SRR1546422_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546422_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	722442
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3003	0.41567350735422354	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2327	0.3221019818892036	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1857	0.2570448561960683	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAC	50	2.1827873E-11	45.000004	25
GCGAATG	30	2.1643773E-6	45.000004	1
CATGCCG	25	3.889361E-5	45.000004	37
CGTTAAG	25	3.889361E-5	45.000004	2
AACATCG	25	3.889361E-5	45.000004	19
GGAACGT	35	1.2110831E-7	45.000004	8
AACGACC	25	3.889361E-5	45.000004	29
ATGCGGC	25	3.889361E-5	45.000004	19
AATAGGC	60	0.0	45.000004	4
CCCGGTT	25	3.889361E-5	45.000004	44
TCCGACA	20	7.031546E-4	45.0	23
TAGGTTC	20	7.031546E-4	45.0	32
CGCATGA	20	7.031546E-4	45.0	38
CGTTGGC	20	7.031546E-4	45.0	30
CGGCAAC	20	7.031546E-4	45.0	8
CGACACA	20	7.031546E-4	45.0	25
TTATCGC	40	6.8084773E-9	45.0	31
CATTATC	20	7.031546E-4	45.0	17
ACGATGT	20	7.031546E-4	45.0	45
TCGTGAA	20	7.031546E-4	45.0	1