##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546419_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 666767 Sequences flagged as poor quality 0 Sequence length 50 %GC 45 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.54884689854177 31.0 31.0 33.0 30.0 34.0 2 31.733680581072548 31.0 31.0 34.0 30.0 34.0 3 31.798769285222573 31.0 31.0 34.0 30.0 34.0 4 35.70041258790552 37.0 35.0 37.0 35.0 37.0 5 27.055733112166617 35.0 25.0 37.0 0.0 37.0 6 31.316441875497738 35.0 26.0 37.0 17.0 37.0 7 14.996797981903724 0.0 0.0 32.0 0.0 37.0 8 25.10298200120882 17.0 17.0 35.0 17.0 37.0 9 33.256200441833506 32.0 32.0 37.0 28.0 39.0 10 36.10610603104233 37.0 35.0 39.0 32.0 39.0 11 37.07843369572879 39.0 37.0 39.0 34.0 39.0 12 36.959165645570344 39.0 35.0 39.0 33.0 39.0 13 36.39787811934304 39.0 35.0 39.0 32.0 39.0 14 37.71549581787941 40.0 36.0 41.0 33.0 41.0 15 38.017250403814224 40.0 36.0 41.0 33.0 41.0 16 38.10706438680978 40.0 36.0 41.0 34.0 41.0 17 38.149493001303306 40.0 36.0 41.0 34.0 41.0 18 38.119352037518354 40.0 36.0 41.0 34.0 41.0 19 38.03193619360286 40.0 36.0 41.0 34.0 41.0 20 38.04927808364841 40.0 36.0 41.0 34.0 41.0 21 37.91857725412326 40.0 35.0 41.0 34.0 41.0 22 37.839539149358025 40.0 35.0 41.0 33.0 41.0 23 37.74514935502207 40.0 35.0 41.0 33.0 41.0 24 37.620735579295314 39.0 35.0 41.0 33.0 41.0 25 37.43962433653735 39.0 35.0 41.0 33.0 41.0 26 37.197320803219114 39.0 35.0 40.0 33.0 41.0 27 36.96723593099239 39.0 35.0 40.0 32.0 41.0 28 37.00708943304033 39.0 35.0 40.0 32.0 41.0 29 37.0231940093016 39.0 35.0 40.0 33.0 41.0 30 36.844992328654534 38.0 35.0 40.0 32.0 41.0 31 36.64978770695011 38.0 35.0 40.0 32.0 41.0 32 36.40981482286916 38.0 35.0 40.0 31.0 41.0 33 36.22485515929853 38.0 35.0 40.0 31.0 41.0 34 36.01853271082702 38.0 35.0 40.0 30.0 41.0 35 35.887959362116 38.0 35.0 40.0 30.0 41.0 36 35.66978419747828 38.0 35.0 40.0 29.0 41.0 37 35.47805155324124 38.0 35.0 40.0 29.0 41.0 38 35.32586345754964 38.0 34.0 40.0 29.0 41.0 39 35.28761771353411 38.0 34.0 40.0 28.0 41.0 40 35.07277954667823 38.0 34.0 40.0 27.0 41.0 41 34.91374048205745 37.0 34.0 40.0 27.0 40.0 42 34.924570352162 37.0 34.0 40.0 27.0 41.0 43 34.78476289318458 37.0 34.0 40.0 26.0 41.0 44 34.574331063174995 37.0 34.0 40.0 26.0 40.0 45 34.393299308454075 37.0 34.0 40.0 26.0 40.0 46 34.35710825520759 36.0 34.0 40.0 26.0 40.0 47 34.20355986424043 36.0 33.0 39.0 25.0 40.0 48 34.176127492812334 36.0 33.0 39.0 25.0 40.0 49 34.05475375955918 36.0 33.0 39.0 24.0 40.0 50 34.14515565407406 36.0 33.0 39.0 25.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 1.0 13 2.0 14 2.0 15 5.0 16 25.0 17 85.0 18 225.0 19 446.0 20 823.0 21 1331.0 22 2289.0 23 3443.0 24 5227.0 25 7977.0 26 9973.0 27 10806.0 28 11507.0 29 13175.0 30 15964.0 31 21648.0 32 30540.0 33 58685.0 34 57936.0 35 69513.0 36 87066.0 37 165268.0 38 74968.0 39 17835.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.842558194991653 23.44717120073429 30.256896337101267 15.453374267172789 2 30.404924058929133 25.435421968993666 31.300439283887776 12.859214688189427 3 28.3185880524981 22.539357826647088 35.06502271408153 14.07703140677328 4 26.279644913440524 26.937595891818283 32.1968543734168 14.585904821324391 5 17.366936276090446 47.82420245753014 24.191659155297128 10.617202111082282 6 20.925150764809896 39.67097951758261 28.58224837162007 10.821621345987428 7 39.173204432732874 55.909485622413825 3.8655182395049543 1.051791705348345 8 87.96326152913987 3.1531254546190794 7.26550654126554 1.6181064749755163 9 84.56177345309531 4.774981365304522 8.369790346552843 2.293454835047325 10 52.95792983156035 23.595048945133755 13.519415327993137 9.927605895312755 11 48.466255828497815 