SRR1546426_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546426_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1100935
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2759	0.25060516742586986	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2708	0.24597274135166927	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2531	0.22989549791767905	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGATCG	110	0.0	45.000004	7
TACCCGT	20	7.033157E-4	45.0	16
CGTCTAT	20	7.033157E-4	45.0	34
ACTACGG	20	7.033157E-4	45.0	2
ACCCGTT	20	7.033157E-4	45.0	17
CGCACTC	20	7.033157E-4	45.0	11
CGGTAAC	20	7.033157E-4	45.0	34
TGTACGC	20	7.033157E-4	45.0	13
GCGTCCA	20	7.033157E-4	45.0	37
TTCGAAT	20	7.033157E-4	45.0	14
CGTTTTA	1830	0.0	43.64754	1
AGGCGAT	880	0.0	43.46591	7
CGTTTTT	2355	0.0	42.89809	1
CGTTATT	425	0.0	41.823532	1
CGGTTAG	55	6.184564E-11	40.909092	2
TAAGGAT	750	0.0	40.2	5
GTTAGCG	45	1.9281288E-8	40.0	1
CGGTCTA	45	1.9281288E-8	40.0	31
GCGATAT	130	0.0	39.807693	9
CGTTATA	40	3.4580444E-7	39.375	35