##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546416_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 654418 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.058873686237238 31.0 31.0 33.0 30.0 34.0 2 31.217779767671427 31.0 31.0 33.0 30.0 34.0 3 31.107246438820447 31.0 31.0 34.0 28.0 34.0 4 35.060806701527156 35.0 35.0 37.0 32.0 37.0 5 32.82588804097687 35.0 35.0 37.0 28.0 37.0 6 34.01827272477224 35.0 35.0 37.0 28.0 37.0 7 15.381532904046038 0.0 0.0 35.0 0.0 37.0 8 24.99210137862956 17.0 17.0 35.0 17.0 37.0 9 32.88713330012316 32.0 32.0 37.0 28.0 39.0 10 35.61954591713553 37.0 35.0 37.0 32.0 39.0 11 36.564145546118844 37.0 35.0 39.0 33.0 39.0 12 36.284979936370945 37.0 35.0 39.0 32.0 39.0 13 35.80706062486056 37.0 35.0 39.0 31.0 39.0 14 36.81007398940738 39.0 35.0 40.0 31.0 41.0 15 37.24764141573123 39.0 35.0 41.0 32.0 41.0 16 37.37827046322076 39.0 35.0 41.0 32.0 41.0 17 37.37845077610946 39.0 35.0 41.0 32.0 41.0 18 37.2659263651061 39.0 35.0 40.0 32.0 41.0 19 37.14149060692096 39.0 35.0 40.0 32.0 41.0 20 37.21187986883001 39.0 35.0 40.0 32.0 41.0 21 37.058300657989236 39.0 35.0 40.0 32.0 41.0 22 37.07610731978644 39.0 35.0 40.0 32.0 41.0 23 37.055203249299375 38.0 35.0 40.0 32.0 41.0 24 36.890528683501984 38.0 35.0 40.0 32.0 41.0 25 36.6399594754423 38.0 35.0 40.0 31.0 41.0 26 36.491846190049785 38.0 35.0 40.0 31.0 41.0 27 36.394969270405156 38.0 35.0 40.0 31.0 41.0 28 36.38095834772271 38.0 35.0 40.0 31.0 41.0 29 36.44416412751483 38.0 35.0 40.0 31.0 41.0 30 36.181883750141346 38.0 35.0 40.0 30.0 41.0 31 36.01092115436923 38.0 35.0 40.0 30.0 41.0 32 35.82914284142551 38.0 34.0 40.0 30.0 41.0 33 35.54164463691402 38.0 34.0 40.0 29.0 41.0 34 35.333348104728174 38.0 34.0 40.0 27.0 41.0 35 35.119550501361516 38.0 34.0 40.0 26.0 41.0 36 34.86743793722055 38.0 34.0 40.0 24.0 41.0 37 34.66912126500188 38.0 34.0 40.0 24.0 41.0 38 34.6408488152832 38.0 34.0 40.0 24.0 41.0 39 34.55216696362264 37.0 33.0 40.0 23.0 41.0 40 34.3964835930552 37.0 33.0 40.0 23.0 41.0 41 34.28799482899309 37.0 33.0 40.0 23.0 41.0 42 34.23977335586735 37.0 33.0 40.0 23.0 41.0 43 34.11972011772292 37.0 33.0 40.0 23.0 41.0 44 33.820148590044894 37.0 33.0 40.0 21.0 41.0 45 33.78773658426266 37.0 33.0 40.0 21.0 41.0 46 33.80149690259131 36.0 33.0 40.0 22.0 41.0 47 33.769387455724015 36.0 33.0 40.0 22.0 41.0 48 33.799278137215055 36.0 33.0 40.0 22.0 41.0 49 33.741776662622364 36.0 33.0 40.0 21.0 41.0 50 33.584200006723535 36.0 33.0 40.0 20.0 41.0 51 33.38876834072413 36.0 33.0 40.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 3.0 12 0.0 13 8.0 14 10.0 15 18.0 16 65.0 17 181.0 18 420.0 19 819.0 20 1427.0 21 2302.0 22 3661.0 23 5538.0 24 8237.0 25 11396.0 26 13250.0 27 13401.0 28 14055.0 29 15419.0 30 18704.0 31 24632.0 32 33065.0 33 51582.0 34 65713.0 35 65787.0 36 70675.0 37 110177.0 38 104135.0 39 19738.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.4658765498504 23.908419389442223 29.70272822569061 16.922975835016764 2 32.171639533142425 24.085828935023184 31.17044457823593 12.572086953598467 3 26.981226066520176 23.145298570638335 36.55614607177675 13.317329291064734 4 24.62050249229086 27.93612033898823 33.01284500120718 14.430532167513729 5 20.676387263186527 36.09329205492514 30.95697245491414 12.273348226974196 6 20.627947275288882 38.73869606276111 30.016289282996496 10.617067378953513 7 36.94794458587631 56.8112429670333 5.555623470014578 0.6851889770758139 8 86.81622449260259 3.126136506025201 8.664339917300563 1.3932990840716484 9 83.39425260307632 4.119538276758891 10.227408170313163 2.258800949851624 10 54.534105113245666 21.9893095850053 15.130237860205556 8.346347441543479 11 50.70306745841343 