##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546414_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 611826 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.025886444838893 31.0 31.0 33.0 30.0 33.0 2 31.16392078793644 31.0 31.0 33.0 30.0 34.0 3 31.104222442328375 31.0 31.0 34.0 28.0 34.0 4 35.08228483261581 35.0 35.0 37.0 32.0 37.0 5 32.80598732319319 35.0 35.0 37.0 28.0 37.0 6 33.993454021241334 35.0 35.0 37.0 28.0 37.0 7 15.219833743580692 0.0 0.0 35.0 0.0 37.0 8 24.87913230232125 17.0 17.0 35.0 17.0 37.0 9 32.71185761965003 32.0 32.0 37.0 27.0 39.0 10 35.551305436513 37.0 35.0 37.0 32.0 39.0 11 36.4990765348318 37.0 35.0 39.0 32.0 39.0 12 36.24295306181823 37.0 35.0 39.0 32.0 39.0 13 35.79222033715468 37.0 35.0 39.0 31.0 39.0 14 36.80418942640555 39.0 35.0 40.0 31.0 41.0 15 37.25290850666693 39.0 35.0 41.0 32.0 41.0 16 37.35408596561768 39.0 35.0 41.0 32.0 41.0 17 37.31679758624184 39.0 35.0 41.0 32.0 41.0 18 37.18395099260247 39.0 35.0 40.0 32.0 41.0 19 37.11823132720741 39.0 35.0 40.0 32.0 41.0 20 37.19136976852896 39.0 35.0 40.0 32.0 41.0 21 37.03135858887985 39.0 35.0 40.0 32.0 41.0 22 37.08352374694766 39.0 35.0 40.0 32.0 41.0 23 37.071659262600804 39.0 35.0 40.0 32.0 41.0 24 36.910231013392696 38.0 35.0 40.0 32.0 41.0 25 36.6549966820632 38.0 35.0 40.0 31.0 41.0 26 36.48747356274497 38.0 35.0 40.0 31.0 41.0 27 36.36786112391432 38.0 35.0 40.0 31.0 41.0 28 36.3181476432842 38.0 35.0 40.0 31.0 41.0 29 36.390140334016536 38.0 35.0 40.0 31.0 41.0 30 36.15711493136938 38.0 35.0 40.0 30.0 41.0 31 35.99762514178868 38.0 34.0 40.0 30.0 41.0 32 35.84567507755473 38.0 34.0 40.0 30.0 41.0 33 35.626017854749556 38.0 34.0 40.0 29.0 41.0 34 35.471524583786895 38.0 34.0 40.0 27.0 41.0 35 35.25300820821606 38.0 34.0 40.0 27.0 41.0 36 35.051988637292304 38.0 34.0 40.0 25.0 41.0 37 34.874227312994215 38.0 34.0 40.0 25.0 41.0 38 34.822925145384474 38.0 34.0 40.0 25.0 41.0 39 34.72851921951666 38.0 34.0 40.0 24.0 41.0 40 34.570778293174854 37.0 33.0 40.0 23.0 41.0 41 34.4706926479097 37.0 33.0 40.0 23.0 41.0 42 34.43521360648289 37.0 33.0 40.0 23.0 41.0 43 34.36181855625619 37.0 33.0 40.0 23.0 41.0 44 34.13252951002409 37.0 33.0 40.0 23.0 41.0 45 34.05451549950476 37.0 33.0 40.0 23.0 41.0 46 34.043621879423235 36.0 33.0 40.0 23.0 41.0 47 34.00578595875298 36.0 33.0 40.0 23.0 41.0 48 33.98016429507736 36.0 33.0 40.0 23.0 41.0 49 33.907308613886954 36.0 33.0 40.0 23.0 41.0 50 33.77752498259309 36.0 33.0 40.0 23.0 41.0 51 33.56291821530958 36.0 33.0 40.0 22.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 0.0 14 11.0 15 25.0 16 90.0 17 203.0 18 384.0 19 800.0 20 1271.0 21 2108.0 22 3210.0 23 4896.0 24 7067.0 25 9479.0 26 11168.0 27 12148.0 28 12956.0 29 14857.0 30 18120.0 31 23493.0 32 31581.0 33 48452.0 34 61147.0 35 61276.0 36 68395.0 37 104453.0 38 96042.0 39 18192.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.262077780283935 25.157642859244294 29.608908415137634 15.971370945334131 2 31.701660275960812 25.51624154579897 30.155959374070406 12.626138804169813 3 28.781385557331664 23.83733283646004 34.1873343074665 13.193947298741799 4 26.946223272629798 27.52073301886484 30.500992112136455 15.032051596368904 5 20.88845521439102 36.70389947468725 29.225629509043422 13.182015801878311 6 21.378790701931592 40.13837267458395 28.640659272407515 9.84217735107694 7 37.31256925988761 57.30207608045424 4.558322137339702 0.8270325223184369 8 87.47274551915088 3.405379960969295 7.603632405291701 1.5182421145881344 9 83.08980004118818 5.141167586862932 8.999944428644746 2.769087943304142 10 55.32618751082824 21.50595103836712 13.829095200269359 9.338766250535283 11 50.84255981275723 18.45018028001425 