##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546425_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 507006 Sequences flagged as poor quality 0 Sequence length 50 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.660260430843028 31.0 31.0 33.0 30.0 34.0 2 31.839842132045774 31.0 31.0 34.0 30.0 34.0 3 31.87252813576171 31.0 31.0 34.0 30.0 34.0 4 35.7623479801028 37.0 35.0 37.0 35.0 37.0 5 27.349216774554936 35.0 28.0 37.0 0.0 37.0 6 31.496394519985955 36.0 29.0 37.0 17.0 37.0 7 14.737902510029468 0.0 0.0 32.0 0.0 37.0 8 24.986262489990256 17.0 17.0 35.0 17.0 37.0 9 33.32463126669112 32.0 32.0 37.0 28.0 39.0 10 36.30029033186984 37.0 35.0 39.0 33.0 39.0 11 37.25952355593425 39.0 37.0 39.0 34.0 39.0 12 36.9076934000781 39.0 35.0 39.0 33.0 39.0 13 36.15793698693901 38.0 35.0 39.0 32.0 39.0 14 37.39736807848428 40.0 35.0 41.0 33.0 41.0 15 37.79974990434038 40.0 35.0 41.0 33.0 41.0 16 37.95020966221307 40.0 35.0 41.0 33.0 41.0 17 38.017027411904394 40.0 35.0 41.0 34.0 41.0 18 37.986868005506835 40.0 36.0 41.0 34.0 41.0 19 37.902468609838934 40.0 36.0 41.0 34.0 41.0 20 37.89202889117683 40.0 35.0 41.0 34.0 41.0 21 37.73121422626162 40.0 35.0 41.0 34.0 41.0 22 37.66116969029952 39.0 35.0 41.0 33.0 41.0 23 37.56428129055672 39.0 35.0 41.0 34.0 41.0 24 37.42870104101332 39.0 35.0 41.0 33.0 41.0 25 37.24785308260652 39.0 35.0 41.0 33.0 41.0 26 36.99975148223098 38.0 35.0 40.0 33.0 41.0 27 36.799738070160906 38.0 35.0 40.0 33.0 41.0 28 36.85309049597046 38.0 35.0 40.0 33.0 41.0 29 36.93553133493489 38.0 35.0 40.0 33.0 41.0 30 36.77979156065214 38.0 35.0 40.0 33.0 41.0 31 36.53974903650055 38.0 35.0 40.0 32.0 41.0 32 36.210374236202334 38.0 35.0 40.0 31.0 41.0 33 36.015104357739354 38.0 35.0 40.0 31.0 41.0 34 35.83759166558187 38.0 35.0 40.0 30.0 41.0 35 35.72891445071656 38.0 35.0 40.0 30.0 41.0 36 35.52161710117829 38.0 35.0 40.0 30.0 41.0 37 35.25889437205871 37.0 34.0 40.0 29.0 41.0 38 35.14240265401198 37.0 34.0 40.0 29.0 41.0 39 35.155692437564845 37.0 34.0 40.0 29.0 41.0 40 34.91400299010268 37.0 34.0 40.0 28.0 41.0 41 34.82592316461738 37.0 34.0 40.0 27.0 40.0 42 34.82158396547575 37.0 34.0 40.0 27.0 41.0 43 34.680678335167634 37.0 34.0 40.0 27.0 41.0 44 34.4674007802669 36.0 34.0 40.0 27.0 40.0 45 34.23314516987965 36.0 33.0 39.0 26.0 40.0 46 34.2659771284758 36.0 34.0 39.0 26.0 40.0 47 34.15892908565185 36.0 33.0 39.0 26.0 40.0 48 34.20642950970994 36.0 33.0 39.0 26.0 40.0 49 34.11517023467178 36.0 33.0 39.0 26.0 40.0 50 34.12904186538226 36.0 34.0 39.0 26.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 0.0 13 1.0 14 2.0 15 8.0 16 15.0 17 49.0 18 125.0 19 243.0 20 561.0 21 913.0 22 1625.0 23 2636.0 24 3992.0 25 5920.0 26 7739.0 27 8489.0 28 8524.0 29 9510.0 30 11871.0 31 16942.0 32 24877.0 33 53207.0 34 47822.0 35 53823.0 36 60215.0 37 120521.0 38 56154.0 39 11221.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.54717301175923 23.09499295866321 29.624501485189526 16.733332544388034 2 30.36433493883702 24.97524684126026 31.70475300095068 12.955665218952046 3 27.54641956899918 24.4062200447332 34.6108330078934 13.436527378374223 4 25.918430945590387 26.559054527954306 32.53077872845686 14.991735797998446 5 17.660737742748605 47.36472546675976 24.14507915093707 10.829457639554562 6 21.752405296978733 38.81137501331345 28.31307716279492 11.123142526912897 7 37.875291416669626 57.08512325297925 3.972339577835371 1.0672457525157493 8 87.88909795939298 2.9983866068646132 7.45474412531607 1.6577713084263301 9 84.2627108949401 4.317305909594758 9.22020646698461 2.199776728480531 10 63.69924616276731 15.548533942399104 12.659021786724416 8.093198108109174 11 59.91290043904806 