##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546422_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 722442 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.010982196494666 31.0 31.0 33.0 30.0 33.0 2 31.157928248911333 31.0 31.0 33.0 30.0 34.0 3 31.06436779699962 31.0 31.0 34.0 28.0 34.0 4 35.011700593265616 35.0 35.0 37.0 32.0 37.0 5 32.727684713790175 35.0 35.0 37.0 28.0 37.0 6 33.94243274892656 35.0 35.0 37.0 28.0 37.0 7 15.72647769647944 0.0 0.0 35.0 0.0 37.0 8 25.147888688642134 17.0 17.0 35.0 17.0 37.0 9 32.83377904385404 32.0 32.0 37.0 27.0 39.0 10 35.59277422962674 37.0 35.0 37.0 32.0 39.0 11 36.518849956121045 37.0 35.0 39.0 32.0 39.0 12 36.19688085687155 37.0 35.0 39.0 32.0 39.0 13 35.68058335478834 37.0 35.0 39.0 31.0 39.0 14 36.70352775724557 39.0 35.0 40.0 31.0 41.0 15 37.17227680561208 39.0 35.0 41.0 32.0 41.0 16 37.31037508893448 39.0 35.0 41.0 32.0 41.0 17 37.28130424310879 39.0 35.0 41.0 32.0 41.0 18 37.15567062823036 39.0 35.0 40.0 32.0 41.0 19 37.0478875812868 39.0 35.0 40.0 32.0 41.0 20 37.1050257321695 39.0 35.0 40.0 32.0 41.0 21 36.93607791352108 39.0 35.0 40.0 32.0 41.0 22 36.963334080798184 39.0 35.0 40.0 32.0 41.0 23 36.96493005666891 38.0 35.0 40.0 32.0 41.0 24 36.7752207097594 38.0 35.0 40.0 32.0 41.0 25 36.519882564967155 38.0 35.0 40.0 31.0 41.0 26 36.37463630298349 38.0 35.0 40.0 31.0 41.0 27 36.24124981659428 38.0 35.0 40.0 31.0 41.0 28 36.195831637695484 38.0 35.0 40.0 31.0 41.0 29 36.26283909296525 38.0 35.0 40.0 31.0 41.0 30 36.01813017515593 38.0 35.0 40.0 30.0 41.0 31 35.83463586004136 38.0 34.0 40.0 30.0 41.0 32 35.62504117977637 38.0 34.0 40.0 29.0 41.0 33 35.34053806395531 38.0 34.0 40.0 27.0 41.0 34 35.117891816920945 38.0 34.0 40.0 26.0 41.0 35 34.88668709737252 38.0 34.0 40.0 24.0 41.0 36 34.64390497783905 38.0 34.0 40.0 23.0 41.0 37 34.47024536225746 37.0 33.0 40.0 23.0 41.0 38 34.43906500452631 37.0 33.0 40.0 23.0 41.0 39 34.35476481156965 37.0 33.0 40.0 23.0 41.0 40 34.15250359198385 37.0 33.0 40.0 23.0 41.0 41 34.05722258672669 37.0 33.0 40.0 22.0 41.0 42 34.03334246901481 37.0 33.0 40.0 22.0 41.0 43 33.91239988815711 37.0 33.0 40.0 21.0 41.0 44 33.69509663059457 36.0 33.0 40.0 20.0 41.0 45 33.606737980349976 36.0 33.0 40.0 20.0 41.0 46 33.59349539478602 36.0 33.0 40.0 20.0 41.0 47 33.57139811915697 36.0 33.0 40.0 20.0 41.0 48 33.57169572090216 36.0 33.0 40.0 20.0 41.0 49 33.51788655698312 36.0 33.0 40.0 20.0 41.0 50 33.348906901868936 36.0 32.0 40.0 19.0 41.0 51 33.14876349935358 35.0 32.0 40.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 3.0 14 14.0 15 32.0 16 95.0 17 281.0 18 580.0 19 1057.0 20 1856.0 21 2895.0 22 4637.0 23 6869.0 24 9889.0 25 13245.0 26 15424.0 27 15954.0 28 16121.0 29 17943.0 30 21410.0 31 27226.0 32 36809.0 33 56661.0 34 72133.0 35 71092.0 36 77411.0 37 119525.0 38 112014.0 39 21264.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.707517004825302 23.635392183732396 28.489345857522125 17.167744953920177 2 32.35955273918183 24.37275241472672 30.48023232314843 12.787462522943018 3 27.50186174115015 23.41309060104479 35.70113586973072 13.383911788074338 4 24.2844408270837 27.434174646546023 33.474936396278174 14.806448130092104 5 20.98770558743816 35.34262958133663 30.86226991232514 12.807394918900064 6 20.971095257473955 38.10382009905293 30.550549386663565 10.374535256809542 7 37.607309652539584 55.82192065245376 5.7701517907319895 0.8006179042746684 8 85.70141270856345 3.5911533382610648 9.076991647772417 1.6304423054030637 9 81.76725605654156 4.812704687711955 10.795468701985765 2.624570553760717 10 55.151970677230835 20.87946160383809 15.280673050570147 8.68789466836092 11 51.298512544951706 