825505763 28.23398032044906 20.12735132176916 38 20.95546771289007 31.12915213749801 22.951340997585355 24.964039152026565 39 21.36222280564872 31.011008271919476 24.049025081998128 23.577743840433673 40 22.442342465601463 24.1292667684787 25.461389697263275 27.96700106865656 41 16.089012805389874 24.02461977643261 24.850147726054143 35.036219692123375 42 21.118354638672056 24.664519492813376 23.945117644666148 30.272008223848424 43 21.795232090758155 26.34182958440723 24.773049147108527 27.08988917772609 44 19.993676807194387 28.43476942532901 28.57288126818842 22.99867249928818 45 18.339662689094897 34.068697237393366 22.78531096426841 24.806329109243325 46 23.608250472390573 32.75321428967619 23.28635928307566 20.35217595485758 47 21.037188508798852 27.352800878590998 28.301094910754237 23.308915701855913 48 22.876830860139112 22.651266672336586 30.322113055729144 24.149789411795158 49 21.18306567615639 22.58193341788909 32.678149486194364 23.556851419760164 50 19.28093095147412 32.0951954827998 26.14030092481317 22.483572640912904 51 19.49503204120799 31.764059859558557 24.410112671160693 24.330795428072758 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 200.0 1 328.5 2 457.0 3 3604.0 4 6751.0 5 5225.0 6 3699.0 7 3793.0 8 3887.0 9 4032.0 10 4177.0 11 4111.5 12 4046.0 13 3891.0 14 3736.0 15 3545.0 16 3354.0 17 3192.5 18 3031.0 19 2895.0 20 2759.0 21 2676.5 22 2594.0 23 2488.5 24 2383.0 25 3120.5 26 4451.5 27 5045.0 28 6022.5 29 7000.0 30 7651.0 31 8302.0 32 9006.5 33 9711.0 34 9684.0 35 9657.0 36 11777.5 37 13898.0 38 20465.0 39 27032.0 40 34322.0 41 41612.0 42 43979.5 43 46347.0 44 44826.0 45 43305.0 46 42418.5 47 41532.0 48 43200.0 49 44868.0 50 39630.0 51 34392.0 52 32484.0 53 30576.0 54 29673.0 55 28770.0 56 29019.0 57 29268.0 58 26605.0 59 23942.0 60 20525.5 61 17109.0 62 14404.5 63 11700.0 64 9503.0 65 7306.0 66 6131.0 67 4956.0 68 4244.0 69 3532.0 70 2988.5 71 2445.0 72 2029.0 73 1613.0 74 1281.5 75 716.0 76 482.0 77 383.0 78 284.0 79 230.0 80 176.0 81 126.0 82 76.0 83 52.0 84 28.0 85 22.0 86 16.0 87 8.5 88 1.0 89 1.5 90 2.0 91 1.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 540866.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.584882729378542 #Duplication Level Percentage of deduplicated Percentage of total 1 76.12214466126521 22.520647229123202 2 6.283795001038096 3.7181067640233443 3 2.8606261470199312 2.53893867276536 4 1.8843096938870898 2.229883252779229 5 1.3684873762572207 2.02432692716024 6 1.1417708340098223 2.0267493736803197 7 0.9128578524108812 1.8904754758517783 8 0.7573849830525632 1.7925716723681948 9 0.6996634876376605 1.8629516008609361 >10 7.522984152528661 46.66982014017659 >50 0.38742591393208065 7.225082710899584 >100 0.051075442029631206 2.5415308291350502 >500 0.002491484977055181 0.4717458615563899 >1k 0.004982969954110362 2.487169489619763 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATGATACCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCG 2087 0.3858626720851376 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1909 0.3529524873073922 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 