SRR1546412_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546412_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	513960
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

$Duplication level graph$

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1207	0.2348431784574675	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1140	0.22180714452486577	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1024	0.19923729473110746	No Hit
AAGGAAAGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	729	0.14183983189353255	No Hit
AAGGAAAGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	620	0.12063195579422523	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	606	0.11790800840532337	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGCGAA	35	1.2101737E-7	45.000004	1
ATCGTAG	35	1.2101737E-7	45.000004	2
TCTACGG	35	1.2101737E-7	45.000004	2
CTGTCCG	25	3.8877857E-5	45.0	21
ATAGGCG	50	2.1827873E-11	45.0	5
ACGTTAG	20	7.0296426E-4	45.0	2
CGTTGAC	20	7.0296426E-4	45.0	34
TACCTTA	20	7.0296426E-4	45.0	11
TATTACG	20	7.0296426E-4	45.0	1
AGCGAAA	45	3.8380676E-10	45.0	1
GCGATAT	55	1.8189894E-12	45.0	9
TCCGTAG	20	7.0296426E-4	45.0	2
ACCCGTT	20	7.0296426E-4	45.0	12
GATCTCG	20	7.0296426E-4	45.0	13
TATACTC	25	3.8877857E-5	45.0	43
TATCGCG	40	6.8030204E-9	45.0	32
CGATAGT	45	3.8380676E-10	45.0	10
TACAACG	25	3.8877857E-5	45.0	8
CGTACTT	30	2.1631513E-6	44.999996	29
ACGTACT	30	2.1631513E-6	44.999996	28