SRR1546430_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546430_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	489895
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1585	0.3235387174802764	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1130	0.23066167239918756	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	975	0.199022239459476	No Hit
AAGGAAAGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	548	0.11186070484491574	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AATCCGG	20	7.029317E-4	45.000004	19
CAACGTC	20	7.029317E-4	45.000004	23
TTAGCGA	20	7.029317E-4	45.000004	1
TTCGTGC	20	7.029317E-4	45.000004	31
GTTAGCG	20	7.029317E-4	45.000004	24
CCATCGC	20	7.029317E-4	45.000004	10
CATAGTA	20	7.029317E-4	45.000004	1
CGCTAAG	20	7.029317E-4	45.000004	2
TACCTAC	20	7.029317E-4	45.000004	43
CGCGTAT	20	7.029317E-4	45.000004	14
ATACCTA	20	7.029317E-4	45.000004	42
ATCGCGT	20	7.029317E-4	45.000004	12
ATCGCGA	20	7.029317E-4	45.000004	1
TCGTTAG	25	3.887518E-5	45.0	2
CGAACGT	25	3.887518E-5	45.0	38
CTCGTAG	25	3.887518E-5	45.0	1
ATCTACG	25	3.887518E-5	45.0	23
ATAGGCC	25	3.887518E-5	45.0	5
CTATCTC	50	2.1827873E-11	45.0	5
TTTGTCA	45	3.8380676E-10	45.0	40