18.233300428777937 20.498519295007167 10.565112817801467 12 43.64993016695751 20.835765519897066 24.05129443261035 11.46300988053507 13 20.69075117126974 43.83711939463768 23.736969337640467 11.735160096452114 14 13.59268846517058 44.56937309181593 28.97154418124196 12.866394261771527 15 11.523063240925524 22.6550920054155 54.30351854625025 11.51832620740872 16 13.319774211589536 16.42787942874432 51.647418011118276 18.60492834854787 17 14.427476016857726 16.781017637045437 31.489659514255415 37.301846831841424 18 20.532289759755997 21.478474002854444 36.99669018883955 20.99254604855001 19 28.740957614246554 23.089676628699088 27.92083958570822 20.248526171346143 20 32.095846996873554 21.46074832904963 26.536556146071778 19.906848528005035 21 21.5368464803841 27.341240613797297 29.580329391917704 21.5415835139009 22 21.723730092998665 24.40810002169867 27.576717021842306 26.291452863460357 23 18.093939958864212 29.850187494842746 27.392583944818146 24.663288601474896 24 19.199044036074802 21.80838546616994 42.460629139174046 16.53194135858121 25 15.012423252416651 24.42246392978188 39.98423026261503 20.58088255518644 26 15.160799366765584 36.13623097164198 29.955777500007642 18.747192161584795 27 16.602996861333278 34.35205021866758 32.0324318707615 17.012521049237645 28 13.184539545061414 28.21728619934048 42.83592443973118 15.762249815866921 29 14.042401034201383 23.87159277403739 42.01275026053684 20.073255931224384 30 17.003658212335235 29.674458832122593 34.46421094774288 18.857672007799298 31 28.73026108695054 26.545418982974184 26.18250109257386 18.541818837501413 32 29.82451582933232 26.977711493265772 27.9005161838458 15.297256493556105 33 26.847061052721656 27.80256655532091 27.3430743041909 18.007298087766536 34 18.286630257725182 28.87298332258587 29.558172299661685 23.282214120027263 35 20.202989526571702 25.887582554269596 32.171639533142425 21.737788386016277 36 29.408573725050353 24.221674831682503 27.71149326577203 18.658258177495117 37 20.240121757042136 31.890320865257372 29.766907389466674 18.10264998823382 38 19.70254485665125 32.35485576496979 25.52267816594287 22.41992121243609 39 19.802480983102544 31.627033486242738 28.73927673138575 19.831208799268968 40 23.755764664174887 26.534111225546976 25.840670641699955 23.869453468578186 41 16.711795824686973 24.19630878123768 28.183210119526052 30.908685274549295 42 22.11124999617981 25.09053846318408 24.750694510236578 28.047517030399533 43 22.42282455555929 27.01789987439221 26.43249421623488 24.126781353813616 44 20.036887738417953 31.799247575708495 28.41593599198066 19.747928693892895 45 16.411834637800304 38.59979401544579 22.719423976724357 22.268947370029554 46 21.425144173907196 33.6992564385454 26.10793101656739 18.767668370980015 47 21.858200721862787 27.819986614060127 27.58282932315431 22.738983340922776 48 23.008230213716615 23.338294484564912 30.39922496019364 23.254250341524834 49 20.203142334104502 23.35785384876333 33.68367007019978 22.755333746932386 50 18.477181251126957 33.823794577777505 26.94027364772974 20.758750523365798 51 17.31981699769872 35.65473443578875 24.549294182005994 22.47615438450654 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 249.0 1 383.0 2 517.0 3 3709.5 4 6902.0 5 5440.0 6 3978.0 7 4210.0 8 4442.0 9 4763.5 10 5085.0 11 5027.5 12 4970.0 13 4854.5 14 4739.0 15 4524.0 16 4309.0 17 4065.0 18 3821.0 19 3631.0 20 3441.0 21 3543.5 22 3646.0 23 3712.0 24 3778.0 25 4163.5 26 5048.5 27 5548.0 28 6555.5 29 7563.0 30 8844.0 31 10125.0 32 12130.0 33 14135.0 34 15386.0 35 16637.0 36 19507.0 37 22377.0 38 31104.0 39 39831.0 40 51648.5 41 63466.0 42 69209.5 43 74953.0 44 70836.0 45 66719.0 46 62346.5 47 57974.0 48 54503.0 49 51032.0 50 47017.0 51 43002.0 52 37867.5 53 32733.0 54 29038.5 55 25344.0 56 22694.5 57 20045.0 58 17849.0 59 15653.0 60 13743.0 61 11833.0 62 9982.0 63 8131.0 64 6590.0 65 5049.0 66 4152.5 67 3256.0 68 2570.5 69 1885.0 70 1486.5 71 1088.0 72 882.5 73 677.0 74 535.5 75 331.5 76 269.0 77 195.0 78 121.0 79 98.5 80 76.0 81 59.5 82 43.0 83 33.5 84 24.0 85 14.0 86 4.0 87 3.0 88 2.0 89 1.0 90 0.0 91 1.0 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 654418.