19.2202073587925 19.74062903533018 12.572907777379505 12 42.56674370507238 21.125820564005117 23.42842402218466 12.879011708737833 13 21.629894700847522 41.390770689011305 23.20420776673111 13.775126843410066 14 15.538711423930698 41.815206811374885 27.613694139032074 15.032387625662338 15 13.741381922020734 23.0734274491689 49.27313439327381 13.912056235536552 16 15.34149110558861 17.86726097722293 47.285783489584816 19.505464427603645 17 16.738980783392098 18.275499537319632 29.625941295834977 35.35957838345329 18 22.150166399956806 22.4177261322171 34.04487624612496 21.387231221701132 19 29.51030869854087 23.489314858113854 25.702081836683575 21.298294606661695 20 31.993035048225245 21.667689012803574 26.035031727724977 20.304244211246207 21 22.861059410558713 26.981089346053416 27.961641772913175 22.19620947047469 22 23.64589129336035 24.849310178818087 25.333137362826896 26.17166116499467 23 20.003839422166962 29.679483237772715 26.152464054159847 24.16421328590047 24 20.827215504066636 22.32593994603812 39.45366222383531 17.39318232605993 25 17.615898807229513 24.796068191737145 36.02712791724845 21.56090508378489 26 17.051983676456693 34.504407086733444 27.53615580855081 20.907453428259046 27 19.196960857390962 32.104318300095834 30.360980672408804 18.3377401701044 28 15.695437836605592 27.79861630824561 38.83215576055804 17.673790094590764 29 16.507115679090298 24.00073788894771 37.524802517221154 21.96734391474083 30 18.960146497952056 29.958291277162786 31.454766057708316 19.626796167176842 31 28.959141649181795 26.759422706882614 24.84256119454022 19.438874449395367 32 29.923046581489487 26.825112820520513 25.859558136500453 17.392282461489547 33 26.91689900669949 27.893552020420927 25.682134838706776 19.507414134172805 34 19.72563129249048 27.85920718931801 29.550202694494477 22.864958823697034 35 21.584601517471622 25.492863324069724 30.671433949190646 22.251101209268004 36 28.62724160013918 25.69503289754892 25.87650558590932 19.801219916402584 37 21.772673212681493 31.921795769736654 28.15616249754412 18.149368520037733 38 20.94614760478548 32.042827554453055 24.47496651753911 22.536058323222356 39 21.991190325855957 30.3056390013303 26.904150925285748 20.799019747527996 40 24.25509960750907 27.12641747417014 24.50016272550981 24.118320192810984 41 17.862311722085828 24.62134448765461 27.486363302323003 30.029980487936562 42 22.137868250828248 26.442370423251297 24.015735631787415 27.404025694133033 43 23.062479096895917 27.998086288013653 25.267147294332204 23.672287320758226 44 20.67078904624854 31.450416712284802 26.617394082190632 21.26140015927603 45 17.71638368425552 36.537801060940325 22.476367306720338 23.269447948083812 46 21.36428467515639 32.66643370172789 25.07802575712355 20.891255865992168 47 22.661739408219063 27.364581630464613 27.49446208345644 22.47921687785988 48 23.707532016431525 23.412526414774575 30.65103701892865 22.228904549865245 49 20.08182768493342 25.081925170261876 31.326685333857256 23.509561810947453 50 19.78217278299616 31.657385563472694 26.865756703616107 21.69468494991504 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 175.0 1 434.5 2 694.0 3 3510.5 4 6327.0 5 4888.0 6 3449.0 7 3604.0 8 3759.0 9 3888.0 10 4017.0 11 3991.0 12 3965.0 13 3789.5 14 3614.0 15 3371.5 16 3129.0 17 3035.0 18 2941.0 19 2848.0 20 2755.0 21 2715.5 22 2676.0 23 3023.5 24 3371.0 25 4366.0 26 5361.0 27 6249.0 28 7137.0 29 8663.5 30 10190.0 31 11687.0 32 13184.0 33 15012.5 34 16841.0 35 17630.5 36 18420.0 37 21881.0 38 25342.0 39 34080.5 40 42819.0 41 52904.5 42 62990.0 43 65851.0 44 68712.0 45 65069.5 46 61427.0 47 57456.5 48 53486.0 49 50452.5 50 47419.0 51 43349.0 52 39279.0 53 36445.5 54 33612.0 55 30179.5 56 26747.0 57 25041.5 58 23336.0 59 22439.0 60 21542.0 61 18841.5 62 16141.0 63 13753.5 64 11366.0 65 9395.0 66 7424.0 67 6105.0 68 4786.0 69 4103.5 70 3421.0 71 2844.5 72 2268.0 73 1797.0 74 1326.0 75 939.5 76 553.0 77 440.0 78 327.0 79 283.0 80 239.0 81 176.5 82 114.0 83 73.0 84 32.0 85 30.5 86 29.0 87 25.5 88 22.0 89 12.0 90 2.0 91 1.