18.990693432446477 11.716566474782047 12 44.08148722022274 21.17415735846466 22.207948011362706 12.536407409949888 13 21.26911899788502 41.75795078993047 23.620277660642078 13.352652551542432 14 14.433025075756834 43.74266539833221 28.110116274888615 13.71419325102235 15 13.672841624906429 22.202227430674736 50.91153367133793 13.21339727308091 16 15.5576912390124 17.016766204770637 49.62522024235649 17.800322313860477 17 16.370013696704618 18.063632470669766 29.35082850352878 36.215525329096835 18 21.323546237002024 23.21411643179597 34.6730933304567 20.78924400074531 19 31.130255987813527 22.839173228989942 26.36664672635684 19.66392405683969 20 33.490240689346315 22.36289402542553 24.823397501904136 19.323467783324016 21 22.839827009639997 27.445875134433646 27.86331407949319 21.850983776433168 22 22.722473382955286 25.007273309731854 25.90540447774367 26.364848829569194 23 20.604387521942513 29.874179913897088 25.895924658317888 23.62550790584251 24 20.52593384393602 22.7649691252088 38.840781529389076 17.868315501466103 25 17.87370919182905 24.386018247017944 37.04451919336543 20.695753367787574 26 16.602105827473824 35.05751635268851 28.212596391784594 20.127781428053073 27 18.830844063508252 33.29721195241785 29.80847495856665 18.063469025507253 28 15.040060409332066 28.854445544975206 39.753295871702086 16.352198173990644 29 16.507144188053466 24.51759160284133 38.74794467708139 20.22731953202381 30 18.700578268984973 29.257828206058583 31.491306351805903 20.550287173150537 31 29.82089679091768 25.927469574683 25.566746101015646 18.684887533383673 32 31.37803885418403 25.876474683978778 27.162134332310167 15.583352129527023 33 28.63542902720708 27.345029469162803 24.726474520533614 19.2930669830965 34 20.622203044656487 27.24205901677928 29.09797883712036 23.037759101443875 35 21.05435205434225 25.549420913789216 30.84798619215267 22.548240839715866 36 30.804836669249102 25.44677735173072 25.44955591949345 18.29883005952673 37 21.572963554997663 32.43765384275922 28.19298297228297 17.796399629960153 38 21.62379500053937 32.882551575121035 23.369389336183815 22.124264088155783 39 22.316639044434204 30.80385599827402 26.16626295711526 20.71324200017652 40 24.137091264509845 25.621009894970136 25.625913249845546 24.615985590674473 41 17.187729844759787 25.134433646167377 27.104438189942893 30.573398319129947 42 22.353904541487285 26.20156711221818 24.462674028236787 26.981854318057746 43 23.175870263767802 26.419602959011222 25.616760320744785 24.787766456476188 44 20.974100479548106 30.217087864850463 27.492293560587488 21.316518095013944 45 17.602717112381626 37.09306240663195 22.170192178822084 23.134028302164342 46 21.656974368529614 33.1685806095197 25.667264875961465 19.50718014598922 47 22.8628727775544 26.845867942846496 27.464507882960188 22.826751396638915 48 23.779963584417793 23.637766293031028 30.095811554265428 22.486458568285755 49 21.17072501005188 23.999143547348428 32.121550898458054 22.708580544141636 50 19.474164223161488 32.994511511442795 25.595349004455514 21.935975260940204 51 19.18960619522544 34.023071919140406 23.458793840078716 23.328528045555437 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 283.0 1 545.5 2 808.0 3 3313.0 4 5818.0 5 4497.0 6 3176.0 7 3282.0 8 3388.0 9 3484.0 10 3580.0 11 3593.5 12 3607.0 13 3476.5 14 3346.0 15 3294.0 16 3242.0 17 3077.0 18 2912.0 19 2794.5 20 2677.0 21 2814.0 22 2951.0 23 3017.0 24 3083.0 25 3408.5 26 4879.0 27 6024.0 28 7437.5 29 8851.0 30 9643.0 31 10435.0 32 11545.0 33 12655.0 34 13661.5 35 14668.0 36 16392.5 37 18117.0 38 25318.5 39 32520.0 40 42567.0 41 52614.0 42 57577.0 43 62540.0 44 59440.5 45 56341.0 46 53775.5 47 51210.0 48 48215.0 49 45220.0 50 41831.5 51 38443.0 52 34964.5 53 31486.0 54 29474.5 55 27463.0 56 26078.0 57 24693.0 58 23391.5 59 22090.0 60 20152.0 61 18214.0 62 15471.5 63 12729.0 64 10516.5 65 8304.0 66 6854.0 67 5404.0 68 4542.0 69 3680.0 70 3032.0 71 2384.0 72 1835.0 73 1286.0 74 1070.0 75 639.0 76 424.0 77 315.5 78 207.0 79 202.5 80 198.0 81 146.5 82 95.0 83 69.5 84 44.0 85 31.0 86 18.0 87 13.5 88 9.0 89 5.0 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 611826.