##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546418_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 255847 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.031432848538383 31.0 31.0 33.0 30.0 33.0 2 31.168925177938377 31.0 31.0 33.0 30.0 34.0 3 31.14010326484188 31.0 31.0 34.0 28.0 34.0 4 35.114822530653086 35.0 35.0 37.0 33.0 37.0 5 32.80732234499525 35.0 35.0 37.0 28.0 37.0 6 33.98932956024499 35.0 35.0 37.0 28.0 37.0 7 15.257298307191407 0.0 0.0 35.0 0.0 37.0 8 24.890813650345713 17.0 17.0 35.0 17.0 37.0 9 32.73617435420388 32.0 32.0 37.0 27.0 39.0 10 35.53884157328403 37.0 35.0 37.0 32.0 39.0 11 36.508643837918754 37.0 35.0 39.0 32.0 39.0 12 36.280949161022015 37.0 35.0 39.0 32.0 39.0 13 35.865599362118765 37.0 35.0 39.0 31.0 39.0 14 36.88908605533776 39.0 35.0 40.0 31.0 41.0 15 37.28321223231072 39.0 35.0 41.0 32.0 41.0 16 37.38490973120654 39.0 35.0 41.0 32.0 41.0 17 37.37196058581887 39.0 35.0 41.0 32.0 41.0 18 37.275043287589845 39.0 35.0 41.0 32.0 41.0 19 37.17891552373098 39.0 35.0 40.0 32.0 41.0 20 37.270630494006184 39.0 35.0 40.0 32.0 41.0 21 37.139993824434136 39.0 35.0 40.0 32.0 41.0 22 37.18553275981348 39.0 35.0 41.0 32.0 41.0 23 37.170082119391665 39.0 35.0 41.0 32.0 41.0 24 37.02763761154127 39.0 35.0 41.0 32.0 41.0 25 36.763557907655745 38.0 35.0 40.0 31.0 41.0 26 36.63222550977733 38.0 35.0 40.0 31.0 41.0 27 36.518403577137896 38.0 35.0 40.0 31.0 41.0 28 36.45660101545064 38.0 35.0 40.0 31.0 41.0 29 36.534260710502764 38.0 35.0 40.0 31.0 41.0 30 36.28274711057781 38.0 35.0 40.0 30.0 41.0 31 36.15490507998921 38.0 35.0 40.0 30.0 41.0 32 36.05025269008431 38.0 35.0 40.0 30.0 41.0 33 35.878591501952336 38.0 34.0 40.0 30.0 41.0 34 35.723819313886814 38.0 34.0 40.0 29.0 41.0 35 35.56577954793294 38.0 34.0 40.0 28.0 41.0 36 35.345436921284985 38.0 34.0 40.0 27.0 41.0 37 35.16628297380856 38.0 34.0 40.0 26.0 41.0 38 35.11665956606878 38.0 34.0 40.0 26.0 41.0 39 35.04019589832986 38.0 34.0 40.0 26.0 41.0 40 34.89965487185701 38.0 34.0 40.0 25.0 41.0 41 34.771078027102135 38.0 34.0 40.0 24.0 41.0 42 34.750389881452584 38.0 34.0 40.0 24.0 41.0 43 34.66083245064433 37.0 33.0 40.0 24.0 41.0 44 34.3421849777406 37.0 33.0 40.0 23.0 41.0 45 34.29567280444954 37.0 33.0 40.0 23.0 41.0 46 34.302278314774064 37.0 33.0 40.0 23.0 41.0 47 34.27815843062455 37.0 33.0 40.0 23.0 41.0 48 34.28103905849981 37.0 33.0 40.0 23.0 41.0 49 34.20931259698179 36.0 33.0 40.0 24.0 41.0 50 34.091730604619165 36.0 33.0 40.0 24.0 41.0 51 33.909789835331274 36.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 8.0 15 13.0 16 21.0 17 100.0 18 145.0 19 296.0 20 522.0 21 771.0 22 1232.0 23 1879.0 24 2695.0 25 3437.0 26 4296.0 27 4629.0 28 5083.0 29 5926.0 30 7416.0 31 9613.0 32 12869.0 33 19641.0 34 25238.0 35 26109.0 36 29281.0 37 44609.0 38 41935.0 39 8083.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.27082592330573 24.178512939373924 30.59015739875785 14.9605037385625 2 29.858860959870547 25.35030701942958 31.99099461787709 12.799837402822781 3 29.063463710733366 22.209758175784746 34.60544778715404 14.121330326327843 4 26.76130656212502 27.67122538079399 30.898544833435608 14.668923223645383 5 21.188053797777577 36.30060153138399 29.28429881921617 13.22704585162226 6 20.914061919819265 40.24827338213854 28.185986155788424 10.65167854225377 7 38.09542421838052 57.0434673848042 4.099715845798466 0.7613925510168186 8 88.53299042005574 3.273440767333602 6.662184821397163 1.5313839912134986 9 84.97109600659769 4.892377084742053 7.807791375314152 2.3287355333461015 10 52.97619280272976 24.178512939373924 13.018718218310163 9.82657603958616 11 