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 666767.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.635253542838228 #Duplication Level Percentage of deduplicated Percentage of total 1 69.88495090570814 15.818635825795058 2 6.019910521937846 2.725244019385255 3 2.977460852746595 2.021867439473835 4 2.0481718608731576 1.854435574806828 5 1.6794975776845282 1.9007926747735973 6 1.466140302175135 1.991187448146458 7 1.3148941464476414 2.083407367078536 8 1.1547063072047727 2.090965602487558 9 1.0042299024442092 2.0457898611411935 >10 11.767673632156162 56.45178502361268 >50 0.6471975609763599 9.04792964127559 >100 0.03246131967279549 1.1384345803740092 >500 0.0013525549863664785 0.24660724875386966 >1k 0.0013525549863664785 0.5829176928955528 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1979 0.29680533079771493 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 1829 0.274308716538161 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 813 0.12193164928678234 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 798 0.11968198786082695 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.007948803705042392 0.0 2 0.0 0.0 0.0 0.03044541796459633 0.0 3 0.0 0.0 0.0 0.042143657379564374 0.0 4 0.0 0.0 0.0 0.05879115193163429 0.0 5 0.0 0.0 0.0 0.09613553160249383 0.0 6 0.0 0.0 0.0 0.1576262772452746 0.0 7 0.0 0.0 0.0 0.20186961862239733 0.0 8 0.0 0.0 0.0 0.39294086240020876 0.0 9 0.0 0.0 0.0 0.46717968945673677 0.0 10 0.0 0.0 0.0 0.6090583367203236 0.0 11 0.0 0.0 0.0 0.7638350428260546 0.0 12 0.0 0.0 0.0 0.8925156763907032 0.0 13 0.0 0.0 0.0 0.9435080020456921 0.0 14 0.0 0.0 0.0 0.9610553611681442 0.0 15 0.0 0.0 0.0 0.99405039541549 0.0 16 0.0 0.0 0.0 1.0754881390350752 0.0 17 0.0 0.0 0.0 1.1813722034833758 0.0 18 0.0 0.0 0.0 1.325950444458109 0.0 19 0.0 0.0 0.0 1.3932903098083738 0.0 20 0.0 0.0 0.0 1.4666292722945198 0.0 21 0.0 0.0 0.0 1.5560158196191474 0.0 22 0.0 0.0 0.0 1.652301328650038 0.0 23 0.0 0.0 0.0 1.77123342936888 0.0 24 0.0 0.0 0.0 1.8573204732687731 0.0 25 0.0 0.0 0.0 1.920310993195524 0.0 26 0.0 0.0 0.0 1.9970994365348016 0.0 27 0.0 0.0 0.0 2.063539437314684 0.0 28 0.0 0.0 0.0 2.143477406650299 0.0 29 0.0 0.0 0.0 2.2217656242735466 0.0 30 0.0 0.0 0.0 2.3239002530119217 0.0 31 0.0 0.0 0.0 2.424085175181135 0.0 32 0.0 0.0 0.0 2.5118219707933958 0.0 33 0.0 0.0 0.0 2.595659353267333 0.0 34 0.0 0.0 0.0 2.694794433437768 0.0 35 0.0 0.0 0.0 2.820925450719667 0.0 36 0.0 0.0 0.0 2.924259898885218 0.0 37 0.0 0.0 0.0 3.0314937601890914 0.0 38 0.0 0.0 0.0 3.130328885502732 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCACGAC 20 7.8540994E-4 44.000004 25 GCGAAGT 20 7.8540994E-4 44.000004 43 CGTGAAT 20 7.8540994E-4 44.000004 21 TTCCGTA 20 7.8540994E-4 44.000004 12 ACTTACG 20 7.8540994E-4 44.000004 1 TACGAAC 20 7.8540994E-4 44.000004 12 CGAATGC 20 7.8540994E-4 44.000004 17 CGCAGCT 20 7.8540994E-4 44.000004 31 TCCGTGC 20 7.8540994E-4 44.000004 15 CATGTAG 20 7.8540994E-4 44.000004 2 CGTTTAG 40 8.303687E-9 44.000004 2 GGTTAGT 20 7.8540994E-4 44.000004 3 ATACCGC 20 7.8540994E-4 44.000004 27 TGCACGT 20 7.8540994E-4 44.000004 38 TAATCCG 20 7.8540994E-4 44.000004 24 CGGAAAT 30 2.5261106E-6 44.0 39 TCGTTAC 25 4.440824E-5 44.0 39 GCGAATG 35 1.4448597E-7 44.0 1 TTCGTTA 25 4.440824E-5 44.0 13 TTCGTAA 30 2.5261106E-6 44.0 1 >>END_MODULE