17.81568624194053 20.732044925405777 10.153756287701988 12 44.57465097544163 20.627815104880394 23.658369806849546 11.139164112828434 13 20.10486654984068 43.932384883492375 23.97728814216228 11.985460424504666 14 13.222237909756076 45.28197419308401 29.25397471354102 12.241813183618893 15 11.168647448514898 22.269469383009294 54.57822219638393 11.983660972091876 16 12.891277085219297 16.754286157227845 52.39867006624753 17.95576669130532 17 14.214289866868205 17.003302687274548 31.70385996384485 37.0785474820124 18 20.76429664941961 22.223375717358625 36.96227517226296 20.050052460958803 19 28.804526868592912 22.566102192286717 28.514676610717537 20.114694328402834 20 32.143895288479904 20.503237630148856 27.45812120557775 19.89474587579349 21 21.06785042951545 26.88880214605463 30.165466570326753 21.877880854103164 22 21.571973943929063 23.930917637678874 27.913659504846063 26.583448913545997 23 17.912164575149287 29.694148457592444 27.106397468585712 25.28728949867256 24 19.248880879018664 21.92286716442289 43.046085360485684 15.782166596072763 25 15.047713172822178 24.372475575893983 39.77551139053377 20.804299860750067 26 14.774057986661903 35.295290140938654 30.49504320069985 19.435608671699597 27 16.23023024685719 35.06980491167457 32.32384052975879 16.376124311709454 28 13.514026039460608 28.264137467090784 42.88012048026001 15.341716013188602 29 13.593478784456053 23.882055583700836 41.86689035244352 20.65757527939959 30 17.124973354262348 30.133906943394763 34.742442991963365 17.99867671037952 31 28.533501651343634 26.229787304724812 27.155536361396486 18.081174682535067 32 30.564114489467663 26.07544965547407 28.049725791136176 15.310710063922087 33 28.487269566276602 27.286481129280965 26.496244681233925 17.730004623208508 34 18.980624050096758 27.3974935012084 30.136398492889395 23.48548395580545 35 19.949975222924472 25.8044244382248 32.421287798882126 21.824312539968606 36 30.719697913465716 24.89736200276285 27.330083245437002 17.052856838334428 37 20.10888071291536 32.46807356161464 29.64016488520878 17.782880840261225 38 19.467860395713426 33.91386436558229 24.337870721801888 22.280404516902394 39 21.376802566849655 31.55893483490716 28.493913698262286 18.5703488999809 40 23.997082118702956 26.29525968866705 25.793489304331697 23.9141688882983 41 16.63247707082368 24.39960578150218 28.14260521951935 30.825311928154786 42 22.7920026797999 25.30652979754776 24.691393911206713 27.210073611445623 43 23.084344487169904 26.597290855182838 25.786568333513276 24.53179632413398 44 18.943942904759137 32.15538410003848 28.33653082185144 20.56414217335094 45 16.60340899338632 38.6957015234441 22.60430595120439 22.096583531965198 46 21.946536884621878 33.408910334670466 25.90270222384634 18.741850556861312 47 21.5346007015096 27.84071247241993 27.68775901733288 22.936927808737586 48 23.659061903931388 23.668612843660807 31.123190512179526 21.549134740228283 49 20.620894134061974 24.111278137206863 32.3434960868831 22.924331641848063 50 18.072315839887494 34.68264580409223 26.86319455402648 20.381843801993792 51 18.208382126177604 35.31840618347217 23.658508226265916 22.814703464084314 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 266.0 1 471.0 2 676.0 3 4359.0 4 8042.0 5 6374.0 6 4706.0 7 4973.5 8 5241.0 9 5542.5 10 5844.0 11 5808.0 12 5772.0 13 5614.5 14 5457.0 15 5113.0 16 4769.0 17 4604.5 18 4440.0 19 4267.0 20 4094.0 21 4114.5 22 4135.0 23 4189.5 24 4244.0 25 4720.0 26 5821.5 27 6447.0 28 7638.0 29 8829.0 30 10453.5 31 12078.0 32 13867.5 33 15657.0 34 16559.5 35 17462.0 36 20129.0 37 22796.0 38 33472.5 39 44149.0 40 56452.5 41 68756.0 42 75223.5 43 81691.0 44 77227.5 45 72764.0 46 68294.5 47 63825.0 48 58826.5 49 53828.0 50 49440.0 51 45052.0 52 40282.5 53 35513.0 54 31259.0 55 27005.0 56 24342.5 57 21680.0 58 20538.0 59 19396.0 60 17294.0 61 15192.0 62 12703.5 63 10215.0 64 8202.5 65 6190.0 66 5131.0 67 4072.0 68 3489.5 69 2907.0 70 2404.0 71 1901.0 72 1454.5 73 1008.0 74 804.5 75 464.0 76 327.0 77 217.0 78 107.0 79 83.0 80 59.0 81 40.0 82 21.0 83 18.5 84 16.0 85 14.5 86 13.0 87 7.0 88 1.0 89 1.5 90 2.0 91 1.