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.428588277294484 #Duplication Level Percentage of deduplicated Percentage of total 1 74.0786930643342 18.83716586053025 2 5.8116759152059245 2.955654280976801 3 2.632432881531802 2.0081715573625236 4 1.9196371284250362 1.9525464872211247 5 1.438797071782185 1.8293289176463046 6 1.1494462020933645 1.7537276531959196 7 0.9640376868165231 1.7159882195296912 8 0.8334906186053986 1.6955591818803333 9 0.7454936219170425 1.706116533756976 >10 9.905935270336592 55.77045434693948 >50 0.48584030663817135 7.585986806471248 >100 0.03196317806830075 1.3064601530762512 >500 6.392635613660149E-4 0.08257829510547912 >1k 0.0019177906840980447 0.8002617063076253 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 1976 0.3229676411267256 No Hit CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1651 0.2698479633098299 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1296 0.21182493061752852 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.01062393556337913 0.0 2 0.0 0.0 0.0 0.03971717449078659 0.0 3 0.0 0.0 0.0 0.05066800037919278 0.0 4 0.0 0.0 0.0 0.07453099410616744 0.0 5 0.0 0.0 0.0 0.12617966546044138 0.0 6 0.0 0.0 0.0 0.18077034973995876 0.0 7 0.0 0.0 0.0 0.21133459512998795 0.0 8 0.0 0.0 0.0 0.45715611955032964 0.0 9 0.0 0.0 0.0 0.547868184745336 0.0 10 0.0 0.0 0.0 0.7212835021721862 0.0 11 0.0 0.0 0.0 0.9000925099619826 0.0 12 0.0 0.0 0.0 1.0682775821884 0.0 13 0.0 0.0 0.0 1.1331653117062694 0.0 14 0.0 0.0 0.0 1.1568648602707305 0.0 15 0.0 0.0 0.0 1.1993606025242471 0.0 16 0.0 0.0 0.0 1.2854962031688748 0.0 17 0.0 0.0 0.0 1.3950044620529367 0.0 18 0.0 0.0 0.0 1.566948773017165 0.0 19 0.0 0.0 0.0 1.6455658961861706 0.0 20 0.0 0.0 0.0 1.722548567730041 0.0 21 0.0 0.0 0.0 1.8276438072262375 0.0 22 0.0 0.0 0.0 1.9391134080604617 0.0 23 0.0 0.0 0.0 2.055976699257632 0.0 24 0.0 0.0 0.0 2.147179099940179 0.0 25 0.0 0.0 0.0 2.226613448921752 0.0 26 0.0 0.0 0.0 2.2995099914027843 0.0 27 0.0 0.0 0.0 2.369137630633546 0.0 28 0.0 0.0 0.0 2.444649295714795 0.0 29 0.0 0.0 0.0 2.5296407802218277 0.0 30 0.0 0.0 0.0 2.6319574519552944 0.0 31 0.0 0.0 0.0 2.74767662701487 0.0 32 0.0 0.0 0.0 2.8432920470852823 0.0 33 0.0 0.0 0.0 2.9382536865056403 0.0 34 0.0 0.0 0.0 3.046781274414621 0.0 35 0.0 0.0 0.0 3.1664231333745216 0.0 36 0.0 0.0 0.0 3.279527185833881 0.0 37 0.0 0.0 0.0 3.388545109230402 0.0 38 0.0 0.0 0.0 3.4947844648641935 0.0 39 0.0 0.0 0.0 3.6010238204979848 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGGTACA 20 7.030696E-4 45.000004 7 GATCGCC 20 7.030696E-4 45.000004 27 GATCGAT 20 7.030696E-4 45.000004 45 CGAAACG 20 7.030696E-4 45.000004 45 ACCGCAA 20 7.030696E-4 45.000004 32 TAGCGGA 20 7.030696E-4 45.000004 1 TAGCGCG 20 7.030696E-4 45.000004 1 CACGCTA 20 7.030696E-4 45.000004 42 ATATGCG 20 7.030696E-4 45.000004 1 CGAATAT 20 7.030696E-4 45.000004 14 CGTACCA 20 7.030696E-4 45.000004 20 CGTACAG 35 1.210683E-7 45.000004 2 CACAACG 20 7.030696E-4 45.000004 12 TTTCTAC 20 7.030696E-4 45.000004 41 GTGGTAC 20 7.030696E-4 45.000004 32 AATCGGC 20 7.030696E-4 45.000004 10 TACGTAA 20 7.030696E-4 45.000004 1 ATCGAAA 20 7.030696E-4 45.000004 43 AATCGAA 20 7.030696E-4 45.000004 42 AACGTCC 25 3.888659E-5 45.0 21 >>END_MODULE