SRR1546428_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546428_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	386141
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1455	0.3768053638437773	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	991	0.25664200382761737	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	865	0.22401143623702224	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTAA	25	3.885977E-5	45.000004	1
TTAGGAC	65	0.0	45.000004	5
TCACCGG	25	3.885977E-5	45.000004	17
CATGATA	25	3.885977E-5	45.000004	1
CGGTTTA	25	3.885977E-5	45.000004	1
TTGTAGC	25	3.885977E-5	45.000004	34
ATCACGG	25	3.885977E-5	45.000004	2
ATCGTCC	25	3.885977E-5	45.000004	19
TTGCGAA	25	3.885977E-5	45.000004	1
GCGATAA	65	0.0	45.000004	9
TTCATAG	25	3.885977E-5	45.000004	2
ATTGCGA	25	3.885977E-5	45.000004	1
TTACCGG	25	3.885977E-5	45.000004	2
CCGCAAT	50	2.1827873E-11	45.000004	33
GCGTAAA	25	3.885977E-5	45.000004	21
CTTGTAT	20	7.0274604E-4	45.0	18
GTGCATC	20	7.0274604E-4	45.0	15
CGGGTTC	20	7.0274604E-4	45.0	6
CTTCGCA	40	6.7939254E-9	45.0	24
AACGTCA	20	7.0274604E-4	45.0	34