SRR1546423_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546423_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1860366
Sequences flagged as poor quality	0
Sequence length	50
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8279	0.44501995843828585	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA	7705	0.41416581468377733	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3437	0.18474859248126446	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3333	0.17915829465814792	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACTA	20	7.8577385E-4	44.000004	40
CTATCGA	20	7.8577385E-4	44.000004	38
ACACCGC	20	7.8577385E-4	44.000004	40
CGCGACA	20	7.8577385E-4	44.000004	36
CCTCGAA	20	7.8577385E-4	44.000004	41
CGCCTCG	20	7.8577385E-4	44.000004	34
ATATCGT	20	7.8577385E-4	44.000004	38
CCCGTAC	20	7.8577385E-4	44.000004	43
CCGTAGT	20	7.8577385E-4	44.000004	10
GTTCGCC	20	7.8577385E-4	44.000004	37
TCTCGTC	40	8.3164196E-9	44.000004	42
ACGTGGT	20	7.8577385E-4	44.000004	19
TTGCGAT	20	7.8577385E-4	44.000004	37
CTCGACT	20	7.8577385E-4	44.000004	42
CGTAAAT	20	7.8577385E-4	44.000004	42
TTACGGA	20	7.8577385E-4	44.000004	1
AATCGAC	20	7.8577385E-4	44.000004	42
GGTACGT	50	2.7284841E-11	44.0	8
TGGACCG	25	4.4439053E-5	44.0	14
ATTACGG	95	0.0	44.0	2