##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546424_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 181247 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.160984733540417 31.0 31.0 33.0 30.0 34.0 2 31.31796940087284 31.0 31.0 33.0 30.0 34.0 3 31.239992937814144 31.0 31.0 34.0 28.0 34.0 4 35.206480658990216 35.0 35.0 37.0 33.0 37.0 5 32.96118004711802 35.0 35.0 37.0 28.0 37.0 6 34.13710571761188 36.0 35.0 37.0 29.0 37.0 7 15.184996165453773 0.0 0.0 35.0 0.0 37.0 8 24.886889162303376 17.0 17.0 35.0 17.0 37.0 9 32.875418627618664 32.0 32.0 37.0 28.0 39.0 10 35.81939563137597 37.0 35.0 38.0 32.0 39.0 11 36.765060938939676 38.0 35.0 39.0 33.0 39.0 12 36.323172245609584 37.0 35.0 39.0 32.0 39.0 13 35.62044613152218 37.0 35.0 39.0 31.0 39.0 14 36.581460658659175 39.0 35.0 40.0 31.0 41.0 15 37.139511274669374 39.0 35.0 41.0 32.0 41.0 16 37.330615127422796 39.0 35.0 41.0 33.0 41.0 17 37.35489690863849 39.0 35.0 41.0 33.0 41.0 18 37.2493613687399 39.0 35.0 41.0 32.0 41.0 19 37.13510844317423 39.0 35.0 41.0 32.0 41.0 20 37.21911535087477 39.0 35.0 41.0 32.0 41.0 21 37.03826821961191 39.0 35.0 41.0 32.0 41.0 22 37.08509933957527 39.0 35.0 41.0 32.0 41.0 23 37.09957682058186 38.0 35.0 41.0 33.0 41.0 24 36.92899192814226 38.0 35.0 41.0 32.0 41.0 25 36.676590509084285 38.0 35.0 40.0 32.0 41.0 26 36.537664071681185 38.0 35.0 40.0 32.0 41.0 27 36.43586376602096 38.0 35.0 40.0 31.0 41.0 28 36.41223854739665 38.0 35.0 40.0 31.0 41.0 29 36.54828493712999 38.0 35.0 40.0 32.0 41.0 30 36.36329428900892 38.0 35.0 40.0 31.0 41.0 31 36.187147925207036 38.0 35.0 40.0 31.0 41.0 32 35.98800531870872 38.0 34.0 40.0 30.0 41.0 33 35.79443521823809 38.0 34.0 40.0 30.0 41.0 34 35.66385650521112 38.0 34.0 40.0 30.0 41.0 35 35.48878602128587 38.0 34.0 40.0 29.0 41.0 36 35.268087195926 38.0 34.0 40.0 27.0 41.0 37 35.032182601643065 37.0 34.0 40.0 27.0 41.0 38 35.04566696276352 37.0 34.0 40.0 27.0 41.0 39 34.991067438357604 37.0 34.0 40.0 27.0 41.0 40 34.796283524692825 37.0 34.0 40.0 25.0 41.0 41 34.78662819246664 37.0 34.0 40.0 25.0 41.0 42 34.747228919651086 37.0 34.0 40.0 25.0 41.0 43 34.63860367344011 37.0 33.0 40.0 25.0 41.0 44 34.41677931220931 36.0 33.0 40.0 24.0 41.0 45 34.30633886353981 36.0 33.0 40.0 24.0 41.0 46 34.35608865250183 36.0 34.0 40.0 24.0 41.0 47 34.36870679238829 36.0 33.0 40.0 24.0 41.0 48 34.41209509674643 36.0 33.0 40.0 24.0 41.0 49 34.36036458534486 36.0 34.0 40.0 24.0 41.0 50 34.213189735554245 36.0 34.0 40.0 24.0 41.0 51 34.000303453298535 35.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 1.0 15 9.0 16 17.0 17 38.0 18 102.0 19 194.0 20 286.0 21 477.0 22 780.0 23 1180.0 24 1824.0 25 2560.0 26 3024.0 27 3278.0 28 3346.0 29 4002.0 30 4795.0 31 6645.0 32 9230.0 33 15693.0 34 20077.0 35 18614.0 36 19178.0 37 31238.0 38 29991.0 39 4667.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.967392563738986 23.782462606277623 29.767665119974403 16.48247971000899 2 29.824493646791396 24.661373705495816 32.4866066748691 13.027525972843687 3 28.00763598845774 23.980534850232004 34.55836510397414 13.45346405733612 4 26.351332711713848 27.22251954515109 31.315828675784978 15.110319067350082 5 21.470148471422977 36.01714787003371 29.243518513409878 13.269185145133436 6 21.680358847318853 39.31706455830993 27.89839280098429 11.104183793386925 7 37.2574442611464 57.62633312551381 4.3255888373324805 0.790633776007327 8 88.35291066886624 3.122810308584418 6.9303216053231225 1.593957417226216 9 84.59340016662344 4.462418688309324 8.610349412679934 2.333831732387295 10 63.89402307348535 15.848538182700956 12.134821541873798 8.122617201939894 11 