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 722442.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.901321530012144 #Duplication Level Percentage of deduplicated Percentage of total 1 77.43214962080624 19.28162854467704 2 5.598299719960057 2.7881012269620467 3 2.323916547997866 1.7360577951183225 4 1.4568260202692398 1.4510757257604934 5 1.119526787602923 1.3938848249780997 6 0.9008927013357567 1.3460051292001725 7 0.7280039818779717 1.2689782859510752 8 0.603169904920985 1.2015782191731441 9 0.5395228798929694 1.2091349434511658 >10 8.225279729954876 49.44818022737645 >50 1.0116569497228354 15.852661272710794 >100 0.05908299541080999 2.025182161976294 >500 0.0 0.0 >1k 0.0016721602474757543 0.9975316426649049 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 3003 0.41567350735422354 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2327 0.3221019818892036 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1857 0.2570448561960683 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.009412520313049353 0.0 2 0.0 0.0 0.0 0.044294213237879305 0.0 3 0.0 0.0 0.0 0.057997735458348215 0.0 4 0.0 0.0 0.0 0.09163365363586282 0.0 5 0.0 0.0 0.0 0.15655235991262967 0.0 6 0.0 0.0 0.0 0.2221631632712384 0.0 7 0.0 0.0 0.0 0.25856746977612044 0.0 8 0.0 0.0 0.0 0.5211491026269237 0.0 9 0.0 0.0 0.0 0.6043391718643157 0.0 10 0.0 0.0 0.0 0.7974342576981959 0.0 11 0.0 0.0 0.0 0.976825821311607 0.0 12 0.0 0.0 0.0 1.1448669927828117 0.0 13 0.0 0.0 0.0 1.2133846038851561 0.0 14 0.0 0.0 0.0 1.2362238075859378 0.0 15 0.0 0.0 0.0 1.2831479897348161 0.0 16 0.0 0.0 0.0 1.3911151345021469 0.0 17 0.0 0.0 0.0 1.5201220305574703 0.0 18 0.0 0.0 0.0 1.691900526270621 0.0 19 0.0 0.0 0.0 1.7748137566752764 0.0 20 0.0 0.0 0.0 1.8681084433075597 0.0 21 0.0 0.0 0.0 1.9888101743807807 0.0 22 0.0 0.0 0.0 2.109096647204897 0.0 23 0.0 0.0 0.0 2.2608043275446335 0.0 24 0.0 0.0 0.0 2.359497371415283 0.0 25 0.0 0.0 0.0 2.4390885358270977 0.0 26 0.0 0.0 0.0 2.5274001234701196 0.0 27 0.0 0.0 0.0 2.610867031540248 0.0 28 0.0 0.0 0.0 2.699455458016007 0.0 29 0.0 0.0 0.0 2.7902585951536594 0.0 30 0.0 0.0 0.0 2.9113755844759854 0.0 31 0.0 0.0 0.0 3.0398288028658356 0.0 32 0.0 0.0 0.0 3.1519485301242174 0.0 33 0.0 0.0 0.0 3.255763092400497 0.0 34 0.0 0.0 0.0 3.372312240982667 0.0 35 0.0 0.0 0.0 3.521943630076878 0.0 36 0.0 0.0 0.0 3.6512273649649383 0.0 37 0.0 0.0 0.0 3.7789884862729464 0.0 38 0.0 0.0 0.0 3.8995517979297993 0.0 39 0.0 0.0 0.0 4.019146173672073 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCACGAC 50 2.1827873E-11 45.000004 25 GCGAATG 30 2.1643773E-6 45.000004 1 CATGCCG 25 3.889361E-5 45.000004 37 CGTTAAG 25 3.889361E-5 45.000004 2 AACATCG 25 3.889361E-5 45.000004 19 GGAACGT 35 1.2110831E-7 45.000004 8 AACGACC 25 3.889361E-5 45.000004 29 ATGCGGC 25 3.889361E-5 45.000004 19 AATAGGC 60 0.0 45.000004 4 CCCGGTT 25 3.889361E-5 45.000004 44 TCCGACA 20 7.031546E-4 45.0 23 TAGGTTC 20 7.031546E-4 45.0 32 CGCATGA 20 7.031546E-4 45.0 38 CGTTGGC 20 7.031546E-4 45.0 30 CGGCAAC 20 7.031546E-4 45.0 8 CGACACA 20 7.031546E-4 45.0 25 TTATCGC 40 6.8084773E-9 45.0 31 CATTATC 20 7.031546E-4 45.0 17 ACGATGT 20 7.031546E-4 45.0 45 TCGTGAA 20 7.031546E-4 45.0 1 >>END_MODULE