SRR1546418_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546418_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	255847
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	679	0.26539298877844963	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	540	0.21106364350568893	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	482	0.18839384475878163	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTTGCG	20	7.022994E-4	45.0	1
ACTATGC	20	7.022994E-4	45.0	8
CGGAAAG	20	7.022994E-4	45.0	2
ACACGTG	20	7.022994E-4	45.0	42
CGTGCGG	25	3.8822775E-5	45.0	2
AGCCATT	20	7.022994E-4	45.0	40
GATCATG	20	7.022994E-4	45.0	10
GTCTAAT	20	7.022994E-4	45.0	19
CGATTGT	20	7.022994E-4	45.0	12
TGAAACT	20	7.022994E-4	45.0	27
CTTATGG	25	3.8822775E-5	45.0	2
CATAGGT	20	7.022994E-4	45.0	4
CTACGGG	20	7.022994E-4	45.0	3
AGCATAT	40	6.7793735E-9	45.0	31
CGCTAGG	20	7.022994E-4	45.0	3
CGGGATA	20	7.022994E-4	45.0	6
CCTGGTT	40	6.7793735E-9	45.0	12
ACTTTGC	20	7.022994E-4	45.0	39
CGTTTTA	385	0.0	45.0	1
AATACGA	20	7.022994E-4	45.0	27