1835 0.3392707250964194 No Hit GAATCTATCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTC 1791 0.33113562324124646 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGC 1667 0.3082094271039407 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1613 0.2982254384635011 No Hit GAATCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTC 1390 0.2569952631520561 No Hit GAATGAAACCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCG 1205 0.2227908576246242 No Hit GAATGAAACGGCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGC 872 0.16122292767524674 No Hit GAATGATACGGCGACCACCGATGAATGATACGGGCGAGCCCCATCGTATGC 579 0.10705054486693563 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGAGCTCCAT 567 0.10483188072461572 No Hit AAGGAAAGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 542 0.10020966376144923 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.010723543354546228 0.0 2 0.0 0.0 0.0 0.06027370919969086 0.0 3 0.0 0.0 0.0 0.07136702991129042 0.0 4 0.0 0.0 0.0 0.16473581256725325 0.0 5 0.0 0.0 0.0 0.48607233584658677 0.0 6 0.0 0.0 0.0 0.5628011374351503 0.0 7 0.0 0.0 0.0 0.6535814785917399 0.0 8 0.0 0.0 0.0 1.0525712468522703 0.0 9 0.0 0.0 0.0 1.2006670783521243 0.0 10 0.0 0.0 0.0 2.1036633842763273 0.0 11 0.0 0.0 0.0 2.2756098553061204 0.0 12 0.0 0.0 0.0 2.988910377061971 0.0 13 0.0 0.0 0.0 3.089859595537527 0.0 14 0.0 0.0 0.0 3.1432924236317312 0.0 15 0.0 0.0 0.0 3.273638941993026 0.0 16 0.0 0.0 0.0 3.377176601967955 0.0 17 0.0 0.0 0.0 3.4637045035184317 0.0 18 0.0 0.0 0.0 3.592571912451513 0.0 19 0.0 0.0 0.0 3.7815281419057585 0.0 20 0.0 0.0 0.0 3.858811609529902 0.0 21 0.0 0.0 0.0 3.930918194155299 0.0 22 0.0 0.0 0.0 4.011899435349976 0.0 23 0.0 0.0 0.0 4.0869642388318 0.0 24 0.0 0.0 0.0 4.158516157421617 0.0 25 0.0 0.0 0.0 4.2235969722630005 0.0 26 0.0 0.0 0.0 4.285349790890905 0.0 27 0.0 0.0 0.0 4.392215447079313 0.0 28 0.0 0.0 0.0 4.4460180525305715 0.0 29 0.0 0.0 0.0 4.500190435338882 0.0 30 0.0 0.0 0.0 4.576549459570392 0.0 31 0.0 0.0 0.0 4.644033827232623 0.0 32 0.0 0.0 0.0 4.722611515606453 0.0 33 0.0 0.0 0.0 4.779372339914138 0.0 34 0.0 0.0 0.0 4.860353581108814 0.0 35 0.0 0.0 0.0 4.949285035480138 0.0 36 0.0 0.0 0.0 5.021021842748481 0.0 37 0.0 0.0 0.0 5.105146191478111 0.0 38 0.0 0.0 0.0 5.1839087685304674 0.0 39 0.0 0.0 0.0 5.257679351262605 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCACGAC 35 1.2103374E-7 45.000004 25 TTTAGTC 20 7.02997E-4 45.000004 33 GTGTTCG 20 7.02997E-4 45.000004 15 TTAGGTT 25 3.8880564E-5 45.000004 5 TGTCACG 20 7.02997E-4 45.000004 14 AAGTACG 25 3.8880564E-5 45.000004 1 AGCGTAA 30 2.1633623E-6 45.000004 1 TACCCTC 25 3.8880564E-5 45.000004 22 CTCACGT 30 2.1633623E-6 45.000004 45 AAATCGA 30 2.1633623E-6 45.000004 40 CAAACGA 80 0.0 45.000004 15 CGAACGT 20 7.02997E-4 45.000004 39 GTTTCGA 30 2.1633623E-6 45.000004 23 CGGCCTA 20 7.02997E-4 45.000004 28 TAGGTTA 25 3.8880564E-5 45.000004 6 CCGGCAT 25 3.8880564E-5 45.000004 18 CAGTTAT 20 7.02997E-4 45.000004 30 CCGGATT 20 7.02997E-4 45.000004 17 CCTACGT 20 7.02997E-4 45.000004 21 GTTAGAC 20 7.02997E-4 45.000004 9 >>END_MODULE