SRR1546420_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546420_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	533224
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1680	0.3150645882405893	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1283	0.24061182542421197	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1145	0.21473151996159212	No Hit
AAGGAAAGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	642	0.12039968193479664	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGTA	30	2.163304E-6	45.000004	22
GACAACG	30	2.163304E-6	45.000004	12
CGTTATT	195	0.0	45.000004	1
CGTTAAG	65	0.0	45.000004	2
CGTAAAG	35	1.2102828E-7	45.000004	2
CGTCAAG	35	1.2102828E-7	45.000004	2
TTGGGAC	60	0.0	45.000004	5
ACGCGAT	20	7.02988E-4	45.0	26
AACGTAC	20	7.02988E-4	45.0	21
TAGCGAA	25	3.8879825E-5	45.0	1
TTCACGA	20	7.02988E-4	45.0	27
TGTATCG	20	7.02988E-4	45.0	13
TCTAGAT	20	7.02988E-4	45.0	21
CTGGTCG	25	3.8879825E-5	45.0	11
CGTTAGT	20	7.02988E-4	45.0	30
AAGCACG	20	7.02988E-4	45.0	1
TCGTCCG	20	7.02988E-4	45.0	17
GGTATCG	20	7.02988E-4	45.0	8
GTCGTAA	20	7.02988E-4	45.0	1
TCCGTTC	20	7.02988E-4	45.0	15