60.44624186883093 15.34866784001942 15.574878480747268 8.630211810402379 12 53.142396839671825 19.088315944539772 18.665136526397678 9.104150689390721 13 20.627651768029263 49.32054047791136 19.17880020083091 10.873007553228467 14 12.403515644396872 51.33326344711912 25.632424260815352 10.630796647668651 15 10.241272959000701 21.02655492228837 58.16813519672049 10.564036921990432 16 12.4597924379438 13.139527826667477 56.972529200483315 17.428150534905406 17 12.651795615927435 14.847142297527682 28.6669572461889 43.834104840355984 18 20.93882933234757 21.678703647508648 36.229013445739795 21.15345357440399 19 32.0893587204202 21.867948159141946 25.629113861194945 20.413579259242912 20 36.34708436553433 20.826275745253714 22.59016700966085 20.23647287955111 21 21.360905283949528 28.34253808338897 27.85425413937886 22.442302493282646 22 22.31981770732757 24.202883358069375 25.347729893460308 28.129569041142748 23 19.681429209862785 32.24770616892969 22.48699288815815 25.583871733049374 24 20.445028055636783 22.05774440404531 42.056971977467214 15.440255562850696 25 14.693208715178734 22.99238056354036 40.91102197553615 21.403388745744756 26 14.4427218105679 38.76367608843181 28.100327177829147 18.693274923171142 27 16.407443985279755 36.34101529956358 30.040773088658018 17.210767626498647 28 12.622002019343768 27.983359724574754 45.31606040375841 14.078577852323074 29 12.562966559446501 22.274575579182002 44.82887992628844 20.333577935083063 30 16.3533741248131 30.36077838529741 34.15891021644496 19.126937273444526 31 32.93737275651459 25.26165950332971 23.62080475814772 18.180162982007978 32 34.38787952352315 26.167053799511166 24.760133960837972 14.684932716127715 33 29.927667768294096 27.95963519396183 24.387162270272057 17.725534767472013 34 19.04914288236495 27.551352574111572 28.994686808609245 24.404817734914232 35 19.272043123472386 25.56952666802761 32.951717821536356 22.206712386963645 36 33.66290200665391 21.60366792277941 27.24679580903408 17.486634261532604 37 21.230696232213496 32.968269819638394 29.4614531550867 16.339580793061405 38 20.110677693975624 34.85023200384006 21.942983883871182 23.09610641831313 39 21.260489828797166 32.28908616418479 27.031619833707595 19.418804173310455 40 24.47157746059245 25.672149056260242 24.610614244649568 25.24565923849774 41 16.180129878011773 23.20810827213692 26.953825442628016 33.657936407223296 42 23.6985991492273 24.95379233863181 22.267403046671117 29.08020546546977 43 24.166468962244892 27.887909868853 23.063002422109054 24.88261874679305 44 20.285577140587154 32.919165558602344 26.495886828471644 20.29937047233885 45 15.529636352601697 41.95159092288424 20.841724276815615 21.677048447698443 46 22.578028877719355 35.17740983299034 24.825238486705985 17.41932280258432 47 23.704116481927976 26.724856135549828 26.439610034924716 23.131417347597477 48 25.918222094710536 20.582961373153765 31.361622537200617 22.13719399493509 49 19.911501983481106 21.74932550607734 34.418776586646956 23.9203959237946 50 17.375735874248953 36.65660673004243 25.684287188201736 20.28337020750688 51 17.65491290890332 38.818297682168534 21.144074108812834 22.382715300115315 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 57.0 1 107.5 2 158.0 3 807.5 4 1457.0 5 1155.0 6 853.0 7 905.5 8 958.0 9 997.5 10 1037.0 11 1038.0 12 1039.0 13 1006.5 14 974.0 15 922.0 16 870.0 17 779.0 18 688.0 19 628.0 20 568.0 21 568.5 22 569.0 23 621.0 24 673.0 25 763.5 26 1082.0 27 1310.0 28 1483.5 29 1657.0 30 2087.5 31 2518.0 32 2717.0 33 2916.0 34 3255.5 35 3595.0 36 4484.5 37 5374.0 38 7890.0 39 10406.0 40 14847.5 41 19289.0 42 21085.5 43 22882.0 44 20897.5 45 18913.0 46 17403.5 47 15894.0 48 14785.0 49 13676.0 50 12785.0 51 11894.0 52 10877.5 53 9861.0 54 8583.5 55 7306.0 56 6672.5 57 6039.0 58 5626.0 59 5213.0 60 4790.5 61 4368.0 62 3564.5 63 2761.0 64 2180.5 65 1600.0 66 1366.5 67 1133.0 68 925.0 69 717.0 70 626.0 71 535.0 72 441.5 73 348.0 74 246.5 75 104.5 76 64.0 77 53.0 78 42.0 79 29.5 80 17.0 81 13.5 82 10.0 83 9.0 84 8.0 85 4.5 86 1.0 87 0.5 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 181247.