15.198439466199613 16.01913981294107 8.86952028181126 12 52.55953578458637 18.990110570683584 19.23665597645787 9.213697668272172 13 20.567014986015945 48.64064725072287 19.944142672867777 10.848195090393407 14 12.48091738559307 50.47356441541125 26.242884699589354 10.802633499406317 15 10.393368125820997 21.005274099320324 57.99872190861647 10.602635866242215 16 12.545019191094386 13.049549709470895 56.96244225906597 17.442988840368752 17 12.91897926257283 14.676552151256592 29.06099730575181 43.34347128041877 18 21.076476412507937 21.73287890084141 35.669203125801275 21.52144156084938 19 31.155449836885555 22.329124310165955 25.880956043912697 20.634469809035792 20 35.62009128097103 20.875492597720736 23.025565772397172 20.47885034891106 21 21.32262734563299 27.81840846064938 28.20558336587733 22.6533808278403 22 22.59519611207757 23.99143205405853 25.854526376413688 27.55884545745021 23 19.862092361826093 31.81402192478984 23.01195646599843 25.311929247385635 24 21.032492712117808 22.09461032019345 41.323771316315785 15.549125651372961 25 14.875366366472981 23.083553251835284 40.27999668642975 21.76108369526199 26 14.782270821252608 37.72440562833576 28.438519465252877 19.054804085158754 27 16.628205583365876 35.04850041222392 30.658414298844587 17.664879705565614 28 12.863555855354768 27.352339025573663 45.375991605622026 14.408113513449544 29 12.647976552545728 21.88909006994 44.970473722204474 20.4924596553098 30 16.424657696358622 29.367305317885783 34.76704417699199 19.440992808763603 31 32.32999214999428 24.994970473722205 23.937586537437426 18.73745083884609 32 33.09053541772681 26.740117473954943 24.966765679301623 15.202581429016618 33 28.932399222099935 28.262781900016964 25.01646923310572 17.78834964477738 34 18.720488514928817 27.72511567910439 29.646591953546903 23.907803852419892 35 19.248490155935038 25.78628260809537 32.70099367660343 22.26423355936616 36 32.90434432728607 21.174700102168416 27.844049182849908 18.076906387695608 37 21.390673877626696 31.750314591937766 29.919961499469434 16.9390500309661 38 20.786341778992753 33.3664690358694 22.44608545066528 23.40110373447257 39 21.21197776752149 31.501007877618804 27.181137895803992 20.10587645905571 40 23.716287381214425 25.970698571614538 24.983728003218896 25.32928604395214 41 16.490337392456894 23.14509098511655 27.226107777817226 33.13846384460933 42 23.973483548518164 25.519619097209894 22.3407612533185 28.166136100953445 43 24.472885922454566 28.59847812451924 22.862845804586136 24.06579014844006 44 20.618296430416997 33.28915239661858 25.632241038567592 20.46031013439683 45 15.897445000650881 40.88728732993298 20.838017696043046 22.377249973373097 46 22.8482503165643 34.21064050524057 25.221595010709937 17.719514167485197 47 24.06145094929843 26.47739868956186 26.822562257645867 22.638588103493845 48 26.388642343483117 20.253409229871046 30.649933136885956 22.708015289759885 49 19.731719151252648 21.34077308749798 34.06034642588056 24.867161335368813 50 17.27159047427447 35.43606979010111 26.17562711289413 21.1167126227303 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 150.0 1 317.0 2 484.0 3 2598.0 4 4712.0 5 3595.0 6 2478.0 7 2772.5 8 3067.0 9 3218.5 10 3370.0 11 3351.5 12 3333.0 13 3238.0 14 3143.0 15 2889.0 16 2635.0 17 2370.0 18 2105.0 19 1914.0 20 1723.0 21 1671.0 22 1619.0 23 1825.0 24 2031.0 25 2411.5 26 2792.0 27 3311.0 28 3830.0 29 4479.5 30 5129.0 31 6372.5 32 7616.0 33 8178.0 34 8740.0 35 9441.0 36 10142.0 37 13237.5 38 16333.0 39 26772.0 40 37211.0 41 48332.5 42 59454.0 43 60526.5 44 61599.0 45 56746.0 46 51893.0 47 46503.0 48 41113.0 49 39699.5 50 38286.0 51 35826.5 52 33367.0 53 28915.5 54 24464.0 55 21104.0 56 17744.0 57 16250.5 58 14757.0 59 14497.0 60 14237.0 61 12445.5 62 10654.0 63 8559.5 64 6465.0 65 5223.5 66 3982.0 67 3331.0 68 2680.0 69 2180.0 70 1680.0 71 1349.0 72 1018.0 73 762.5 74 507.0 75 351.0 76 195.0 77 177.0 78 159.0 79 119.0 80 79.0 81 47.0 82 15.0 83 13.5 84 12.0 85 6.0 86 0.0 87 0.5 88 1.0 89 1.0 90 1.0 91 0.5 92 0.0 93 0.