48.76430053899401 19.548401974617644 19.212654438003963 12.474643048384387 12 42.729834627726724 21.577348962465848 22.99733825294023 12.69547815686719 13 21.793102909160552 42.01495425000098 22.455608234608963 13.736334606229505 14 15.28960667899174 42.38978764652312 27.308508600843474 15.01209707364167 15 13.712883090284429 23.435881601113167 49.08363201444613 13.767603294156272 16 15.246612233092435 18.172970564438902 46.93586401247621 19.644553189992457 17 16.535663892873476 18.76043103886307 29.300714880377726 35.40319018788573 18 22.071394231708794 22.574429248730688 33.93668872412027 21.417487795440245 19 29.980808842784946 23.489038370588673 25.302231411742177 21.22792137488421 20 32.4885576145118 21.91935023666488 25.65478586811649 19.937306280706828 21 22.713184051405726 27.745488514620064 27.477359515648025 22.06396791832619 22 23.318233162788697 25.249465500865753 24.70578118953906 26.726520146806486 23 19.85522597489906 30.166466677350133 25.828327086110058 24.149980261640746 24 20.382885083663282 22.679961070483532 39.87226740981915 17.064886436034037 25 17.429166650380893 25.162304033269884 36.20992233639636 21.198606979952864 26 16.786204254886712 35.32228245787522 27.123632483476452 20.767880803761624 27 19.051620695181104 33.40824789815788 29.529367160842224 18.010764245818788 28 15.514741232064477 28.42401904263095 38.447587816155746 17.613651909148828 29 16.376975301645125 24.335638096205937 37.352402021520675 21.934984580628267 30 19.024651451844264 30.766043768345924 30.816073669028754 19.393231110781052 31 29.324166396322802 27.022009247714458 24.58696017541734 19.066864180545405 32 30.594847701946865 26.535781150453204 25.77243430644096 17.096936841158975 33 27.709920382103366 27.849847760575656 25.130644486744032 19.309587370576946 34 19.877504915046885 27.85141119497199 28.936043807431783 23.335040082549334 35 21.775514272201747 25.21702423714173 30.804738769655305 22.202722721001223 36 29.092778105664713 26.089811488897663 25.514467631045118 19.30294277439251 37 21.630505731941355 32.9075580327305 27.706402654711603 17.75553358061654 38 20.691663376940124 32.87120818301563 24.256684659190846 22.180443780853402 39 21.96312639976236 30.946620441123013 26.65929246776394 20.43096069135069 40 24.717116088912512 27.01223778273734 24.282872185329513 23.98777394302063 41 17.76061474240464 24.80584099090472 27.285838802096567 30.147705464594072 42 21.639886338319386 26.36380336685597 23.91820111238357 28.078109182441068 43 22.73311783995904 27.66770765340223 25.333109241069856 24.266065265568876 44 20.066680477003835 31.770159509394286 26.912177981371677 21.2509820322302 45 17.567139735857758 37.30549898963052 22.34225924087443 22.78510203363729 46 21.01803030717577 33.39495870578901 24.738613311862167 20.848397675173054 47 22.357502726238728 27.498856738597677 27.219392840252183 22.92424769491141 48 23.22520881620656 23.815796159423407 31.09319241577974 21.86580260859029 49 20.090522851547995 25.501569297275324 31.61068920096777 22.797218650208915 50 19.893530117609355 32.6054243356381 26.351686750284347 21.149358796468203 51 18.325796276680986 34.20286343009689 24.36729764273179 23.104042650490335 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 78.0 1 171.0 2 264.0 3 1150.0 4 2036.0 5 1612.0 6 1188.0 7 1177.5 8 1167.0 9 1266.5 10 1366.0 11 1321.0 12 1276.0 13 1233.5 14 1191.0 15 1165.0 16 1139.0 17 1100.0 18 1061.0 19 1035.5 20 1010.0 21 972.5 22 935.0 23 1040.5 24 1146.0 25 1497.5 26 2173.5 27 2498.0 28 3095.0 29 3692.0 30 4217.5 31 4743.0 32 5508.5 33 6274.0 34 6823.0 35 7372.0 36 8022.0 37 8672.0 38 11709.0 39 14746.0 40 18507.5 41 22269.0 42 24221.0 43 26173.0 44 24864.5 45 23556.0 46 22294.0 47 21032.0 48 19886.0 49 18740.0 50 17297.0 51 15854.0 52 14603.0 53 13352.0 54 12205.5 55 11059.0 56 10333.0 57 9607.0 58 8995.0 59 8383.0 60 7724.5 61 7066.0 62 6052.5 63 5039.0 64 4234.0 65 3429.0 66 2893.5 67 2358.0 68 1962.0 69 1566.0 70 1325.5 71 1085.0 72 884.0 73 683.0 74 553.5 75 319.5 76 215.0 77 153.5 78 92.0 79 92.0 80 92.0 81 67.5 82 43.0 83 24.5 84 6.0 85 9.0 86 12.0 87 9.5 88 7.0 89 4.0 90 1.0 91 1.