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.621422699410196 #Duplication Level Percentage of deduplicated Percentage of total 1 63.50198749575535 17.540152388729194 2 7.073087909234364 3.9073750186209977 3 4.152767512933703 3.4411604054136067 4 3.241915186864551 3.581852389280926 5 2.536803627429439 3.5035062649312816 6 2.2152088368655494 3.671233179031929 7 1.9475460919241756 3.765579568213543 8 1.8217046521383058 4.025445938415532 9 1.7418053252901344 4.330002703493023 >10 11.737211113996365 50.85656590178045 >50 0.017977348540838545 0.30179809872715135 >100 0.009987415856021413 0.6317345942277665 >500 0.0019974831712042825 0.4435935491346064 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 804 0.4435935491346064 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 414 0.2284175738081182 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 367 0.20248611011492607 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.004965599430611266 0.0 2 0.0 0.0 0.0 0.031448796393871346 0.0 3 0.0 0.0 0.0 0.039724795444890125 0.0 4 0.0 0.0 0.0 0.05517332700679184 0.0 5 0.0 0.0 0.0 0.08055305742991609 0.0 6 0.0 0.0 0.0 0.108139720933312 0.0 7 0.0 0.0 0.0 0.1263469188455533 0.0 8 0.0 0.0 0.0 0.26924583579314415 0.0 9 0.0 0.0 0.0 0.33490209493122647 0.0 10 0.0 0.0 0.0 0.4380762164339272 0.0 11 0.0 0.0 0.0 0.5456642040971713 0.0 12 0.0 0.0 0.0 0.6477348590597362 0.0 13 0.0 0.0 0.0 0.6775284556434038 0.0 14 0.0 0.0 0.0 0.6918735206651696 0.0 15 0.0 0.0 0.0 0.7178049843583618 0.0 16 0.0 0.0 0.0 0.7608401794236594 0.0 17 0.0 0.0 0.0 0.8292551049120813 0.0 18 0.0 0.0 0.0 0.9120150954222691 0.0 19 0.0 0.0 0.0 0.9401534921957329 0.0 20 0.0 0.0 0.0 0.980430020910691 0.0 21 0.0 0.0 0.0 1.0449828135086374 0.0 22 0.0 0.0 0.0 1.0830524091433238 0.0 23 0.0 0.0 0.0 1.1404326692303872 0.0 24 0.0 0.0 0.0 1.175191865244666 0.0 25 0.0 0.0 0.0 1.2000198623977225 0.0 26 0.0 0.0 0.0 1.2342273251419333 0.0 27 0.0 0.0 0.0 1.2761590536670953 0.0 28 0.0 0.0 0.0 1.3076078500609665 0.0 29 0.0 0.0 0.0 1.3445739791555171 0.0 30 0.0 0.0 0.0 1.3964369065419013 0.0 31 0.0 0.0 0.0 1.452161966818761 0.0 32 0.0 0.0 0.0 1.4885763626432438 0.0 33 0.0 0.0 0.0 1.5299563578983377 0.0 34 0.0 0.0 0.0 1.5691294200731598 0.0 35 0.0 0.0 0.0 1.628716613240495 0.0 36 0.0 0.0 0.0 1.6745104746561323 0.0 37 0.0 0.0 0.0 1.7385115339840107 0.0 38 0.0 0.0 0.0 1.78375366212958 0.0 39 0.0 0.0 0.0 1.8367200560561003 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGAAAG 25 3.877765E-5 45.000004 2 TAGGTGA 25 3.877765E-5 45.000004 6 AGGGTAT 25 3.877765E-5 45.000004 6 TATGCAG 25 3.877765E-5 45.000004 2 CGGGGAT 25 3.877765E-5 45.000004 6 TTTATGG 25 3.877765E-5 45.000004 2 TAAGGTG 25 3.877765E-5 45.000004 5 AGGTGTA 25 3.877765E-5 45.000004 7 CATATAG 20 7.0175476E-4 45.0 2 CTACTAG 20 7.0175476E-4 45.0 2 GGATGGT 20 7.0175476E-4 45.0 8 TAGACTA 20 7.0175476E-4 45.0 1 TTAGCGG 20 7.0175476E-4 45.0 2 AACCCAC 20 7.0175476E-4 45.0 30 TCACAAG 35 1.2043711E-7 45.0 2 GTTAGAA 20 7.0175476E-4 45.0 1 AAGGTAT 35 1.2043711E-7 45.0 6 CTAAGGT 20 7.0175476E-4 45.0 4 TGTTGCA 20 7.0175476E-4 45.0 1 CACTCCT 20 7.0175476E-4 45.0 32 >>END_MODULE