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 507006.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.83576257665146 #Duplication Level Percentage of deduplicated Percentage of total 1 71.00776078400898 14.084930840112644 2 5.274567826540276 2.0925015020339486 3 2.287948616343872 1.361496166241258 4 1.6789018560860254 1.3320919442728743 5 1.2999224476379552 1.2892476519703058 6 1.1959286038330266 1.4233293506554907 7 1.0519371986176165 1.4606183562128823 8 0.9909408400983157 1.5724853785358186 9 0.9489433473783022 1.6940713443560005 >10 13.191212474830264 59.06082917630572 >50 1.0259387506955615 12.58365159817026 >100 0.04199749271853175 1.0891167020089356 >500 0.001999880605644369 0.26737011733892646 >1k 0.001999880605644369 0.688259871784922 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 2008 0.39605053983582045 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1462 0.28835950659361037 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 733 0.14457422594604405 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 615 0.12130033964095098 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.005325380764724678 0.0 2 0.0 0.0 0.0 0.027613085446720552 0.0 3 0.0 0.0 0.0 0.03609424740535615 0.0 4 0.0 0.0 0.0 0.05562064354267997 0.0 5 0.0 0.0 0.0 0.08402267428787825 0.0 6 0.0 0.0 0.0 0.12682295673029512 0.0 7 0.0 0.0 0.0 0.1522664426062019 0.0 8 0.0 0.0 0.0 0.31755048263728636 0.0 9 0.0 0.0 0.0 0.3897389774479986 0.0 10 0.0 0.0 0.0 0.5228734965661156 0.0 11 0.0 0.0 0.0 0.6601499785012406 0.0 12 0.0 0.0 0.0 0.7903259527500661 0.0 13 0.0 0.0 0.0 0.8396350339049242 0.0 14 0.0 0.0 0.0 0.8556111761990982 0.0 15 0.0 0.0 0.0 0.8820408436981022 0.0 16 0.0 0.0 0.0 0.9412117410839319 0.0 17 0.0 0.0 0.0 1.0116251089730695 0.0 18 0.0 0.0 0.0 1.114976943073652 0.0 19 0.0 0.0 0.0 1.1532407900498218 0.0 20 0.0 0.0 0.0 1.2005775079584857 0.0 21 0.0 0.0 0.0 1.25817051474736 0.0 22 0.0 0.0 0.0 1.3163552305100925 0.0 23 0.0 0.0 0.0 1.3885437253208048 0.0 24 0.0 0.0 0.0 1.439233460747999 0.0 25 0.0 0.0 0.0 1.478483489347266 0.0 26 0.0 0.0 0.0 1.5214810081143024 0.0 27 0.0 0.0 0.0 1.5571807828704196 0.0 28 0.0 0.0 0.0 1.5976142294174034 0.0 29 0.0 0.0 0.0 1.6368642580166703 0.0 30 0.0 0.0 0.0 1.6920904289101115 0.0 31 0.0 0.0 0.0 1.7540226348406134 0.0 32 0.0 0.0 0.0 1.8035289523200908 0.0 33 0.0 0.0 0.0 1.851457379202613 0.0 34 0.0 0.0 0.0 1.8972162065143214 0.0 35 0.0 0.0 0.0 1.9686157560265558 0.0 36 0.0 0.0 0.0 2.0266032354646693 0.0 37 0.0 0.0 0.0 2.0869575507982154 0.0 38 0.0 0.0 0.0 2.135674922979215 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTACGC 20 7.852312E-4 44.000004 9 GTCGATG 20 7.852312E-4 44.000004 1 CAAGTGC 20 7.852312E-4 44.000004 42 CACGGTC 20 7.852312E-4 44.000004 23 ACGTTAG 20 7.852312E-4 44.000004 2 ACACCCG 20 7.852312E-4 44.000004 13 ATGTGCG 20 7.852312E-4 44.000004 32 AGCTTAC 20 7.852312E-4 44.000004 25 TAGCGCA 20 7.852312E-4 44.000004 1 CTCCCTA 20 7.852312E-4 44.000004 29 CAACCGG 20 7.852312E-4 44.000004 15 CAACCGA 20 7.852312E-4 44.000004 38 ATTAACG 20 7.852312E-4 44.000004 1 TAAGTTA 20 7.852312E-4 44.000004 16 GTAGGCT 40 8.296411E-9 44.000004 5 CGATTAC 20 7.852312E-4 44.000004 10 TAACGCT 20 7.852312E-4 44.000004 36 GCGTTAT 20 7.852312E-4 44.000004 29 TCGATAG 20 7.852312E-4 44.000004 2 AATATCG 20 7.852312E-4 44.000004 12 >>END_MODULE