SRR1546416_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546416_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	654418
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2749	0.42006790766757635	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2020	0.3086712162562766	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1671	0.2553413873090288	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGATA	20	7.0310564E-4	45.000004	1
CACGGTA	20	7.0310564E-4	45.000004	35
ACGTTAT	20	7.0310564E-4	45.000004	26
TAGACGC	20	7.0310564E-4	45.000004	12
TGGACGA	20	7.0310564E-4	45.000004	1
CGCATGA	20	7.0310564E-4	45.000004	32
ATTACGT	20	7.0310564E-4	45.000004	39
GGCAACG	20	7.0310564E-4	45.000004	1
TACTGTT	20	7.0310564E-4	45.000004	37
CGAGGTA	20	7.0310564E-4	45.000004	5
AGACCGC	20	7.0310564E-4	45.000004	30
GTACTCG	20	7.0310564E-4	45.000004	23
ACTCGAC	20	7.0310564E-4	45.000004	25
TCATCGC	20	7.0310564E-4	45.000004	44
CTCGACT	20	7.0310564E-4	45.000004	26
ATACGCA	20	7.0310564E-4	45.000004	29
GCGCTAC	20	7.0310564E-4	45.000004	15
GCCCGGA	20	7.0310564E-4	45.000004	12
GTACGAC	20	7.0310564E-4	45.000004	35
GACTAAC	20	7.0310564E-4	45.000004	9