SRR1546414_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546414_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	611826
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1976	0.3229676411267256	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1651	0.2698479633098299	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1296	0.21182493061752852	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGTACA	20	7.030696E-4	45.000004	7
GATCGCC	20	7.030696E-4	45.000004	27
GATCGAT	20	7.030696E-4	45.000004	45
CGAAACG	20	7.030696E-4	45.000004	45
ACCGCAA	20	7.030696E-4	45.000004	32
TAGCGGA	20	7.030696E-4	45.000004	1
TAGCGCG	20	7.030696E-4	45.000004	1
CACGCTA	20	7.030696E-4	45.000004	42
ATATGCG	20	7.030696E-4	45.000004	1
CGAATAT	20	7.030696E-4	45.000004	14
CGTACCA	20	7.030696E-4	45.000004	20
CGTACAG	35	1.210683E-7	45.000004	2
CACAACG	20	7.030696E-4	45.000004	12
TTTCTAC	20	7.030696E-4	45.000004	41
GTGGTAC	20	7.030696E-4	45.000004	32
AATCGGC	20	7.030696E-4	45.000004	10
TACGTAA	20	7.030696E-4	45.000004	1
ATCGAAA	20	7.030696E-4	45.000004	43
AATCGAA	20	7.030696E-4	45.000004	42
AACGTCC	25	3.888659E-5	45.0	21