##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546428_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 386141 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.114507394967124 31.0 31.0 33.0 30.0 33.0 2 31.259078937486567 31.0 31.0 33.0 30.0 34.0 3 31.202180032682364 31.0 31.0 34.0 28.0 34.0 4 35.16670853392932 35.0 35.0 37.0 33.0 37.0 5 32.92866336390075 35.0 35.0 37.0 28.0 37.0 6 34.10762648876965 35.0 35.0 37.0 29.0 37.0 7 15.203060540061792 0.0 0.0 35.0 0.0 37.0 8 24.887152620415858 17.0 17.0 35.0 17.0 37.0 9 32.81725587285474 32.0 32.0 37.0 27.0 39.0 10 35.699262704556105 37.0 35.0 37.0 32.0 39.0 11 36.62700930489122 37.0 35.0 39.0 33.0 39.0 12 36.2839972963244 37.0 35.0 39.0 32.0 39.0 13 35.707759600767595 37.0 35.0 39.0 31.0 39.0 14 36.695823546321165 39.0 35.0 40.0 31.0 41.0 15 37.18968718680482 39.0 35.0 41.0 32.0 41.0 16 37.346798190298365 39.0 35.0 41.0 32.0 41.0 17 37.351141163461016 39.0 35.0 41.0 32.0 41.0 18 37.24293457571198 39.0 35.0 41.0 32.0 41.0 19 37.14742283259224 39.0 35.0 41.0 32.0 41.0 20 37.2300066555999 39.0 35.0 41.0 32.0 41.0 21 37.04929287488249 39.0 35.0 40.0 32.0 41.0 22 37.08284797522148 39.0 35.0 41.0 32.0 41.0 23 37.10689618559024 39.0 35.0 41.0 32.0 41.0 24 36.93116763047695 38.0 35.0 41.0 32.0 41.0 25 36.692083979686174 38.0 35.0 40.0 31.0 41.0 26 36.55737929927151 38.0 35.0 40.0 31.0 41.0 27 36.46300185683468 38.0 35.0 40.0 31.0 41.0 28 36.41571343110418 38.0 35.0 40.0 31.0 41.0 29 36.510487101861756 38.0 35.0 40.0 31.0 41.0 30 36.2970365747227 38.0 35.0 40.0 31.0 41.0 31 36.13741612519779 38.0 35.0 40.0 30.0 41.0 32 35.98774540906042 38.0 34.0 40.0 30.0 41.0 33 35.79467085857239 38.0 34.0 40.0 30.0 41.0 34 35.651114489266874 38.0 34.0 40.0 29.0 41.0 35 35.47527457586737 38.0 34.0 40.0 29.0 41.0 36 35.24321167656374 38.0 34.0 40.0 27.0 41.0 37 35.038050867429256 38.0 34.0 40.0 26.0 41.0 38 35.02110886955801 38.0 34.0 40.0 27.0 41.0 39 34.933892023898004 37.0 34.0 40.0 26.0 41.0 40 34.740146733965055 37.0 34.0 40.0 24.0 41.0 41 34.677130892601404 37.0 34.0 40.0 24.0 41.0 42 34.64643744124555 37.0 34.0 40.0 24.0 41.0 43 34.55715917242665 37.0 33.0 40.0 24.0 41.0 44 34.195239562750395 36.0 33.0 40.0 23.0 41.0 45 34.135854519463095 36.0 33.0 40.0 23.0 41.0 46 34.18577669814912 36.0 33.0 40.0 23.0 41.0 47 34.18141041743819 36.0 33.0 40.0 23.0 41.0 48 34.1934474712605 36.0 33.0 40.0 23.0 41.0 49 34.13356779000417 36.0 33.0 40.0 24.0 41.0 50 34.000248613848306 36.0 33.0 40.0 24.0 41.0 51 33.79217177145136 35.0 33.0 40.0 23.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 2.0 15 12.0 16 33.0 17 105.0 18 221.0 19 397.0 20 680.0 21 1175.0 22 1773.0 23 2732.0 24 4113.0 25 5464.0 26 6664.0 27 7018.0 28 7757.0 29 8832.0 30 11173.0 31 14523.0 32 20018.0 33 31737.0 34 40621.0 35 39683.0 36 41958.0 37 64625.0 38 63370.0 39 11454.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.45022932037779 24.438482316045178 30.919534574158142 16.191753789418893 2 30.7695893468966 25.55361901481583 30.87654509622133 12.80024654206624 3 28.219225619657067 23.62660271766013 34.410487360834516 13.743684301848289 4 27.672275153376617 26.87256727464838 30.836663291388376 14.618494280586624 5 21.1280335421517 36.37168806213275 28.81123734594358 13.689041049771975 6 21.260109649066013 39.51509940669341 28.589815637293114 10.634975306947462 7 37.282754227082854 57.6478540222354 4.319665614374024 0.7497261363077218 8 88.34337716015652 3.420512196322069 6.824450136090185 1.4116605074312232 9 84.375914497554 4.759660331329747 8.256828464213848 2.607596706902401 10 59.467655597307726 19.076451348082696 12.389256774079934 9.066636280529652 11 56.074076567885825 