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.794496667186994 #Duplication Level Percentage of deduplicated Percentage of total 1 76.8713717682538 19.82858342878315 2 5.780461094058749 2.98208168851005 3 2.5649835259293408 1.984873770329218 4 1.5687356282094438 1.6185898373418397 5 1.1381723954999823 1.4679292031204265 6 0.9598024698274942 1.4854572965473887 7 0.7440527603848954 1.3434726513571629 8 0.6285651946741317 1.2970818255305308 9 0.5981700399031663 1.3886545590624002 >10 8.276398827894482 50.70859422984818 >50 0.811254921423249 13.016528467749788 >100 0.05625490331037128 1.8944824166901428 >500 0.0 0.0 >1k 0.0017764706308538297 0.9836706251297687 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 2749 0.42006790766757635 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2020 0.3086712162562766 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1671 0.2553413873090288 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.014058293017612597 0.0 2 0.0 0.0 0.0 0.06799935209606092 0.0 3 0.0 0.0 0.0 0.08541941083527653 0.0 4 0.0 0.0 0.0 0.12239883377290967 0.0 5 0.0 0.0 0.0 0.1937599515905736 0.0 6 0.0 0.0 0.0 0.2664963372034388 0.0 7 0.0 0.0 0.0 0.31142175184667903 0.0 8 0.0 0.0 0.0 0.599311143642137 0.0 9 0.0 0.0 0.0 0.7061236090694327 0.0 10 0.0 0.0 0.0 0.9101216653576155 0.0 11 0.0 0.0 0.0 1.1543081027722342 0.0 12 0.0 0.0 0.0 1.3642656528396224 0.0 13 0.0 0.0 0.0 1.4544220971917032 0.0 14 0.0 0.0 0.0 1.488803792071734 0.0 15 0.0 0.0 0.0 1.545953809338985 0.0 16 0.0 0.0 0.0 1.6845502415887093 0.0 17 0.0 0.0 0.0 1.8434700757008518 0.0 18 0.0 0.0 0.0 2.06473538319545 0.0 19 0.0 0.0 0.0 2.174145576680348 0.0 20 0.0 0.0 0.0 2.274387318197238 0.0 21 0.0 0.0 0.0 2.4091635621269587 0.0 22 0.0 0.0 0.0 2.5719035845591045 0.0 23 0.0 0.0 0.0 2.749771552738464 0.0 24 0.0 0.0 0.0 2.877518650159378 0.0 25 0.0 0.0 0.0 2.989220956636278 0.0 26 0.0 0.0 0.0 3.095574999465174 0.0 27 0.0 0.0 0.0 3.193219012924461 0.0 28 0.0 0.0 0.0 3.294530407170952 0.0 29 0.0 0.0 0.0 3.4054686759838515 0.0 30 0.0 0.0 0.0 3.540550534979172 0.0 31 0.0 0.0 0.0 3.670436937859289 0.0 32 0.0 0.0 0.0 3.792377349033798 0.0 33 0.0 0.0 0.0 3.911108802019504 0.0 34 0.0 0.0 0.0 4.03992555217002 0.0 35 0.0 0.0 0.0 4.199915039011763 0.0 36 0.0 0.0 0.0 4.334385667875884 0.0 37 0.0 0.0 0.0 4.4641192632232 0.0 38 0.0 0.0 0.0 4.593700051037716 0.0 39 0.0 0.0 0.0 4.726184181975435 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTCGATA 20 7.0310564E-4 45.000004 1 CACGGTA 20 7.0310564E-4 45.000004 35 ACGTTAT 20 7.0310564E-4 45.000004 26 TAGACGC 20 7.0310564E-4 45.000004 12 TGGACGA 20 7.0310564E-4 45.000004 1 CGCATGA 20 7.0310564E-4 45.000004 32 ATTACGT 20 7.0310564E-4 45.000004 39 GGCAACG 20 7.0310564E-4 45.000004 1 TACTGTT 20 7.0310564E-4 45.000004 37 CGAGGTA 20 7.0310564E-4 45.000004 5 AGACCGC 20 7.0310564E-4 45.000004 30 GTACTCG 20 7.0310564E-4 45.000004 23 ACTCGAC 20 7.0310564E-4 45.000004 25 TCATCGC 20 7.0310564E-4 45.000004 44 CTCGACT 20 7.0310564E-4 45.000004 26 ATACGCA 20 7.0310564E-4 45.000004 29 GCGCTAC 20 7.0310564E-4 45.000004 15 GCCCGGA 20 7.0310564E-4 45.000004 12 GTACGAC 20 7.0310564E-4 45.000004 35 GACTAAC 20 7.0310564E-4 45.000004 9 >>END_MODULE