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 255847.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.82644314766247 #Duplication Level Percentage of deduplicated Percentage of total 1 65.83074410207917 20.95158434533139 2 7.970329251968021 5.073344616118227 3 4.602895845358419 4.394814088107346 4 3.325678214842743 4.233780345284487 5 2.5040834121360236 3.98480341766759 6 2.1405676249892545 4.087599229226843 7 1.820035123484839 4.054767106903736 8 1.5793287238876539 4.021153267382458 9 1.4737126505950116 4.221272870113779 >10 8.718238422144989 43.4568316220241 >50 0.022105689758925174 0.43619819657842385 >100 0.009824751003966743 0.6073942629774827 >500 0.002456187750991686 0.4764566322841386 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 679 0.26539298877844963 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 540 0.21106364350568893 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 482 0.18839384475878163 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.010553182175284448 0.0 2 0.0 0.0 0.0 0.04182187010205318 0.0 3 0.0 0.0 0.0 0.050420759281914584 0.0 4 0.0 0.0 0.0 0.06918197203797583 0.0 5 0.0 0.0 0.0 0.10983126634277518 0.0 6 0.0 0.0 0.0 0.15556172243567445 0.0 7 0.0 0.0 0.0 0.18487611736702014 0.0 8 0.0 0.0 0.0 0.3482550117843868 0.0 9 0.0 0.0 0.0 0.40688380164707816 0.0 10 0.0 0.0 0.0 0.5268773915660532 0.0 11 0.0 0.0 0.0 0.6523430018722127 0.0 12 0.0 0.0 0.0 0.7735091675884416 0.0 13 0.0 0.0 0.0 0.818067047884087 0.0 14 0.0 0.0 0.0 0.834092250446556 0.0 15 0.0 0.0 0.0 0.8684878071660016 0.0 16 0.0 0.0 0.0 0.9376697792039774 0.0 17 0.0 0.0 0.0 1.0396838735650604 0.0 18 0.0 0.0 0.0 1.1706215042584045 0.0 19 0.0 0.0 0.0 1.2249508495311652 0.0 20 0.0 0.0 0.0 1.2886608011819565 0.0 21 0.0 0.0 0.0 1.380121713367755 0.0 22 0.0 0.0 0.0 1.4739277771480612 0.0 23 0.0 0.0 0.0 1.5810230332972441 0.0 24 0.0 0.0 0.0 1.6552861671233199 0.0 25 0.0 0.0 0.0 1.7244681391612957 0.0 26 0.0 0.0 0.0 1.7885689494111716 0.0 27 0.0 0.0 0.0 1.8425074360848477 0.0 28 0.0 0.0 0.0 1.9046539533393005 0.0 29 0.0 0.0 0.0 1.9800896629626301 0.0 30 0.0 0.0 0.0 2.062169968770398 0.0 31 0.0 0.0 0.0 2.1485497191680967 0.0 32 0.0 0.0 0.0 2.228284873381357 0.0 33 0.0 0.0 0.0 2.317400633972648 0.0 34 0.0 0.0 0.0 2.4237141729236615 0.0 35 0.0 0.0 0.0 2.5386266010545366 0.0 36 0.0 0.0 0.0 2.627351503046743 0.0 37 0.0 0.0 0.0 2.7227210012233876 0.0 38 0.0 0.0 0.0 2.8008927210403094 0.0 39 0.0 0.0 0.0 2.898216512212377 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTTTGCG 20 7.022994E-4 45.0 1 ACTATGC 20 7.022994E-4 45.0 8 CGGAAAG 20 7.022994E-4 45.0 2 ACACGTG 20 7.022994E-4 45.0 42 CGTGCGG 25 3.8822775E-5 45.0 2 AGCCATT 20 7.022994E-4 45.0 40 GATCATG 20 7.022994E-4 45.0 10 GTCTAAT 20 7.022994E-4 45.0 19 CGATTGT 20 7.022994E-4 45.0 12 TGAAACT 20 7.022994E-4 45.0 27 CTTATGG 25 3.8822775E-5 45.0 2 CATAGGT 20 7.022994E-4 45.0 4 CTACGGG 20 7.022994E-4 45.0 3 AGCATAT 40 6.7793735E-9 45.0 31 CGCTAGG 20 7.022994E-4 45.0 3 CGGGATA 20 7.022994E-4 45.0 6 CCTGGTT 40 6.7793735E-9 45.0 12 ACTTTGC 20 7.022994E-4 45.0 39 CGTTTTA 385 0.0 45.0 1 AATACGA 20 7.022994E-4 45.0 27 >>END_MODULE