16.25934567942798 17.770969671700236 9.89560808098596 12 48.96190769692936 20.276272138933706 20.206867439614026 10.554952724522908 13 20.373904868946834 46.528858629360776 20.88900168591266 12.20823481577973 14 13.346938035588035 48.07803367163808 26.032718618328538 12.542309674445345 15 11.601979587767163 21.836065064315886 54.51324775146902 12.04870759644793 16 13.36454818317661 15.12141937789564 52.55955726017181 18.95447517875595 17 14.369880432277329 16.747250356734973 29.299142023250575 39.583727187737125 18 21.15703849112112 22.441543374052483 34.924030341248404 21.477387793577993 19 31.62238664114922 21.375611499426377 26.060169730746026 20.941832128678385 20 34.05155111733797 20.91489896177821 24.40947736707576 20.624072553808066 21 22.119640235043676 28.180897651376053 27.531393972668017 22.168068140912258 22 22.47132524129787 24.790426295058023 24.938299740250322 27.799948723393786 23 20.312787297904134 30.76440989172349 24.20592477877252 24.716878031599858 24 19.82306981128655 21.720563213955522 41.8805565842529 16.575810390505023 25 15.6875338283166 23.94254948321986 39.217539706998224 21.15237698146532 26 15.28146454274475 36.464400309731424 28.445826783480644 19.808308364043185 27 17.070966305054373 35.73875863997866 29.75752380607084 17.43275124889613 28 13.42644267249528 28.984490121484118 41.73915745802699 15.84990974799361 29 13.93998565290917 23.842585998378834 40.7843248968641 21.433103451847902 30 16.936818416070814 30.619903092393713 32.94651435615488 19.496764135380598 31 30.95915740623244 26.04644417453728 24.455315545357784 18.5390828738725 32 32.57980892989866 25.311997430990235 26.198461183868073 15.909732455243034 33 29.561999373285925 26.99972289914824 25.154283020969025 18.28399470659681 34 19.271716808108955 26.715111837385823 28.956780036307983 25.056391318197242 35 20.558034500350907 24.3550930877581 32.18332163639707 22.903550775493926 36 32.143439831564116 23.67166397766619 26.04489033798535 18.14000585278435 37 21.25751992147946 32.771189798545095 29.169137698405507 16.802152581569946 38 20.410937973434574 34.3418595797908 23.17236449897835 22.074837947796272 39 20.813899585902558 32.860017454763934 26.273822256636826 20.052260702696685 40 24.116579177036368 26.04540828350266 24.685801300561195 25.15221123889978 41 16.663084210171935 23.853462854242363 27.139309216063563 32.344143719522144 42 21.777019275342425 25.56708559826592 23.26844339243955 29.38745173395211 43 23.40984251866546 26.718996428765657 24.242180964984293 25.628980087584587 44 20.098357853737365 31.57318181700467 27.55832713956819 20.770133189689776 45 16.021090741464906 39.964158170202076 21.47169039288757 22.543060695445448 46 21.316306737694262 34.8885510733126 24.74044455263751 19.054697636355634 47 22.757490139612212 26.411336791482903 27.60520120888484 23.225971860020046 48 24.32039073809826 21.643907277393488 31.623681504942496 22.412020479565754 49 19.908271848884215 22.9258224327383 33.93190570283912 23.234000015538363 50 18.12472646002367 34.815779728130394 26.206230366627736 20.853263445218197 51 18.47433968420862 35.57793655685359 22.372656620250115 23.57506713868768 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 146.0 1 288.5 2 431.0 3 1932.0 4 3433.0 5 2631.5 6 1830.0 7 1952.0 8 2074.0 9 2156.0 10 2238.0 11 2232.0 12 2226.0 13 2091.0 14 1956.0 15 1870.0 16 1784.0 17 1678.0 18 1572.0 19 1527.0 20 1482.0 21 1533.5 22 1585.0 23 1630.5 24 1676.0 25 1954.0 26 2755.5 27 3279.0 28 3953.5 29 4628.0 30 5447.0 31 6266.0 32 6666.0 33 7066.0 34 7769.5 35 8473.0 36 9840.5 37 11208.0 38 17019.0 39 22830.0 40 30514.0 41 38198.0 42 40935.5 43 43673.0 44 40491.5 45 37310.0 46 35293.0 47 33276.0 48 30896.0 49 28516.0 50 26729.5 51 24943.0 52 22740.0 53 20537.0 54 18042.5 55 15548.0 56 14341.5 57 13135.0 58 12601.5 59 12068.0 60 10911.0 61 9754.0 62 8366.5 63 6979.0 64 5886.5 65 4794.0 66 4088.0 67 3382.0 68 2817.0 69 2252.0 70 1874.5 71 1497.0 72 1153.5 73 810.0 74 649.5 75 402.0 76 315.0 77 213.0 78 111.0 79 89.0 80 67.0 81 57.5 82 48.0 83 31.5 84 15.0 85 11.5 86 8.0 87 4.0 88 0.0 89 0.5 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 386141.