SRR1546424_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546424_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	181247
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	804	0.4435935491346064	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	414	0.2284175738081182	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	367	0.20248611011492607	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGAAAG	25	3.877765E-5	45.000004	2
TAGGTGA	25	3.877765E-5	45.000004	6
AGGGTAT	25	3.877765E-5	45.000004	6
TATGCAG	25	3.877765E-5	45.000004	2
CGGGGAT	25	3.877765E-5	45.000004	6
TTTATGG	25	3.877765E-5	45.000004	2
TAAGGTG	25	3.877765E-5	45.000004	5
AGGTGTA	25	3.877765E-5	45.000004	7
CATATAG	20	7.0175476E-4	45.0	2
CTACTAG	20	7.0175476E-4	45.0	2
GGATGGT	20	7.0175476E-4	45.0	8
TAGACTA	20	7.0175476E-4	45.0	1
TTAGCGG	20	7.0175476E-4	45.0	2
AACCCAC	20	7.0175476E-4	45.0	30
TCACAAG	35	1.2043711E-7	45.0	2
GTTAGAA	20	7.0175476E-4	45.0	1
AAGGTAT	35	1.2043711E-7	45.0	6
CTAAGGT	20	7.0175476E-4	45.0	4
TGTTGCA	20	7.0175476E-4	45.0	1
CACTCCT	20	7.0175476E-4	45.0	32