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.944515086458054 #Duplication Level Percentage of deduplicated Percentage of total 1 69.52689444669386 17.343146674401318 2 6.103549589393798 3.0450016962715694 3 3.2568183469856002 2.4371926317070707 4 2.29960237123784 2.294498641687881 5 1.7846575513127978 2.225870860644169 6 1.4046781075777868 2.102340854765487 7 1.2624453649775231 2.204376121675761 8 1.0745320335129411 2.144294441667681 9 1.0807612047217119 2.426315775843539 >10 11.973505258458696 58.89299504585112 >50 0.2107536258967411 3.276782315268257 >100 0.01868751362631202 0.7497261363077218 >500 0.002076390402923558 0.48065344006463956 >1k 0.001038195201461779 0.3768053638437773 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 1455 0.3768053638437773 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 991 0.25664200382761737 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 865 0.22401143623702224 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0036256186211772383 0.0 2 0.0 0.0 0.0 0.021235766209752396 0.0 3 0.0 0.0 0.0 0.03185364931462859 0.0 4 0.0 0.0 0.0 0.050758660696481335 0.0 5 0.0 0.0 0.0 0.0883097107015313 0.0 6 0.0 0.0 0.0 0.12974535208641402 0.0 7 0.0 0.0 0.0 0.15408879140003262 0.0 8 0.0 0.0 0.0 0.33536972245889457 0.0 9 0.0 0.0 0.0 0.40865901315840586 0.0 10 0.0 0.0 0.0 0.5441017659352413 0.0 11 0.0 0.0 0.0 0.6798034914707322 0.0 12 0.0 0.0 0.0 0.7877951318300828 0.0 13 0.0 0.0 0.0 0.8426973566650524 0.0 14 0.0 0.0 0.0 0.8592716132190055 0.0 15 0.0 0.0 0.0 0.8887945077057344 0.0 16 0.0 0.0 0.0 0.9532787246109582 0.0 17 0.0 0.0 0.0 1.033301307035513 0.0 18 0.0 0.0 0.0 1.1537236398103283 0.0 19 0.0 0.0 0.0 1.2057771643000872 0.0 20 0.0 0.0 0.0 1.2547230156859799 0.0 21 0.0 0.0 0.0 1.3241277150056585 0.0 22 0.0 0.0 0.0 1.3906837139801265 0.0 23 0.0 0.0 0.0 1.4776985608883801 0.0 24 0.0 0.0 0.0 1.5403699684830152 0.0 25 0.0 0.0 0.0 1.5856902012477307 0.0 26 0.0 0.0 0.0 1.6374847529788341 0.0 27 0.0 0.0 0.0 1.6848767678127938 0.0 28 0.0 0.0 0.0 1.734599537474653 0.0 29 0.0 0.0 0.0 1.7902786805855893 0.0 30 0.0 0.0 0.0 1.862791053009134 0.0 31 0.0 0.0 0.0 1.9332316433634347 0.0 32 0.0 0.0 0.0 1.9948671599234475 0.0 33 0.0 0.0 0.0 2.0523591123449725 0.0 34 0.0 0.0 0.0 2.1186561385607847 0.0 35 0.0 0.0 0.0 2.221468323747025 0.0 36 0.0 0.0 0.0 2.3090011161725896 0.0 37 0.0 0.0 0.0 2.3789237610095793 0.0 38 0.0 0.0 0.0 2.446256678260014 0.0 39 0.0 0.0 0.0 2.5112588406825487 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGCGTAA 25 3.885977E-5 45.000004 1 TTAGGAC 65 0.0 45.000004 5 TCACCGG 25 3.885977E-5 45.000004 17 CATGATA 25 3.885977E-5 45.000004 1 CGGTTTA 25 3.885977E-5 45.000004 1 TTGTAGC 25 3.885977E-5 45.000004 34 ATCACGG 25 3.885977E-5 45.000004 2 ATCGTCC 25 3.885977E-5 45.000004 19 TTGCGAA 25 3.885977E-5 45.000004 1 GCGATAA 65 0.0 45.000004 9 TTCATAG 25 3.885977E-5 45.000004 2 ATTGCGA 25 3.885977E-5 45.000004 1 TTACCGG 25 3.885977E-5 45.000004 2 CCGCAAT 50 2.1827873E-11 45.000004 33 GCGTAAA 25 3.885977E-5 45.000004 21 CTTGTAT 20 7.0274604E-4 45.0 18 GTGCATC 20 7.0274604E-4 45.0 15 CGGGTTC 20 7.0274604E-4 45.0 6 CTTCGCA 40 6.7939254E-9 45.0 24 AACGTCA 20 7.0274604E-4 45.0 34 >>END_MODULE